RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 MARCH10Q8NA82 808 aaPredicted RBP12.35□□□□□ -0.43
HERC1-206ENST00000559996 THUMPD2Q9BTF0 503 aaKnown RBP12.35□□□□□ -0.43
HERC1-206ENST00000559996 CCDC9Q9Y3X0 531 aaKnown RBP12.35□□□□□ -0.43
HERC1-206ENST00000559996 ADAMTS7Q9UKP4 1686 aa12.35□□□□□ -0.43
HERC1-206ENST00000559996 RNMTO43148 476 aaKnown RBP12.34□□□□□ -0.43
HERC1-206ENST00000559996 ZNF853P0CG23 659 aa12.34□□□□□ -0.43
HERC1-206ENST00000559996 IFNL2Q8IZJ0 200 aa12.34□□□□□ -0.43
HERC1-206ENST00000559996 CDCA7LQ96GN5 454 aa12.34□□□□□ -0.43
HERC1-206ENST00000559996 KDM6AO15550 1401 aaPredicted RBP12.34□□□□□ -0.43
HERC1-206ENST00000559996 MAP3K5Q99683 1374 aa12.33□□□□□ -0.44
HERC1-206ENST00000559996 NEFMP07197 916 aa12.33□□□□□ -0.44
HERC1-206ENST00000559996 RBM6P78332 1123 aaKnown RBP12.33□□□□□ -0.44
HERC1-206ENST00000559996 MPRIPQ6WCQ1 1025 aa12.33□□□□□ -0.44
HERC1-206ENST00000559996 WDR63Q8IWG1 891 aa12.33□□□□□ -0.44
HERC1-206ENST00000559996 DDX54Q8TDD1 881 aaKnown RBP12.33□□□□□ -0.44
HERC1-206ENST00000559996 LRRC37A3O60309 1634 aa12.33□□□□□ -0.44
HERC1-206ENST00000559996 TNS2Q63HR2 1409 aa12.32□□□□□ -0.44
HERC1-206ENST00000559996 SLFN5Q08AF3 891 aa12.32□□□□□ -0.44
HERC1-206ENST00000559996 DDB1Q16531 1140 aa12.32□□□□□ -0.44
HERC1-206ENST00000559996 SEPT12Q8IYM1 358 aa12.32□□□□□ -0.44
HERC1-206ENST00000559996 PCDH11XQ9BZA7 1347 aa12.32□□□□□ -0.44
HERC1-206ENST00000559996 PCDH11YQ9BZA8 1340 aa12.32□□□□□ -0.44
HERC1-206ENST00000559996 CHL1O00533 1208 aa12.3□□□□□ -0.44
HERC1-206ENST00000559996 C1orf141Q5JVX7 400 aa12.3□□□□□ -0.44
HERC1-206ENST00000559996 DUSP27Q5VZP5 1158 aa12.3□□□□□ -0.44
HERC1-206ENST00000559996 DCAF5Q96JK2 942 aa12.3□□□□□ -0.44
HERC1-206ENST00000559996 IL16Q14005 1332 aa12.3□□□□□ -0.44
HERC1-206ENST00000559996 SCN11AQ9UI33 1791 aa12.3□□□□□ -0.44
HERC1-206ENST00000559996 VIRMAQ69YN4 1812 aaKnown RBP12.3□□□□□ -0.44
HERC1-206ENST00000559996 GABBR2O75899 941 aa12.29□□□□□ -0.44
HERC1-206ENST00000559996 RXRBP28702 533 aa12.29□□□□□ -0.44
HERC1-206ENST00000559996 GOLGA2Q08379 1002 aa12.29□□□□□ -0.44
HERC1-206ENST00000559996 LMOD3Q0VAK6 560 aa12.29□□□□□ -0.44
HERC1-206ENST00000559996 TOGARAM1Q9Y4F4 1720 aa12.28□□□□□ -0.44
HERC1-206ENST00000559996 BRWD3Q6RI45 1802 aa12.28□□□□□ -0.44
HERC1-206ENST00000559996 PDE3BQ13370 1112 aa12.28□□□□□ -0.44
HERC1-206ENST00000559996 RTF1Q92541 710 aaKnown RBP12.28□□□□□ -0.44
HERC1-206ENST00000559996 CFAP44Q96MT7 982 aa12.28□□□□□ -0.44
HERC1-206ENST00000559996 SLC52A2Q9HAB3 445 aa12.28□□□□□ -0.44
HERC1-206ENST00000559996 SIPA1L3O60292 1781 aaPredicted RBP12.28□□□□□ -0.44
HERC1-206ENST00000559996 ERVV-2B6SEH9 535 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 KCNQ3O43525 872 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 HSP90AB1P08238 724 aaKnown RBP12.27□□□□□ -0.45
HERC1-206ENST00000559996 TAF7Q15545 349 aaPredicted RBP12.27□□□□□ -0.45
HERC1-206ENST00000559996 FAM182BQ5T319 152 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 NFATC2IPQ8NCF5 419 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 IFT57Q9NWB7 429 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 MIS18AQ9NYP9 233 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 BCL9O00512 1426 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 MRC1P22897 1456 aa12.27□□□□□ -0.45
HERC1-206ENST00000559996 PTF1AQ7RTS3 328 aa12.26□□□□□ -0.45
HERC1-206ENST00000559996 MBIPQ9NS73 344 aa12.26□□□□□ -0.45
HERC1-206ENST00000559996 RGS12O14924 1447 aa12.26□□□□□ -0.45
HERC1-206ENST00000559996 E9PSI1 815 aa12.25□□□□□ -0.45
HERC1-206ENST00000559996 PIGBQ92521 554 aa12.25□□□□□ -0.45
HERC1-206ENST00000559996 TSR2Q969E8 191 aaKnown RBP12.25□□□□□ -0.45
HERC1-206ENST00000559996 BABAM1Q9NWV8 329 aa12.25□□□□□ -0.45
HERC1-206ENST00000559996 FARP1Q9Y4F1 1045 aaPredicted RBP12.25□□□□□ -0.45
HERC1-206ENST00000559996 KCNQ2O43526 872 aa12.24□□□□□ -0.45
HERC1-206ENST00000559996 CD44P16070 742 aaKnown RBP12.24□□□□□ -0.45
HERC1-206ENST00000559996 ITGB4P16144 1822 aa12.24□□□□□ -0.45
HERC1-206ENST00000559996 PRIM1P49642 420 aaKnown RBP12.24□□□□□ -0.45
HERC1-206ENST00000559996 GNAI1P63096 354 aa12.24□□□□□ -0.45
HERC1-206ENST00000559996 KRT27Q7Z3Y8 459 aa12.24□□□□□ -0.45
HERC1-206ENST00000559996 FANCIQ9NVI1 1328 aa12.24□□□□□ -0.45
HERC1-206ENST00000559996 HEG1Q9ULI3 1381 aa12.23□□□□□ -0.45
HERC1-206ENST00000559996 SLC39A6Q13433 755 aa12.23□□□□□ -0.45
HERC1-206ENST00000559996 KRT24Q2M2I5 525 aa12.23□□□□□ -0.45
HERC1-206ENST00000559996 ACSBG1Q96GR2 724 aa12.23□□□□□ -0.45
HERC1-206ENST00000559996 BTBD11A6QL63 1104 aa12.22□□□□□ -0.45
HERC1-206ENST00000559996 CABP4P57796 275 aa12.22□□□□□ -0.45
HERC1-206ENST00000559996 EIF4A1P60842 406 aaKnown RBP12.22□□□□□ -0.45
HERC1-206ENST00000559996 CALD1Q05682 793 aaKnown RBP12.22□□□□□ -0.45
HERC1-206ENST00000559996 TEFQ10587 303 aa12.22□□□□□ -0.45
HERC1-206ENST00000559996 TSPYL6Q8N831 410 aa12.22□□□□□ -0.45
HERC1-206ENST00000559996 C8orf58Q8NAV2 365 aa12.22□□□□□ -0.45
HERC1-206ENST00000559996 LAS1LQ9Y4W2 734 aaKnown RBP12.22□□□□□ -0.45
HERC1-206ENST00000559996 KDM3BQ7LBC6 1761 aa12.22□□□□□ -0.45
HERC1-206ENST00000559996 SBF2Q86WG5 1849 aa12.21□□□□□ -0.45
HERC1-206ENST00000559996 A0A0G2JS52 829 aa12.21□□□□□ -0.45
HERC1-206ENST00000559996 MYT1Q01538 1121 aa12.21□□□□□ -0.45
HERC1-206ENST00000559996 EXOSC9Q06265 439 aaKnown RBP12.21□□□□□ -0.45
HERC1-206ENST00000559996 ZNF790Q6PG37 636 aa12.21□□□□□ -0.45
HERC1-206ENST00000559996 ATG3Q9NT62 314 aa12.21□□□□□ -0.45
HERC1-206ENST00000559996 ASAP1Q9ULH1 1129 aa12.21□□□□□ -0.45
HERC1-206ENST00000559996 DOT1LQ8TEK3 1739 aa12.2□□□□□ -0.46
HERC1-206ENST00000559996 VAMP4O75379 141 aa12.2□□□□□ -0.46
HERC1-206ENST00000559996 MYH16Q9H6N6 1097 aa12.2□□□□□ -0.46
HERC1-206ENST00000559996 TSPYL4Q9UJ04 414 aa12.2□□□□□ -0.46
HERC1-206ENST00000559996 PRAMEF22A3QJZ6 481 aa12.19□□□□□ -0.46
HERC1-206ENST00000559996 SPDYE4A6NLX3 237 aa12.19□□□□□ -0.46
HERC1-206ENST00000559996 FAM196AQ6ZSG2 479 aa12.19□□□□□ -0.46
HERC1-206ENST00000559996 ZNF496Q96IT1 587 aaPredicted RBP12.19□□□□□ -0.46
HERC1-206ENST00000559996 SLC4A9Q96Q91 983 aa12.19□□□□□ -0.46
HERC1-206ENST00000559996 TMOD3Q9NYL9 352 aa12.19□□□□□ -0.46
HERC1-206ENST00000559996 PAPPAQ13219 1627 aa12.19□□□□□ -0.46
HERC1-206ENST00000559996 KCPQ6ZWJ8 1503 aa12.18□□□□□ -0.46
HERC1-206ENST00000559996 KAT6BQ8WYB5 2073 aa12.18□□□□□ -0.46
HERC1-206ENST00000559996 GIGYF1O75420 1035 aaPredicted RBP12.17□□□□□ -0.46
HERC1-206ENST00000559996 UBR2Q8IWV8 1755 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms