RNA–Protein interactions for RNA: ENST00000560055.5

RPL28-209, Transcript of ribosomal protein L28, humanhuman

TSL 3 BASIC

Gene RPL28, Length 670 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-209ENST00000560055 ATG3Q9NT62 314 aa22.32■■□□□ 1.16
RPL28-209ENST00000560055 PAPPAQ13219 1627 aa22.31■■□□□ 1.16
RPL28-209ENST00000560055 VIRMAQ69YN4 1812 aaKnown RBP22.31■■□□□ 1.16
RPL28-209ENST00000560055 NFE2L2Q16236 605 aa22.31■■□□□ 1.16
RPL28-209ENST00000560055 MAPK8IP3Q9UPT6 1336 aa22.31■■□□□ 1.16
RPL28-209ENST00000560055 HTATSF1O43719 755 aaKnown RBP22.3■■□□□ 1.16
RPL28-209ENST00000560055 PNISRQ8TF01 805 aaKnown RBP22.29■■□□□ 1.16
RPL28-209ENST00000560055 ANO8Q9HCE9 1232 aaPredicted RBP22.29■■□□□ 1.16
RPL28-209ENST00000560055 MRS2Q9HD23 443 aa22.29■■□□□ 1.16
RPL28-209ENST00000560055 RUNDC1Q96C34 613 aa22.28■■□□□ 1.16
RPL28-209ENST00000560055 CCNL1Q9UK58 526 aaPredicted RBP22.28■■□□□ 1.16
RPL28-209ENST00000560055 KCNQ4P56696 695 aa22.27■■□□□ 1.16
RPL28-209ENST00000560055 CCDC146Q8IYE0 955 aa22.27■■□□□ 1.16
RPL28-209ENST00000560055 LOC102724428A0A0B4J2F2 783 aa22.26■■□□□ 1.15
RPL28-209ENST00000560055 SIK1P57059 783 aa22.26■■□□□ 1.15
RPL28-209ENST00000560055 RTF1Q92541 710 aaKnown RBP22.26■■□□□ 1.15
RPL28-209ENST00000560055 DLG5Q8TDM6 1919 aa22.25■■□□□ 1.15
RPL28-209ENST00000560055 SIPA1L3O60292 1781 aaPredicted RBP22.25■■□□□ 1.15
RPL28-209ENST00000560055 TMPOP42166 694 aaKnown RBP22.25■■□□□ 1.15
RPL28-209ENST00000560055 MCM10Q7L590 875 aa22.25■■□□□ 1.15
RPL28-209ENST00000560055 TEFQ10587 303 aa22.24■■□□□ 1.15
RPL28-209ENST00000560055 DCTN1Q14203 1278 aa22.24■■□□□ 1.15
RPL28-209ENST00000560055 SLC4A9Q96Q91 983 aa22.24■■□□□ 1.15
RPL28-209ENST00000560055 AKT1S1Q96B36 256 aa22.23■■□□□ 1.15
RPL28-209ENST00000560055 PDGFDQ9GZP0 370 aaPredicted RBP22.23■■□□□ 1.15
RPL28-209ENST00000560055 SLC15A2Q16348 729 aa22.22■■□□□ 1.15
RPL28-209ENST00000560055 ZNF827Q17R98 1081 aa22.22■■□□□ 1.15
RPL28-209ENST00000560055 ZNF831Q5JPB2 1677 aa22.22■■□□□ 1.15
RPL28-209ENST00000560055 RIPK4P57078 832 aa22.21■■□□□ 1.15
RPL28-209ENST00000560055 SLC39A6Q13433 755 aa22.21■■□□□ 1.15
RPL28-209ENST00000560055 ITPK1Q13572 414 aa22.21■■□□□ 1.15
RPL28-209ENST00000560055 DIEXFQ68CQ4 756 aaKnown RBP22.21■■□□□ 1.15
RPL28-209ENST00000560055 STK32BQ9NY57 414 aa22.21■■□□□ 1.15
RPL28-209ENST00000560055 KCPQ6ZWJ8 1503 aa22.21■■□□□ 1.15
RPL28-209ENST00000560055 C5P01031 1676 aa22.2■■□□□ 1.15
RPL28-209ENST00000560055 CASZ1Q86V15 1759 aa22.2■■□□□ 1.14
RPL28-209ENST00000560055 TAF1LQ8IZX4 1826 aa22.2■■□□□ 1.14
RPL28-209ENST00000560055 PTCD1O75127 700 aaKnown RBP22.19■■□□□ 1.14
RPL28-209ENST00000560055 ATP6V1AP38606 617 aa22.19■■□□□ 1.14
RPL28-209ENST00000560055 RBM42Q9BTD8 480 aaKnown RBP22.19■■□□□ 1.14
RPL28-209ENST00000560055 RRP7AQ9Y3A4 280 aaKnown RBP22.19■■□□□ 1.14
RPL28-209ENST00000560055 UBR2Q8IWV8 1755 aa22.18■■□□□ 1.14
RPL28-209ENST00000560055 CICQ96RK0 1608 aaPredicted RBP22.18■■□□□ 1.14
RPL28-209ENST00000560055 HMGB2P26583 209 aaKnown RBP22.18■■□□□ 1.14
RPL28-209ENST00000560055 ZNF790Q6PG37 636 aa22.18■■□□□ 1.14
RPL28-209ENST00000560055 LINC00116Q8NCU8 138 aa22.18■■□□□ 1.14
RPL28-209ENST00000560055 BTBD11A6QL63 1104 aa22.17■■□□□ 1.14
RPL28-209ENST00000560055 LMOD3Q0VAK6 560 aa22.17■■□□□ 1.14
RPL28-209ENST00000560055 THUMPD2Q9BTF0 503 aaKnown RBP22.17■■□□□ 1.14
RPL28-209ENST00000560055 SPON1Q9HCB6 807 aa22.17■■□□□ 1.14
RPL28-209ENST00000560055 TRIM35Q9UPQ4 493 aa22.17■■□□□ 1.14
RPL28-209ENST00000560055 CCER2I3L3R5 266 aa22.16■■□□□ 1.14
RPL28-209ENST00000560055 APAF1O14727 1248 aa22.16■■□□□ 1.14
RPL28-209ENST00000560055 C4BP0C0L5 1744 aa22.16■■□□□ 1.14
RPL28-209ENST00000560055 TAF7Q15545 349 aaPredicted RBP22.15■■□□□ 1.14
RPL28-209ENST00000560055 NEUROD2Q15784 382 aa22.14■■□□□ 1.13
RPL28-209ENST00000560055 TTC5Q8N0Z6 440 aa22.14■■□□□ 1.13
RPL28-209ENST00000560055 VSIG10Q8N0Z9 540 aa22.14■■□□□ 1.13
RPL28-209ENST00000560055 COL5A3P25940 1745 aaPredicted RBP22.14■■□□□ 1.13
RPL28-209ENST00000560055 TJP1Q07157 1748 aa22.14■■□□□ 1.13
RPL28-209ENST00000560055 QSER1Q2KHR3 1735 aa22.14■■□□□ 1.13
RPL28-209ENST00000560055 KCNQ3O43525 872 aa22.13■■□□□ 1.13
RPL28-209ENST00000560055 ZBTB7AO95365 584 aa22.13■■□□□ 1.13
RPL28-209ENST00000560055 ZNF496Q96IT1 587 aaPredicted RBP22.13■■□□□ 1.13
RPL28-209ENST00000560055 TUBGCP6Q96RT7 1819 aa22.13■■□□□ 1.13
RPL28-209ENST00000560055 PNPLA7Q6ZV29 1317 aa22.12■■□□□ 1.13
RPL28-209ENST00000560055 TFCP2L1Q9NZI6 479 aa22.12■■□□□ 1.13
RPL28-209ENST00000560055 CNTNAP4Q9C0A0 1308 aa22.11■■□□□ 1.13
RPL28-209ENST00000560055 PPP1R1BQ9UD71 204 aaPredicted RBP22.11■■□□□ 1.13
RPL28-209ENST00000560055 HEG1Q9ULI3 1381 aa22.11■■□□□ 1.13
RPL28-209ENST00000560055 RC3H1Q5TC82 1133 aaKnown RBP22.1■■□□□ 1.13
RPL28-209ENST00000560055 AMIGO3Q86WK7 504 aa22.1■■□□□ 1.13
RPL28-209ENST00000560055 DNAJC10Q8IXB1 793 aa22.1■■□□□ 1.13
RPL28-209ENST00000560055 FAM9BQ8IZU0 186 aa22.1■■□□□ 1.13
RPL28-209ENST00000560055 AK7Q96M32 723 aa22.1■■□□□ 1.13
RPL28-209ENST00000560055 FMNL2Q96PY5 1086 aa22.1■■□□□ 1.13
RPL28-209ENST00000560055 MIS18AQ9NYP9 233 aa22.1■■□□□ 1.13
RPL28-209ENST00000560055 ATF5Q9Y2D1 282 aaPredicted RBP22.1■■□□□ 1.13
RPL28-209ENST00000560055 NCBP3Q53F19 620 aaKnown RBP22.09■■□□□ 1.13
RPL28-209ENST00000560055 KDM3BQ7LBC6 1761 aa22.09■■□□□ 1.13
RPL28-209ENST00000560055 UBR3Q6ZT12 1888 aa22.09■■□□□ 1.13
RPL28-209ENST00000560055 BABAM1Q9NWV8 329 aa22.08■■□□□ 1.13
RPL28-209ENST00000560055 MYH14Q7Z406 1995 aaKnown RBP22.08■■□□□ 1.12
RPL28-209ENST00000560055 CYP19A1P11511 503 aaPredicted RBP22.07■■□□□ 1.12
RPL28-209ENST00000560055 MIER1Q8N108 512 aa22.07■■□□□ 1.12
RPL28-209ENST00000560055 SSFA2P28290 1259 aa22.06■■□□□ 1.12
RPL28-209ENST00000560055 PTGER2P43116 358 aa22.06■■□□□ 1.12
RPL28-209ENST00000560055 CRKLP46109 303 aaKnown RBP22.06■■□□□ 1.12
RPL28-209ENST00000560055 CCDC27Q2M243 656 aa22.06■■□□□ 1.12
RPL28-209ENST00000560055 GNPATO15228 680 aa22.05■■□□□ 1.12
RPL28-209ENST00000560055 INTS5Q6P9B9 1019 aaKnown RBP22.05■■□□□ 1.12
RPL28-209ENST00000560055 COL23A1Q86Y22 540 aaPredicted RBP22.05■■□□□ 1.12
RPL28-209ENST00000560055 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.04■■□□□ 1.12
RPL28-209ENST00000560055 CHL1O00533 1208 aa22.04■■□□□ 1.12
RPL28-209ENST00000560055 FLAD1Q8NFF5 587 aa22.04■■□□□ 1.12
RPL28-209ENST00000560055 TEX13AQ9BXU3 409 aaPredicted RBP22.04■■□□□ 1.12
RPL28-209ENST00000560055 TSPYL4Q9UJ04 414 aa22.04■■□□□ 1.12
RPL28-209ENST00000560055 RPS6KA4O75676 772 aa22.03■■□□□ 1.12
RPL28-209ENST00000560055 EIF4A1P60842 406 aaKnown RBP22.03■■□□□ 1.12
RPL28-209ENST00000560055 SMIM5Q71RC9 77 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms