RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 PAPPAQ13219 1627 aa16.38■□□□□ 0.21
SMAD3-205ENST00000558428 MRC1P22897 1456 aa16.38■□□□□ 0.21
SMAD3-205ENST00000558428 STK32BQ9NY57 414 aa16.38■□□□□ 0.21
SMAD3-205ENST00000558428 RTF1Q92541 710 aaKnown RBP16.37■□□□□ 0.21
SMAD3-205ENST00000558428 TAF1LQ8IZX4 1826 aa16.37■□□□□ 0.21
SMAD3-205ENST00000558428 LOC102724428A0A0B4J2F2 783 aa16.36■□□□□ 0.21
SMAD3-205ENST00000558428 SIK1P57059 783 aa16.36■□□□□ 0.21
SMAD3-205ENST00000558428 TEFQ10587 303 aa16.36■□□□□ 0.21
SMAD3-205ENST00000558428 CCDC184Q52MB2 194 aa16.36■□□□□ 0.21
SMAD3-205ENST00000558428 IL17REQ8NFR9 667 aa16.36■□□□□ 0.21
SMAD3-205ENST00000558428 ADAMTS8Q9UP79 889 aa16.36■□□□□ 0.21
SMAD3-205ENST00000558428 C5P01031 1676 aa16.36■□□□□ 0.21
SMAD3-205ENST00000558428 NFE2L2Q16236 605 aa16.35■□□□□ 0.21
SMAD3-205ENST00000558428 SLC15A2Q16348 729 aa16.35■□□□□ 0.21
SMAD3-205ENST00000558428 CCDC146Q8IYE0 955 aa16.35■□□□□ 0.21
SMAD3-205ENST00000558428 RBM42Q9BTD8 480 aaKnown RBP16.35■□□□□ 0.21
SMAD3-205ENST00000558428 SIPA1L3O60292 1781 aaPredicted RBP16.34■□□□□ 0.21
SMAD3-205ENST00000558428 ZNF827Q17R98 1081 aa16.34■□□□□ 0.21
SMAD3-205ENST00000558428 MRS2Q9HD23 443 aa16.34■□□□□ 0.21
SMAD3-205ENST00000558428 CEMIPQ8WUJ3 1361 aa16.34■□□□□ 0.21
SMAD3-205ENST00000558428 HTATSF1O43719 755 aaKnown RBP16.33■□□□□ 0.2
SMAD3-205ENST00000558428 HMGB2P26583 209 aaKnown RBP16.33■□□□□ 0.2
SMAD3-205ENST00000558428 ATP6V1AP38606 617 aa16.33■□□□□ 0.2
SMAD3-205ENST00000558428 DCTN1Q14203 1278 aa16.33■□□□□ 0.2
SMAD3-205ENST00000558428 MCM10Q7L590 875 aa16.33■□□□□ 0.2
SMAD3-205ENST00000558428 SRCAPQ6ZRS2 3230 aa16.32■□□□□ 0.2
SMAD3-205ENST00000558428 PTCD1O75127 700 aaKnown RBP16.32■□□□□ 0.2
SMAD3-205ENST00000558428 SLC39A6Q13433 755 aa16.32■□□□□ 0.2
SMAD3-205ENST00000558428 AKT1S1Q96B36 256 aa16.32■□□□□ 0.2
SMAD3-205ENST00000558428 RUNDC1Q96C34 613 aa16.32■□□□□ 0.2
SMAD3-205ENST00000558428 TUBGCP6Q96RT7 1819 aa16.31■□□□□ 0.2
SMAD3-205ENST00000558428 C4BP0C0L5 1744 aa16.31■□□□□ 0.2
SMAD3-205ENST00000558428 ZNF831Q5JPB2 1677 aa16.3■□□□□ 0.2
SMAD3-205ENST00000558428 TMPOP42166 694 aaKnown RBP16.3■□□□□ 0.2
SMAD3-205ENST00000558428 RIPK4P57078 832 aa16.3■□□□□ 0.2
SMAD3-205ENST00000558428 ITPK1Q13572 414 aa16.3■□□□□ 0.2
SMAD3-205ENST00000558428 SLC4A9Q96Q91 983 aa16.3■□□□□ 0.2
SMAD3-205ENST00000558428 TFCP2L1Q9NZI6 479 aa16.3■□□□□ 0.2
SMAD3-205ENST00000558428 QSER1Q2KHR3 1735 aa16.3■□□□□ 0.2
SMAD3-205ENST00000558428 NEUROD2Q15784 382 aa16.29■□□□□ 0.2
SMAD3-205ENST00000558428 TTC5Q8N0Z6 440 aa16.29■□□□□ 0.2
SMAD3-205ENST00000558428 LINC00116Q8NCU8 138 aa16.29■□□□□ 0.2
SMAD3-205ENST00000558428 RRP7AQ9Y3A4 280 aaKnown RBP16.29■□□□□ 0.2
SMAD3-205ENST00000558428 CASZ1Q86V15 1759 aa16.28■□□□□ 0.2
SMAD3-205ENST00000558428 UBR2Q8IWV8 1755 aa16.28■□□□□ 0.2
SMAD3-205ENST00000558428 BTBD11A6QL63 1104 aa16.28■□□□□ 0.2
SMAD3-205ENST00000558428 AK7Q96M32 723 aa16.28■□□□□ 0.2
SMAD3-205ENST00000558428 KCPQ6ZWJ8 1503 aa16.28■□□□□ 0.2
SMAD3-205ENST00000558428 COL5A3P25940 1745 aaPredicted RBP16.28■□□□□ 0.2
SMAD3-205ENST00000558428 LMOD3Q0VAK6 560 aa16.27■□□□□ 0.2
SMAD3-205ENST00000558428 ZNF790Q6PG37 636 aa16.27■□□□□ 0.2
SMAD3-205ENST00000558428 PNISRQ8TF01 805 aaKnown RBP16.27■□□□□ 0.2
SMAD3-205ENST00000558428 THUMPD2Q9BTF0 503 aaKnown RBP16.27■□□□□ 0.2
SMAD3-205ENST00000558428 PDGFDQ9GZP0 370 aaPredicted RBP16.27■□□□□ 0.2
SMAD3-205ENST00000558428 TJP1Q07157 1748 aa16.27■□□□□ 0.19
SMAD3-205ENST00000558428 PNPLA7Q6ZV29 1317 aa16.26■□□□□ 0.19
SMAD3-205ENST00000558428 UBR3Q6ZT12 1888 aa16.26■□□□□ 0.19
SMAD3-205ENST00000558428 TAF7Q15545 349 aaPredicted RBP16.25■□□□□ 0.19
SMAD3-205ENST00000558428 CICQ96RK0 1608 aaPredicted RBP16.25■□□□□ 0.19
SMAD3-205ENST00000558428 MYH14Q7Z406 1995 aaKnown RBP16.25■□□□□ 0.19
SMAD3-205ENST00000558428 APAF1O14727 1248 aa16.24■□□□□ 0.19
SMAD3-205ENST00000558428 KCNQ3O43525 872 aa16.24■□□□□ 0.19
SMAD3-205ENST00000558428 DNAJC10Q8IXB1 793 aa16.24■□□□□ 0.19
SMAD3-205ENST00000558428 CNTNAP4Q9C0A0 1308 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 GNPATO15228 680 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 MSH5O43196 834 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 PHF14O94880 888 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 ZBTB7AO95365 584 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 DIEXFQ68CQ4 756 aaKnown RBP16.23■□□□□ 0.19
SMAD3-205ENST00000558428 VSIG10Q8N0Z9 540 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 ZNF496Q96IT1 587 aaPredicted RBP16.23■□□□□ 0.19
SMAD3-205ENST00000558428 FMNL2Q96PY5 1086 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 LRP5O75197 1615 aa16.23■□□□□ 0.19
SMAD3-205ENST00000558428 CRKLP46109 303 aaKnown RBP16.22■□□□□ 0.19
SMAD3-205ENST00000558428 RC3H1Q5TC82 1133 aaKnown RBP16.22■□□□□ 0.19
SMAD3-205ENST00000558428 AMIGO3Q86WK7 504 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 COL23A1Q86Y22 540 aaPredicted RBP16.22■□□□□ 0.19
SMAD3-205ENST00000558428 FAM9BQ8IZU0 186 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 FLAD1Q8NFF5 587 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 SPON1Q9HCB6 807 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 MIS18AQ9NYP9 233 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 TRIM35Q9UPQ4 493 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 KDM3BQ7LBC6 1761 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 HEG1Q9ULI3 1381 aa16.22■□□□□ 0.19
SMAD3-205ENST00000558428 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.21■□□□□ 0.19
SMAD3-205ENST00000558428 SSFA2P28290 1259 aa16.21■□□□□ 0.19
SMAD3-205ENST00000558428 SMIM5Q71RC9 77 aa16.21■□□□□ 0.19
SMAD3-205ENST00000558428 RTCBQ9Y3I0 505 aaKnown RBP16.21■□□□□ 0.19
SMAD3-205ENST00000558428 CYP19A1P11511 503 aaPredicted RBP16.2■□□□□ 0.18
SMAD3-205ENST00000558428 SLC16A10Q8TF71 515 aa16.2■□□□□ 0.18
SMAD3-205ENST00000558428 MTFR1LQ9H019 292 aa16.2■□□□□ 0.18
SMAD3-205ENST00000558428 ATF5Q9Y2D1 282 aaPredicted RBP16.2■□□□□ 0.18
SMAD3-205ENST00000558428 RPS6KA4O75676 772 aa16.19■□□□□ 0.18
SMAD3-205ENST00000558428 TEX13AQ9BXU3 409 aaPredicted RBP16.19■□□□□ 0.18
SMAD3-205ENST00000558428 TSPYL4Q9UJ04 414 aa16.19■□□□□ 0.18
SMAD3-205ENST00000558428 SENP3-EIF4A1A0A087X0R7 540 aa16.18■□□□□ 0.18
SMAD3-205ENST00000558428 STARD3NLO95772 234 aa16.18■□□□□ 0.18
SMAD3-205ENST00000558428 INTS5Q6P9B9 1019 aaKnown RBP16.18■□□□□ 0.18
SMAD3-205ENST00000558428 CCDC87Q9NVE4 849 aa16.18■□□□□ 0.18
SMAD3-205ENST00000558428 CCER2I3L3R5 266 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms