RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 LGR6Q9HBX8 967 aa16.58■□□□□ 0.24
CLK3-214ENST00000564096 BTBD11A6QL63 1104 aa16.57■□□□□ 0.24
CLK3-214ENST00000564096 CABP4P57796 275 aa16.57■□□□□ 0.24
CLK3-214ENST00000564096 RBM6P78332 1123 aaKnown RBP16.56■□□□□ 0.24
CLK3-214ENST00000564096 SOS1Q07889 1333 aaPredicted RBP16.55■□□□□ 0.24
CLK3-214ENST00000564096 ZNF428Q96B54 188 aa16.55■□□□□ 0.24
CLK3-214ENST00000564096 RCAN3Q9UKA8 241 aa16.55■□□□□ 0.24
CLK3-214ENST00000564096 SIPA1L3O60292 1781 aaPredicted RBP16.55■□□□□ 0.24
CLK3-214ENST00000564096 VIRMAQ69YN4 1812 aaKnown RBP16.54■□□□□ 0.24
CLK3-214ENST00000564096 KDM3BQ7LBC6 1761 aa16.54■□□□□ 0.24
CLK3-214ENST00000564096 TOGARAM1Q9Y4F4 1720 aa16.54■□□□□ 0.24
CLK3-214ENST00000564096 EXOSC9Q06265 439 aaKnown RBP16.54■□□□□ 0.24
CLK3-214ENST00000564096 TTC5Q8N0Z6 440 aa16.54■□□□□ 0.24
CLK3-214ENST00000564096 TMOD3Q9NYL9 352 aa16.54■□□□□ 0.24
CLK3-214ENST00000564096 ONECUT3O60422 494 aaPredicted RBP16.53■□□□□ 0.24
CLK3-214ENST00000564096 SEPT12Q8IYM1 358 aa16.53■□□□□ 0.24
CLK3-214ENST00000564096 CHMP4AQ9BY43 222 aa16.53■□□□□ 0.24
CLK3-214ENST00000564096 DOT1LQ8TEK3 1739 aa16.53■□□□□ 0.24
CLK3-214ENST00000564096 MARCH10Q8NA82 808 aaPredicted RBP16.52■□□□□ 0.24
CLK3-214ENST00000564096 BCL9O00512 1426 aa16.52■□□□□ 0.23
CLK3-214ENST00000564096 HOXB7P09629 217 aa16.51■□□□□ 0.23
CLK3-214ENST00000564096 TWISTNBQ3B726 338 aaPredicted RBP16.51■□□□□ 0.23
CLK3-214ENST00000564096 NFATC2IPQ8NCF5 419 aa16.51■□□□□ 0.23
CLK3-214ENST00000564096 MIS18AQ9NYP9 233 aa16.51■□□□□ 0.23
CLK3-214ENST00000564096 PAPPAQ13219 1627 aa16.51■□□□□ 0.23
CLK3-214ENST00000564096 RXRBP28702 533 aa16.5■□□□□ 0.23
CLK3-214ENST00000564096 ZNF790Q6PG37 636 aa16.49■□□□□ 0.23
CLK3-214ENST00000564096 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.49■□□□□ 0.23
CLK3-214ENST00000564096 SYTL4Q96C24 671 aaPredicted RBP16.49■□□□□ 0.23
CLK3-214ENST00000564096 NEFLP07196 543 aa16.48■□□□□ 0.23
CLK3-214ENST00000564096 ALDH1L2Q3SY69 923 aa16.48■□□□□ 0.23
CLK3-214ENST00000564096 EIF4A1P60842 406 aaKnown RBP16.47■□□□□ 0.23
CLK3-214ENST00000564096 C8orf58Q8NAV2 365 aa16.47■□□□□ 0.23
CLK3-214ENST00000564096 FMNL2Q96PY5 1086 aa16.47■□□□□ 0.23
CLK3-214ENST00000564096 SMC4Q9NTJ3 1288 aa16.47■□□□□ 0.23
CLK3-214ENST00000564096 KIF16BQ96L93 1317 aa16.46■□□□□ 0.23
CLK3-214ENST00000564096 RGS12O14924 1447 aa16.46■□□□□ 0.23
CLK3-214ENST00000564096 CANXP27824 592 aaKnown RBP16.46■□□□□ 0.23
CLK3-214ENST00000564096 RARSP54136 660 aaKnown RBP16.46■□□□□ 0.23
CLK3-214ENST00000564096 KRT27Q7Z3Y8 459 aa16.46■□□□□ 0.23
CLK3-214ENST00000564096 NHSQ6T4R5 1651 aa16.46■□□□□ 0.23
CLK3-214ENST00000564096 TSPYL6Q8N831 410 aa16.45■□□□□ 0.22
CLK3-214ENST00000564096 KCPQ6ZWJ8 1503 aa16.45■□□□□ 0.22
CLK3-214ENST00000564096 UBR2Q8IWV8 1755 aa16.44■□□□□ 0.22
CLK3-214ENST00000564096 ELL2O00472 640 aaPredicted RBP16.44■□□□□ 0.22
CLK3-214ENST00000564096 VAMP4O75379 141 aa16.44■□□□□ 0.22
CLK3-214ENST00000564096 PRIM1P49642 420 aaKnown RBP16.44■□□□□ 0.22
CLK3-214ENST00000564096 RRP1P56182 461 aaKnown RBP16.44■□□□□ 0.22
CLK3-214ENST00000564096 SLC39A6Q13433 755 aa16.44■□□□□ 0.22
CLK3-214ENST00000564096 PIGBQ92521 554 aa16.44■□□□□ 0.22
CLK3-214ENST00000564096 ACSBG1Q96GR2 724 aa16.44■□□□□ 0.22
CLK3-214ENST00000564096 STK31Q9BXU1 1019 aa16.44■□□□□ 0.22
CLK3-214ENST00000564096 SUPT16HQ9Y5B9 1047 aaKnown RBP16.44■□□□□ 0.22
CLK3-214ENST00000564096 ITGB4P16144 1822 aa16.43■□□□□ 0.22
CLK3-214ENST00000564096 HEG1Q9ULI3 1381 aa16.43■□□□□ 0.22
CLK3-214ENST00000564096 KCNQ3O43525 872 aa16.43■□□□□ 0.22
CLK3-214ENST00000564096 KRT24Q2M2I5 525 aa16.43■□□□□ 0.22
CLK3-214ENST00000564096 HDGFL1Q5TGJ6 251 aa16.43■□□□□ 0.22
CLK3-214ENST00000564096 CCDC30Q5VVM6 783 aa16.43■□□□□ 0.22
CLK3-214ENST00000564096 FAM196AQ6ZSG2 479 aa16.43■□□□□ 0.22
CLK3-214ENST00000564096 SMARCC1Q92922 1105 aaPredicted RBP16.43■□□□□ 0.22
CLK3-214ENST00000564096 LAMB4A4D0S4 1761 aa16.42■□□□□ 0.22
CLK3-214ENST00000564096 SNRPA1P09661 255 aaKnown RBP16.42■□□□□ 0.22
CLK3-214ENST00000564096 ZNF496Q96IT1 587 aaPredicted RBP16.42■□□□□ 0.22
CLK3-214ENST00000564096 RGS17Q9UGC6 210 aaPredicted RBP16.42■□□□□ 0.22
CLK3-214ENST00000564096 RNF123Q5XPI4 1314 aa16.42■□□□□ 0.22
CLK3-214ENST00000564096 GIGYF1O75420 1035 aaPredicted RBP16.41■□□□□ 0.22
CLK3-214ENST00000564096 VSIG10Q8N0Z9 540 aa16.41■□□□□ 0.22
CLK3-214ENST00000564096 SSH1Q8WYL5 1049 aa16.41■□□□□ 0.22
CLK3-214ENST00000564096 BCL2L13Q9BXK5 485 aa16.41■□□□□ 0.22
CLK3-214ENST00000564096 PALLDQ8WX93 1383 aa16.4■□□□□ 0.22
CLK3-214ENST00000564096 IPO8O15397 1037 aaKnown RBP16.4■□□□□ 0.22
CLK3-214ENST00000564096 POTEAQ6S8J7 498 aa16.4■□□□□ 0.22
CLK3-214ENST00000564096 ATG3Q9NT62 314 aa16.4■□□□□ 0.22
CLK3-214ENST00000564096 BCAR3O75815 825 aa16.39■□□□□ 0.21
CLK3-214ENST00000564096 MS4A1P11836 297 aa16.39■□□□□ 0.21
CLK3-214ENST00000564096 BRPF1P55201 1214 aaPredicted RBP16.39■□□□□ 0.21
CLK3-214ENST00000564096 TEX13AQ9BXU3 409 aaPredicted RBP16.39■□□□□ 0.21
CLK3-214ENST00000564096 ASAP1Q9ULH1 1129 aa16.39■□□□□ 0.21
CLK3-214ENST00000564096 ERBB4Q15303 1308 aa16.39■□□□□ 0.21
CLK3-214ENST00000564096 C5P01031 1676 aa16.38■□□□□ 0.21
CLK3-214ENST00000564096 PTCD1O75127 700 aaKnown RBP16.38■□□□□ 0.21
CLK3-214ENST00000564096 ZKSCAN2Q63HK3 967 aa16.38■□□□□ 0.21
CLK3-214ENST00000564096 FRAT1Q92837 279 aaPredicted RBP16.38■□□□□ 0.21
CLK3-214ENST00000564096 BRWD3Q6RI45 1802 aa16.38■□□□□ 0.21
CLK3-214ENST00000564096 CICQ96RK0 1608 aaPredicted RBP16.37■□□□□ 0.21
CLK3-214ENST00000564096 EIF2S2P20042 333 aaKnown RBP16.37■□□□□ 0.21
CLK3-214ENST00000564096 MRPL50Q8N5N7 158 aaKnown RBP16.37■□□□□ 0.21
CLK3-214ENST00000564096 RBM42Q9BTD8 480 aaKnown RBP16.37■□□□□ 0.21
CLK3-214ENST00000564096 DBF4Q9UBU7 674 aaPredicted RBP16.37■□□□□ 0.21
CLK3-214ENST00000564096 PTPRCP08575 1304 aa16.37■□□□□ 0.21
CLK3-214ENST00000564096 FAM182BQ5T319 152 aa16.36■□□□□ 0.21
CLK3-214ENST00000564096 FTSJ3Q8IY81 847 aaKnown RBP16.36■□□□□ 0.21
CLK3-214ENST00000564096 BCL11BQ9C0K0 894 aaPredicted RBP16.36■□□□□ 0.21
CLK3-214ENST00000564096 KCNQ2O43526 872 aa16.35■□□□□ 0.21
CLK3-214ENST00000564096 ARHGAP45Q92619 1136 aa16.35■□□□□ 0.21
CLK3-214ENST00000564096 NECTIN2Q92692 538 aa16.35■□□□□ 0.21
CLK3-214ENST00000564096 API5Q9BZZ5 524 aaKnown RBP16.35■□□□□ 0.21
CLK3-214ENST00000564096 BTAF1O14981 1849 aa16.35■□□□□ 0.21
CLK3-214ENST00000564096 STARD3NLO95772 234 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms