RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 C5P01031 1676 aa20.34■□□□□ 0.85
SMG6-220ENST00000576218 CASZ1Q86V15 1759 aa20.34■□□□□ 0.85
SMG6-220ENST00000576218 RNMTO43148 476 aaKnown RBP20.32■□□□□ 0.84
SMG6-220ENST00000576218 MTFR1LQ9H019 292 aa20.32■□□□□ 0.84
SMG6-220ENST00000576218 RSPH6AQ9H0K4 717 aa20.32■□□□□ 0.84
SMG6-220ENST00000576218 MAP3K5Q99683 1374 aa20.32■□□□□ 0.84
SMG6-220ENST00000576218 GNAT3A8MTJ3 354 aa20.31■□□□□ 0.84
SMG6-220ENST00000576218 PNPLA7Q6ZV29 1317 aa20.3■□□□□ 0.84
SMG6-220ENST00000576218 PTCD1O75127 700 aaKnown RBP20.3■□□□□ 0.84
SMG6-220ENST00000576218 FCHSD2O94868 740 aa20.3■□□□□ 0.84
SMG6-220ENST00000576218 SLC52A2Q9HAB3 445 aa20.3■□□□□ 0.84
SMG6-220ENST00000576218 LGR6Q9HBX8 967 aa20.3■□□□□ 0.84
SMG6-220ENST00000576218 MYBBP1AQ9BQG0 1328 aaKnown RBP20.29■□□□□ 0.84
SMG6-220ENST00000576218 SCN11AQ9UI33 1791 aa20.29■□□□□ 0.84
SMG6-220ENST00000576218 PHF14O94880 888 aa20.29■□□□□ 0.84
SMG6-220ENST00000576218 TEFQ10587 303 aa20.29■□□□□ 0.84
SMG6-220ENST00000576218 FLAD1Q8NFF5 587 aa20.28■□□□□ 0.84
SMG6-220ENST00000576218 RTF1Q92541 710 aaKnown RBP20.28■□□□□ 0.84
SMG6-220ENST00000576218 C4BP0C0L5 1744 aa20.27■□□□□ 0.84
SMG6-220ENST00000576218 ZNF316A6NFI3 1004 aaPredicted RBP20.27■□□□□ 0.84
SMG6-220ENST00000576218 POLD1P28340 1107 aa20.27■□□□□ 0.84
SMG6-220ENST00000576218 LINC00116Q8NCU8 138 aa20.27■□□□□ 0.84
SMG6-220ENST00000576218 SLC16A10Q8TF71 515 aa20.27■□□□□ 0.84
SMG6-220ENST00000576218 PHACTR3Q96KR7 559 aa20.27■□□□□ 0.84
SMG6-220ENST00000576218 PNNQ9H307 717 aaKnown RBP20.27■□□□□ 0.84
SMG6-220ENST00000576218 QSER1Q2KHR3 1735 aa20.27■□□□□ 0.83
SMG6-220ENST00000576218 MAPK8IP3Q9UPT6 1336 aa20.27■□□□□ 0.83
SMG6-220ENST00000576218 TAF1LQ8IZX4 1826 aa20.26■□□□□ 0.83
SMG6-220ENST00000576218 GNPATO15228 680 aa20.26■□□□□ 0.83
SMG6-220ENST00000576218 ITPK1Q13572 414 aa20.26■□□□□ 0.83
SMG6-220ENST00000576218 TTC5Q8N0Z6 440 aa20.26■□□□□ 0.83
SMG6-220ENST00000576218 TUBGCP6Q96RT7 1819 aa20.25■□□□□ 0.83
SMG6-220ENST00000576218 COL23A1Q86Y22 540 aaPredicted RBP20.24■□□□□ 0.83
SMG6-220ENST00000576218 MRC1P22897 1456 aa20.24■□□□□ 0.83
SMG6-220ENST00000576218 SLC39A6Q13433 755 aa20.23■□□□□ 0.83
SMG6-220ENST00000576218 WDR43Q15061 677 aaKnown RBP eCLIP20.23■□□□□ 0.83
SMG6-220ENST00000576218 KLHL34Q8N239 644 aa20.23■□□□□ 0.83
SMG6-220ENST00000576218 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.22■□□□□ 0.83
SMG6-220ENST00000576218 VIRMAQ69YN4 1812 aaKnown RBP20.22■□□□□ 0.83
SMG6-220ENST00000576218 SSFA2P28290 1259 aa20.21■□□□□ 0.83
SMG6-220ENST00000576218 PTGER2P43116 358 aa20.21■□□□□ 0.83
SMG6-220ENST00000576218 MSL1Q68DK7 614 aa20.21■□□□□ 0.83
SMG6-220ENST00000576218 ARXQ96QS3 562 aa20.21■□□□□ 0.83
SMG6-220ENST00000576218 PRKRIP1Q9H875 184 aaPredicted RBP20.21■□□□□ 0.83
SMG6-220ENST00000576218 RTCBQ9Y3I0 505 aaKnown RBP20.21■□□□□ 0.83
SMG6-220ENST00000576218 DCAF8L1A6NGE4 600 aa20.2■□□□□ 0.82
SMG6-220ENST00000576218 IL17REQ8NFR9 667 aa20.19■□□□□ 0.82
SMG6-220ENST00000576218 SLC4A9Q96Q91 983 aa20.19■□□□□ 0.82
SMG6-220ENST00000576218 ADAMTS7Q9UKP4 1686 aa20.19■□□□□ 0.82
SMG6-220ENST00000576218 MCM10Q7L590 875 aa20.18■□□□□ 0.82
SMG6-220ENST00000576218 CNTNAP4Q9C0A0 1308 aa20.18■□□□□ 0.82
SMG6-220ENST00000576218 ZNF831Q5JPB2 1677 aa20.17■□□□□ 0.82
SMG6-220ENST00000576218 BTBD11A6QL63 1104 aa20.17■□□□□ 0.82
SMG6-220ENST00000576218 TRAPPC3LQ5T215 181 aa20.17■□□□□ 0.82
SMG6-220ENST00000576218 SMIM5Q71RC9 77 aa20.17■□□□□ 0.82
SMG6-220ENST00000576218 UBR3Q6ZT12 1888 aa20.16■□□□□ 0.82
SMG6-220ENST00000576218 CRKLP46109 303 aaKnown RBP20.16■□□□□ 0.82
SMG6-220ENST00000576218 RC3H1Q5TC82 1133 aaKnown RBP20.16■□□□□ 0.82
SMG6-220ENST00000576218 DNAJC10Q8IXB1 793 aa20.16■□□□□ 0.82
SMG6-220ENST00000576218 FHDC1Q9C0D6 1143 aaPredicted RBP20.16■□□□□ 0.82
SMG6-220ENST00000576218 HTATSF1O43719 755 aaKnown RBP20.15■□□□□ 0.82
SMG6-220ENST00000576218 DCTN1Q14203 1278 aa20.15■□□□□ 0.82
SMG6-220ENST00000576218 AMIGO3Q86WK7 504 aa20.15■□□□□ 0.82
SMG6-220ENST00000576218 CEMIPQ8WUJ3 1361 aa20.15■□□□□ 0.82
SMG6-220ENST00000576218 COL5A3P25940 1745 aaPredicted RBP20.14■□□□□ 0.81
SMG6-220ENST00000576218 RFC4P35249 363 aa20.14■□□□□ 0.81
SMG6-220ENST00000576218 NFE2L2Q16236 605 aa20.14■□□□□ 0.81
SMG6-220ENST00000576218 ZNF790Q6PG37 636 aa20.14■□□□□ 0.81
SMG6-220ENST00000576218 SGIP1Q9BQI5 828 aa20.14■□□□□ 0.81
SMG6-220ENST00000576218 KCPQ6ZWJ8 1503 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 ANP32CO43423 234 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 RPS6KA4O75676 772 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 ADRA2BP18089 450 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 FMNL2Q96PY5 1086 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 PLEKHF1Q96S99 279 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 CCDC87Q9NVE4 849 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 TJP1Q07157 1748 aa20.13■□□□□ 0.81
SMG6-220ENST00000576218 CCDC146Q8IYE0 955 aa20.12■□□□□ 0.81
SMG6-220ENST00000576218 VSIG10Q8N0Z9 540 aa20.12■□□□□ 0.81
SMG6-220ENST00000576218 STARD3NLO95772 234 aa20.11■□□□□ 0.81
SMG6-220ENST00000576218 NPM2Q86SE8 214 aaKnown RBP20.11■□□□□ 0.81
SMG6-220ENST00000576218 ZNF496Q96IT1 587 aaPredicted RBP20.11■□□□□ 0.81
SMG6-220ENST00000576218 SYT17Q9BSW7 474 aa20.1■□□□□ 0.81
SMG6-220ENST00000576218 TEX13AQ9BXU3 409 aaPredicted RBP20.1■□□□□ 0.81
SMG6-220ENST00000576218 HEG1Q9ULI3 1381 aa20.09■□□□□ 0.81
SMG6-220ENST00000576218 SIPA1L3O60292 1781 aaPredicted RBP20.09■□□□□ 0.81
SMG6-220ENST00000576218 RIPK4P57078 832 aa20.09■□□□□ 0.81
SMG6-220ENST00000576218 LMOD3Q0VAK6 560 aa20.09■□□□□ 0.81
SMG6-220ENST00000576218 ARHGEF1Q92888 912 aaKnown RBP20.09■□□□□ 0.81
SMG6-220ENST00000576218 CICQ96RK0 1608 aaPredicted RBP20.09■□□□□ 0.81
SMG6-220ENST00000576218 UBR2Q8IWV8 1755 aa20.08■□□□□ 0.81
SMG6-220ENST00000576218 CYP19A1P11511 503 aaPredicted RBP20.08■□□□□ 0.81
SMG6-220ENST00000576218 TAF7Q15545 349 aaPredicted RBP20.08■□□□□ 0.81
SMG6-220ENST00000576218 NEUROD2Q15784 382 aa20.08■□□□□ 0.81
SMG6-220ENST00000576218 ZNF330Q9Y3S2 320 aaPredicted RBP20.08■□□□□ 0.81
SMG6-220ENST00000576218 ZPR1O75312 459 aa20.07■□□□□ 0.8
SMG6-220ENST00000576218 CANXP27824 592 aaKnown RBP20.07■□□□□ 0.8
SMG6-220ENST00000576218 INTS5Q6P9B9 1019 aaKnown RBP20.07■□□□□ 0.8
SMG6-220ENST00000576218 PNISRQ8TF01 805 aaKnown RBP20.07■□□□□ 0.8
SMG6-220ENST00000576218 RUNDC1Q96C34 613 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms