RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 IRX6P78412 446 aaPredicted RBP13.22□□□□□ -0.29
USP3-219ENST00000561326 NKX1-1Q15270 411 aaPredicted RBP13.22□□□□□ -0.29
USP3-219ENST00000561326 VPS72Q15906 364 aa13.22□□□□□ -0.29
USP3-219ENST00000561326 BARGINQ6ZT62 677 aa13.22□□□□□ -0.29
USP3-219ENST00000561326 C8orf58Q8NAV2 365 aa13.22□□□□□ -0.29
USP3-219ENST00000561326 USP21Q9UK80 565 aa13.22□□□□□ -0.29
USP3-219ENST00000561326 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.22□□□□□ -0.29
USP3-219ENST00000561326 CABP4P57796 275 aa13.21□□□□□ -0.29
USP3-219ENST00000561326 TSPYL6Q8N831 410 aa13.21□□□□□ -0.29
USP3-219ENST00000561326 FRAT1Q92837 279 aaPredicted RBP13.21□□□□□ -0.29
USP3-219ENST00000561326 SLC52A2Q9HAB3 445 aa13.21□□□□□ -0.29
USP3-219ENST00000561326 KDM3BQ7LBC6 1761 aa13.2□□□□□ -0.3
USP3-219ENST00000561326 SHANK3Q9BYB0 1731 aa13.2□□□□□ -0.3
USP3-219ENST00000561326 PLIN1O60240 522 aa13.2□□□□□ -0.3
USP3-219ENST00000561326 PDE3AQ14432 1141 aa13.2□□□□□ -0.3
USP3-219ENST00000561326 NFATC2IPQ8NCF5 419 aa13.2□□□□□ -0.3
USP3-219ENST00000561326 SSH1Q8WYL5 1049 aa13.2□□□□□ -0.3
USP3-219ENST00000561326 KIF16BQ96L93 1317 aa13.19□□□□□ -0.3
USP3-219ENST00000561326 BRPF1P55201 1214 aaPredicted RBP13.19□□□□□ -0.3
USP3-219ENST00000561326 DDB1Q16531 1140 aa13.19□□□□□ -0.3
USP3-219ENST00000561326 ZKSCAN2Q63HK3 967 aa13.19□□□□□ -0.3
USP3-219ENST00000561326 DISP2A7MBM2 1401 aa13.19□□□□□ -0.3
USP3-219ENST00000561326 BCL9LQ86UU0 1499 aa13.18□□□□□ -0.3
USP3-219ENST00000561326 CCDC30Q5VVM6 783 aa13.18□□□□□ -0.3
USP3-219ENST00000561326 BCL2L13Q9BXK5 485 aa13.18□□□□□ -0.3
USP3-219ENST00000561326 STK31Q9BXU1 1019 aa13.18□□□□□ -0.3
USP3-219ENST00000561326 KDM6AO15550 1401 aaPredicted RBP13.18□□□□□ -0.3
USP3-219ENST00000561326 LRP6O75581 1613 aa13.17□□□□□ -0.3
USP3-219ENST00000561326 HOXB7P09629 217 aa13.17□□□□□ -0.3
USP3-219ENST00000561326 EIF4A1P60842 406 aaKnown RBP13.17□□□□□ -0.3
USP3-219ENST00000561326 TTC5Q8N0Z6 440 aa13.17□□□□□ -0.3
USP3-219ENST00000561326 ARHGAP45Q92619 1136 aa13.17□□□□□ -0.3
USP3-219ENST00000561326 PPP4R2Q9NY27 417 aa13.17□□□□□ -0.3
USP3-219ENST00000561326 ITGB4P16144 1822 aa13.17□□□□□ -0.3
USP3-219ENST00000561326 AFF2P51816 1311 aa13.16□□□□□ -0.3
USP3-219ENST00000561326 ZNF790Q6PG37 636 aa13.16□□□□□ -0.3
USP3-219ENST00000561326 MRPL50Q8N5N7 158 aaKnown RBP13.16□□□□□ -0.3
USP3-219ENST00000561326 TRPC5Q9UL62 973 aaPredicted RBP13.16□□□□□ -0.3
USP3-219ENST00000561326 NOB1Q9ULX3 412 aaKnown RBP13.16□□□□□ -0.3
USP3-219ENST00000561326 KRT24Q2M2I5 525 aa13.15□□□□□ -0.3
USP3-219ENST00000561326 FTSJ3Q8IY81 847 aaKnown RBP13.15□□□□□ -0.3
USP3-219ENST00000561326 TMOD3Q9NYL9 352 aa13.15□□□□□ -0.3
USP3-219ENST00000561326 MRC1P22897 1456 aa13.15□□□□□ -0.3
USP3-219ENST00000561326 TNS2Q63HR2 1409 aa13.14□□□□□ -0.31
USP3-219ENST00000561326 SLC4A2P04920 1241 aa13.14□□□□□ -0.31
USP3-219ENST00000561326 AAMPQ13685 434 aa13.14□□□□□ -0.31
USP3-219ENST00000561326 FAM98CQ17RN3 349 aaKnown RBP13.14□□□□□ -0.31
USP3-219ENST00000561326 ATF7IPQ6VMQ6 1270 aa13.14□□□□□ -0.31
USP3-219ENST00000561326 DZIP1LQ8IYY4 767 aaKnown RBP13.14□□□□□ -0.31
USP3-219ENST00000561326 GJD4Q96KN9 370 aaPredicted RBP13.14□□□□□ -0.31
USP3-219ENST00000561326 A0A0G2JS52 829 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 KCNQ3O43525 872 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 MYT1Q01538 1121 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 HDGFL1Q5TGJ6 251 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 FBXO41Q8TF61 875 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 FMNL2Q96PY5 1086 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 CRBNQ96SW2 442 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 API5Q9BZZ5 524 aaKnown RBP13.13□□□□□ -0.31
USP3-219ENST00000561326 PTPRCP08575 1304 aa13.13□□□□□ -0.31
USP3-219ENST00000561326 TCERG1O14776 1098 aaKnown RBP13.12□□□□□ -0.31
USP3-219ENST00000561326 GIGYF1O75420 1035 aaPredicted RBP13.12□□□□□ -0.31
USP3-219ENST00000561326 EIF2S2P20042 333 aaKnown RBP13.12□□□□□ -0.31
USP3-219ENST00000561326 SLC39A6Q13433 755 aa13.12□□□□□ -0.31
USP3-219ENST00000561326 C20orf194Q5TEA3 1177 aa13.12□□□□□ -0.31
USP3-219ENST00000561326 EXOC6Q8TAG9 804 aa13.12□□□□□ -0.31
USP3-219ENST00000561326 CHMP4BQ9H444 224 aaKnown RBP13.12□□□□□ -0.31
USP3-219ENST00000561326 QTRT2Q9H974 415 aaKnown RBP13.12□□□□□ -0.31
USP3-219ENST00000561326 HEG1Q9ULI3 1381 aa13.11□□□□□ -0.31
USP3-219ENST00000561326 SNRPA1P09661 255 aaKnown RBP13.11□□□□□ -0.31
USP3-219ENST00000561326 CLUAP1Q96AJ1 413 aa13.11□□□□□ -0.31
USP3-219ENST00000561326 TRIM27P14373 513 aa13.1□□□□□ -0.31
USP3-219ENST00000561326 ZNF772Q68DY9 489 aaPredicted RBP13.1□□□□□ -0.31
USP3-219ENST00000561326 PANK1Q8TE04 598 aa13.1□□□□□ -0.31
USP3-219ENST00000561326 ZNF496Q96IT1 587 aaPredicted RBP13.1□□□□□ -0.31
USP3-219ENST00000561326 CCDC136Q96JN2 1154 aa13.1□□□□□ -0.31
USP3-219ENST00000561326 DBF4Q9UBU7 674 aaPredicted RBP13.1□□□□□ -0.31
USP3-219ENST00000561326 TOGARAM1Q9Y4F4 1720 aa13.1□□□□□ -0.31
USP3-219ENST00000561326 ONECUT3O60422 494 aaPredicted RBP13.09□□□□□ -0.31
USP3-219ENST00000561326 ATRNO75882 1429 aa13.09□□□□□ -0.31
USP3-219ENST00000561326 MARCH10Q8NA82 808 aaPredicted RBP13.09□□□□□ -0.31
USP3-219ENST00000561326 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
USP3-219ENST00000561326 SYTL4Q96C24 671 aaPredicted RBP13.09□□□□□ -0.31
USP3-219ENST00000561326 TEX13AQ9BXU3 409 aaPredicted RBP13.09□□□□□ -0.31
USP3-219ENST00000561326 COG6Q9Y2V7 657 aa13.09□□□□□ -0.31
USP3-219ENST00000561326 UBR2Q8IWV8 1755 aa13.09□□□□□ -0.31
USP3-219ENST00000561326 PRIM1P49642 420 aaKnown RBP13.08□□□□□ -0.32
USP3-219ENST00000561326 MVPQ14764 893 aaKnown RBP13.08□□□□□ -0.32
USP3-219ENST00000561326 PIGBQ92521 554 aa13.08□□□□□ -0.32
USP3-219ENST00000561326 HYPKQ9NX55 129 aa13.08□□□□□ -0.32
USP3-219ENST00000561326 DDX19BQ9UMR2 479 aa13.08□□□□□ -0.32
USP3-219ENST00000561326 DOT1LQ8TEK3 1739 aa13.08□□□□□ -0.32
USP3-219ENST00000561326 PAPPAQ13219 1627 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 BCL9O00512 1426 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 THSD7AQ9UPZ6 1657 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 PTCD1O75127 700 aaKnown RBP13.06□□□□□ -0.32
USP3-219ENST00000561326 RLBP1P12271 317 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 FLIIQ13045 1269 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 FKBP5Q13451 457 aaPredicted RBP13.06□□□□□ -0.32
USP3-219ENST00000561326 ITPRIPQ8IWB1 547 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 VSIG10Q8N0Z9 540 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms