RNA–Protein interactions for RNA: ENST00000566095.6

SF3B3-207, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 453 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-207ENST00000566095 QTRT2Q9H974 415 aaKnown RBP12.64□□□□□ -0.39
SF3B3-207ENST00000566095 SLC52A2Q9HAB3 445 aa12.64□□□□□ -0.39
SF3B3-207ENST00000566095 ADAMTS7Q9UKP4 1686 aa12.64□□□□□ -0.39
SF3B3-207ENST00000566095 HOXB7P09629 217 aa12.63□□□□□ -0.39
SF3B3-207ENST00000566095 THUMPD2Q9BTF0 503 aaKnown RBP12.63□□□□□ -0.39
SF3B3-207ENST00000566095 MBIPQ9NS73 344 aa12.63□□□□□ -0.39
SF3B3-207ENST00000566095 MRC1P22897 1456 aa12.63□□□□□ -0.39
SF3B3-207ENST00000566095 SCN11AQ9UI33 1791 aa12.63□□□□□ -0.39
SF3B3-207ENST00000566095 MS4A1P11836 297 aa12.62□□□□□ -0.39
SF3B3-207ENST00000566095 HMGB2P26583 209 aaKnown RBP12.62□□□□□ -0.39
SF3B3-207ENST00000566095 BRPF1P55201 1214 aaPredicted RBP12.62□□□□□ -0.39
SF3B3-207ENST00000566095 RBM6P78332 1123 aaKnown RBP12.62□□□□□ -0.39
SF3B3-207ENST00000566095 TSR2Q969E8 191 aaKnown RBP12.62□□□□□ -0.39
SF3B3-207ENST00000566095 TMOD3Q9NYL9 352 aa12.62□□□□□ -0.39
SF3B3-207ENST00000566095 RRP1P56182 461 aaKnown RBP12.61□□□□□ -0.39
SF3B3-207ENST00000566095 EXOSC9Q06265 439 aaKnown RBP12.61□□□□□ -0.39
SF3B3-207ENST00000566095 ALDH1L2Q3SY69 923 aa12.61□□□□□ -0.39
SF3B3-207ENST00000566095 LGR6Q9HBX8 967 aa12.61□□□□□ -0.39
SF3B3-207ENST00000566095 KDM6AO15550 1401 aaPredicted RBP12.61□□□□□ -0.39
SF3B3-207ENST00000566095 ONECUT3O60422 494 aaPredicted RBP12.6□□□□□ -0.39
SF3B3-207ENST00000566095 CANXP27824 592 aaKnown RBP12.6□□□□□ -0.39
SF3B3-207ENST00000566095 FKBP8Q14318 412 aa12.6□□□□□ -0.39
SF3B3-207ENST00000566095 TWISTNBQ3B726 338 aaPredicted RBP12.6□□□□□ -0.39
SF3B3-207ENST00000566095 SPINK5Q9NQ38 1064 aaPredicted RBP12.6□□□□□ -0.39
SF3B3-207ENST00000566095 PPP4R2Q9NY27 417 aa12.6□□□□□ -0.39
SF3B3-207ENST00000566095 KIF16BQ96L93 1317 aa12.6□□□□□ -0.39
SF3B3-207ENST00000566095 THSD7AQ9UPZ6 1657 aa12.59□□□□□ -0.39
SF3B3-207ENST00000566095 IPO8O15397 1037 aaKnown RBP12.59□□□□□ -0.39
SF3B3-207ENST00000566095 PDE3AQ14432 1141 aa12.59□□□□□ -0.39
SF3B3-207ENST00000566095 STK31Q9BXU1 1019 aa12.59□□□□□ -0.39
SF3B3-207ENST00000566095 VIRMAQ69YN4 1812 aaKnown RBP12.58□□□□□ -0.4
SF3B3-207ENST00000566095 BCL9O00512 1426 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 GLI3P10071 1580 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 RXRBP28702 533 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 CCDC30Q5VVM6 783 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 ZNF790Q6PG37 636 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 NFATC2IPQ8NCF5 419 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 FMNL2Q96PY5 1086 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 SHANK3Q9BYB0 1731 aa12.58□□□□□ -0.4
SF3B3-207ENST00000566095 SEPT12Q8IYM1 358 aa12.57□□□□□ -0.4
SF3B3-207ENST00000566095 SMARCC1Q92922 1105 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-207ENST00000566095 TEX13AQ9BXU3 409 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-207ENST00000566095 SMC4Q9NTJ3 1288 aa12.57□□□□□ -0.4
SF3B3-207ENST00000566095 KDM3BQ7LBC6 1761 aa12.56□□□□□ -0.4
SF3B3-207ENST00000566095 RARSP54136 660 aaKnown RBP12.56□□□□□ -0.4
SF3B3-207ENST00000566095 EIF4A1P60842 406 aaKnown RBP12.56□□□□□ -0.4
SF3B3-207ENST00000566095 SIPA1L3O60292 1781 aaPredicted RBP12.56□□□□□ -0.4
SF3B3-207ENST00000566095 VAMP4O75379 141 aa12.55□□□□□ -0.4
SF3B3-207ENST00000566095 SNRPA1P09661 255 aaKnown RBP12.55□□□□□ -0.4
SF3B3-207ENST00000566095 MARCH10Q8NA82 808 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-207ENST00000566095 SYTL4Q96C24 671 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-207ENST00000566095 HDGFL1Q5TGJ6 251 aa12.54□□□□□ -0.4
SF3B3-207ENST00000566095 FAM196AQ6ZSG2 479 aa12.54□□□□□ -0.4
SF3B3-207ENST00000566095 KRT27Q7Z3Y8 459 aa12.54□□□□□ -0.4
SF3B3-207ENST00000566095 VSIG10Q8N0Z9 540 aa12.54□□□□□ -0.4
SF3B3-207ENST00000566095 CHMP4BQ9H444 224 aaKnown RBP12.54□□□□□ -0.4
SF3B3-207ENST00000566095 MIS18AQ9NYP9 233 aa12.54□□□□□ -0.4
SF3B3-207ENST00000566095 ZKSCAN2Q63HK3 967 aa12.53□□□□□ -0.4
SF3B3-207ENST00000566095 C8orf58Q8NAV2 365 aa12.53□□□□□ -0.4
SF3B3-207ENST00000566095 ARHGAP45Q92619 1136 aa12.53□□□□□ -0.4
SF3B3-207ENST00000566095 ERBB4Q15303 1308 aa12.53□□□□□ -0.4
SF3B3-207ENST00000566095 DOT1LQ8TEK3 1739 aa12.52□□□□□ -0.41
SF3B3-207ENST00000566095 ELL2O00472 640 aaPredicted RBP12.52□□□□□ -0.41
SF3B3-207ENST00000566095 PRIM1P49642 420 aaKnown RBP12.52□□□□□ -0.41
SF3B3-207ENST00000566095 FTSJ3Q8IY81 847 aaKnown RBP12.52□□□□□ -0.41
SF3B3-207ENST00000566095 API5Q9BZZ5 524 aaKnown RBP12.52□□□□□ -0.41
SF3B3-207ENST00000566095 DBF4Q9UBU7 674 aaPredicted RBP12.52□□□□□ -0.41
SF3B3-207ENST00000566095 PTPRCP08575 1304 aa12.52□□□□□ -0.41
SF3B3-207ENST00000566095 HEG1Q9ULI3 1381 aa12.52□□□□□ -0.41
SF3B3-207ENST00000566095 GIGYF1O75420 1035 aaPredicted RBP12.51□□□□□ -0.41
SF3B3-207ENST00000566095 STARD3NLO95772 234 aa12.51□□□□□ -0.41
SF3B3-207ENST00000566095 NPM2Q86SE8 214 aaKnown RBP12.51□□□□□ -0.41
SF3B3-207ENST00000566095 PIGBQ92521 554 aa12.51□□□□□ -0.41
SF3B3-207ENST00000566095 CACNA1FO60840 1977 aa12.5□□□□□ -0.41
SF3B3-207ENST00000566095 TSPYL6Q8N831 410 aa12.5□□□□□ -0.41
SF3B3-207ENST00000566095 SSH1Q8WYL5 1049 aa12.5□□□□□ -0.41
SF3B3-207ENST00000566095 FRAT1Q92837 279 aaPredicted RBP12.5□□□□□ -0.41
SF3B3-207ENST00000566095 HYPKQ9NX55 129 aa12.5□□□□□ -0.41
SF3B3-207ENST00000566095 PAPPAQ13219 1627 aa12.5□□□□□ -0.41
SF3B3-207ENST00000566095 TOGARAM1Q9Y4F4 1720 aa12.5□□□□□ -0.41
SF3B3-207ENST00000566095 KAT6BQ8WYB5 2073 aa12.5□□□□□ -0.41
SF3B3-207ENST00000566095 ITGB4P16144 1822 aa12.49□□□□□ -0.41
SF3B3-207ENST00000566095 DDX58O95786 925 aaKnown RBP12.49□□□□□ -0.41
SF3B3-207ENST00000566095 SLC39A6Q13433 755 aa12.49□□□□□ -0.41
SF3B3-207ENST00000566095 ZNF496Q96IT1 587 aaPredicted RBP12.49□□□□□ -0.41
SF3B3-207ENST00000566095 NHSQ6T4R5 1651 aa12.48□□□□□ -0.41
SF3B3-207ENST00000566095 BCAR3O75815 825 aa12.48□□□□□ -0.41
SF3B3-207ENST00000566095 SLC4A2P04920 1241 aa12.48□□□□□ -0.41
SF3B3-207ENST00000566095 EIF2S2P20042 333 aaKnown RBP12.48□□□□□ -0.41
SF3B3-207ENST00000566095 ATF7IPQ6VMQ6 1270 aa12.48□□□□□ -0.41
SF3B3-207ENST00000566095 MRPL50Q8N5N7 158 aaKnown RBP12.48□□□□□ -0.41
SF3B3-207ENST00000566095 ACSBG1Q96GR2 724 aa12.48□□□□□ -0.41
SF3B3-207ENST00000566095 RBM42Q9BTD8 480 aaKnown RBP12.48□□□□□ -0.41
SF3B3-207ENST00000566095 BCL11BQ9C0K0 894 aaPredicted RBP12.48□□□□□ -0.41
SF3B3-207ENST00000566095 UBR2Q8IWV8 1755 aa12.48□□□□□ -0.41
SF3B3-207ENST00000566095 PALLDQ8WX93 1383 aa12.47□□□□□ -0.41
SF3B3-207ENST00000566095 KCNQ3O43525 872 aa12.47□□□□□ -0.41
SF3B3-207ENST00000566095 PTCD1O75127 700 aaKnown RBP12.47□□□□□ -0.41
SF3B3-207ENST00000566095 BCL2L13Q9BXK5 485 aa12.47□□□□□ -0.41
SF3B3-207ENST00000566095 DDX21Q9NR30 783 aaKnown RBP eCLIP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms