RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 BAG6P46379 1132 aa28.57■■■□□ 2.16
SNX1-206ENST00000559389 LMOD3Q0VAK6 560 aa28.57■■■□□ 2.16
SNX1-206ENST00000559389 MCM10Q7L590 875 aa28.57■■■□□ 2.16
SNX1-206ENST00000559389 DCTN1Q14203 1278 aa28.56■■■□□ 2.16
SNX1-206ENST00000559389 DEFB132Q7Z7B7 95 aa28.54■■■□□ 2.16
SNX1-206ENST00000559389 NFATC2IPQ8NCF5 419 aa28.54■■■□□ 2.16
SNX1-206ENST00000559389 PALLDQ8WX93 1383 aa28.53■■■□□ 2.16
SNX1-206ENST00000559389 PLSCR1O15162 318 aa28.53■■■□□ 2.16
SNX1-206ENST00000559389 TEFQ10587 303 aa28.53■■■□□ 2.16
SNX1-206ENST00000559389 NEUROD2Q15784 382 aa28.53■■■□□ 2.16
SNX1-206ENST00000559389 TRIM35Q9UPQ4 493 aa28.53■■■□□ 2.16
SNX1-206ENST00000559389 UBR2Q8IWV8 1755 aa28.52■■■□□ 2.16
SNX1-206ENST00000559389 THUMPD2Q9BTF0 503 aaKnown RBP28.51■■■□□ 2.15
SNX1-206ENST00000559389 NUP188Q5SRE5 1749 aa28.51■■■□□ 2.15
SNX1-206ENST00000559389 EN1Q05925 392 aaPredicted RBP28.5■■■□□ 2.15
SNX1-206ENST00000559389 CAMKK2Q96RR4 588 aa28.5■■■□□ 2.15
SNX1-206ENST00000559389 SMARCC1Q92922 1105 aaPredicted RBP28.49■■■□□ 2.15
SNX1-206ENST00000559389 ATG3Q9NT62 314 aa28.49■■■□□ 2.15
SNX1-206ENST00000559389 ASAP1Q9ULH1 1129 aa28.49■■■□□ 2.15
SNX1-206ENST00000559389 KDM3BQ7LBC6 1761 aa28.49■■■□□ 2.15
SNX1-206ENST00000559389 KCPQ6ZWJ8 1503 aa28.48■■■□□ 2.15
SNX1-206ENST00000559389 ZNF831Q5JPB2 1677 aa28.48■■■□□ 2.15
SNX1-206ENST00000559389 CICQ96RK0 1608 aaPredicted RBP28.48■■■□□ 2.15
SNX1-206ENST00000559389 NCBP3Q53F19 620 aaKnown RBP28.48■■■□□ 2.15
SNX1-206ENST00000559389 EZH2Q15910 746 aaKnown RBP28.46■■■□□ 2.15
SNX1-206ENST00000559389 CCDC27Q2M243 656 aa28.46■■■□□ 2.15
SNX1-206ENST00000559389 SENP3-EIF4A1A0A087X0R7 540 aa28.45■■■□□ 2.14
SNX1-206ENST00000559389 TXNRD1Q16881 649 aa28.43■■■□□ 2.14
SNX1-206ENST00000559389 C5P01031 1676 aa28.42■■■□□ 2.14
SNX1-206ENST00000559389 TAF7Q15545 349 aaPredicted RBP28.42■■■□□ 2.14
SNX1-206ENST00000559389 PROM2Q8N271 834 aa28.42■■■□□ 2.14
SNX1-206ENST00000559389 TJP1Q07157 1748 aa28.42■■■□□ 2.14
SNX1-206ENST00000559389 BTBD11A6QL63 1104 aa28.41■■■□□ 2.14
SNX1-206ENST00000559389 SLC39A6Q13433 755 aa28.41■■■□□ 2.14
SNX1-206ENST00000559389 NGEFQ8N5V2 710 aa28.41■■■□□ 2.14
SNX1-206ENST00000559389 TAF1LQ8IZX4 1826 aa28.41■■■□□ 2.14
SNX1-206ENST00000559389 SLC27A3Q5K4L6 730 aa28.4■■■□□ 2.14
SNX1-206ENST00000559389 LOC102724428A0A0B4J2F2 783 aa28.39■■■□□ 2.14
SNX1-206ENST00000559389 SIK1P57059 783 aa28.39■■■□□ 2.14
SNX1-206ENST00000559389 ZNF790Q6PG37 636 aa28.39■■■□□ 2.14
SNX1-206ENST00000559389 WWC1Q8IX03 1113 aa28.39■■■□□ 2.14
SNX1-206ENST00000559389 CCNL1Q9UK58 526 aaPredicted RBP28.39■■■□□ 2.14
SNX1-206ENST00000559389 COL5A3P25940 1745 aaPredicted RBP28.38■■■□□ 2.13
SNX1-206ENST00000559389 LRRC4BQ9NT99 713 aa28.38■■■□□ 2.13
SNX1-206ENST00000559389 CALD1Q05682 793 aaKnown RBP28.37■■■□□ 2.13
SNX1-206ENST00000559389 TTC5Q8N0Z6 440 aa28.37■■■□□ 2.13
SNX1-206ENST00000559389 KCNQ3O43525 872 aa28.35■■■□□ 2.13
SNX1-206ENST00000559389 PTCD1O75127 700 aaKnown RBP28.35■■■□□ 2.13
SNX1-206ENST00000559389 SLC4A9Q96Q91 983 aa28.35■■■□□ 2.13
SNX1-206ENST00000559389 BABAM1Q9NWV8 329 aa28.35■■■□□ 2.13
SNX1-206ENST00000559389 SALL2Q9Y467 1007 aaPredicted RBP28.35■■■□□ 2.13
SNX1-206ENST00000559389 KCNQ4P56696 695 aa28.34■■■□□ 2.13
SNX1-206ENST00000559389 RBM42Q9BTD8 480 aaKnown RBP28.34■■■□□ 2.13
SNX1-206ENST00000559389 MIS18AQ9NYP9 233 aa28.34■■■□□ 2.13
SNX1-206ENST00000559389 C4BP0C0L5 1744 aa28.34■■■□□ 2.13
SNX1-206ENST00000559389 ZNF496Q96IT1 587 aaPredicted RBP28.33■■■□□ 2.13
SNX1-206ENST00000559389 TSPYL4Q9UJ04 414 aa28.33■■■□□ 2.13
SNX1-206ENST00000559389 ZNF521Q96K83 1311 aa28.33■■■□□ 2.13
SNX1-206ENST00000559389 HEG1Q9ULI3 1381 aa28.33■■■□□ 2.13
SNX1-206ENST00000559389 CHL1O00533 1208 aa28.32■■■□□ 2.12
SNX1-206ENST00000559389 ITPK1Q13572 414 aa28.32■■■□□ 2.12
SNX1-206ENST00000559389 IFT57Q9NWB7 429 aa28.32■■■□□ 2.12
SNX1-206ENST00000559389 LAMB4A4D0S4 1761 aa28.32■■■□□ 2.12
SNX1-206ENST00000559389 ZNF853P0CG23 659 aa28.31■■■□□ 2.12
SNX1-206ENST00000559389 ATP6V1AP38606 617 aa28.31■■■□□ 2.12
SNX1-206ENST00000559389 CFAP44Q96MT7 982 aa28.31■■■□□ 2.12
SNX1-206ENST00000559389 FMNL2Q96PY5 1086 aa28.31■■■□□ 2.12
SNX1-206ENST00000559389 IL16Q14005 1332 aa28.31■■■□□ 2.12
SNX1-206ENST00000559389 VSIG10Q8N0Z9 540 aa28.3■■■□□ 2.12
SNX1-206ENST00000559389 WDR63Q8IWG1 891 aa28.29■■■□□ 2.12
SNX1-206ENST00000559389 ANO8Q9HCE9 1232 aaPredicted RBP28.29■■■□□ 2.12
SNX1-206ENST00000559389 GNAI1P63096 354 aa28.28■■■□□ 2.12
SNX1-206ENST00000559389 LAS1LQ9Y4W2 734 aaKnown RBP28.28■■■□□ 2.12
SNX1-206ENST00000559389 EIF4A1P60842 406 aaKnown RBP28.27■■■□□ 2.12
SNX1-206ENST00000559389 LINC00116Q8NCU8 138 aa28.27■■■□□ 2.12
SNX1-206ENST00000559389 TUBGCP6Q96RT7 1819 aa28.27■■■□□ 2.12
SNX1-206ENST00000559389 QSER1Q2KHR3 1735 aa28.26■■■□□ 2.12
SNX1-206ENST00000559389 MBIPQ9NS73 344 aa28.26■■■□□ 2.11
SNX1-206ENST00000559389 HMGB2P26583 209 aaKnown RBP28.25■■■□□ 2.11
SNX1-206ENST00000559389 DNAJC10Q8IXB1 793 aa28.25■■■□□ 2.11
SNX1-206ENST00000559389 CNTNAP4Q9C0A0 1308 aa28.23■■■□□ 2.11
SNX1-206ENST00000559389 HNRNPUQ00839 825 aaKnown RBP eCLIP28.23■■■□□ 2.11
SNX1-206ENST00000559389 ZNF827Q17R98 1081 aa28.23■■■□□ 2.11
SNX1-206ENST00000559389 AKT1S1Q96B36 256 aa28.23■■■□□ 2.11
SNX1-206ENST00000559389 UBR3Q6ZT12 1888 aa28.22■■■□□ 2.11
SNX1-206ENST00000559389 SNRPA1P09661 255 aaKnown RBP28.21■■■□□ 2.11
SNX1-206ENST00000559389 NBPF14Q5TI25 921 aa28.21■■■□□ 2.11
SNX1-206ENST00000559389 STK32BQ9NY57 414 aa28.21■■■□□ 2.11
SNX1-206ENST00000559389 MYH14Q7Z406 1995 aaKnown RBP28.2■■■□□ 2.1
SNX1-206ENST00000559389 PRAMEF22A3QJZ6 481 aa28.19■■■□□ 2.1
SNX1-206ENST00000559389 GIGYF1O75420 1035 aaPredicted RBP28.19■■■□□ 2.1
SNX1-206ENST00000559389 CYP19A1P11511 503 aaPredicted RBP28.19■■■□□ 2.1
SNX1-206ENST00000559389 TSR2Q969E8 191 aaKnown RBP28.19■■■□□ 2.1
SNX1-206ENST00000559389 TEX13AQ9BXU3 409 aaPredicted RBP28.19■■■□□ 2.1
SNX1-206ENST00000559389 SPINK5Q9NQ38 1064 aaPredicted RBP28.19■■■□□ 2.1
SNX1-206ENST00000559389 FANCIQ9NVI1 1328 aa28.18■■■□□ 2.1
SNX1-206ENST00000559389 CRKLP46109 303 aaKnown RBP28.18■■■□□ 2.1
SNX1-206ENST00000559389 SLC15A2Q16348 729 aa28.18■■■□□ 2.1
SNX1-206ENST00000559389 GOLGA2Q08379 1002 aa28.17■■■□□ 2.1
SNX1-206ENST00000559389 KRT24Q2M2I5 525 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms