RNA–Protein interactions for RNA: ENST00000558138.1

SPG11-207, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 750 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-207ENST00000558138 LRRC4BQ9NT99 713 aa11.89□□□□□ -0.51
SPG11-207ENST00000558138 ASAP1Q9ULH1 1129 aa11.89□□□□□ -0.51
SPG11-207ENST00000558138 LY75O60449 1722 aa11.89□□□□□ -0.51
SPG11-207ENST00000558138 SCN11AQ9UI33 1791 aa11.88□□□□□ -0.51
SPG11-207ENST00000558138 LOC102724428A0A0B4J2F2 783 aa11.88□□□□□ -0.51
SPG11-207ENST00000558138 SIK1P57059 783 aa11.88□□□□□ -0.51
SPG11-207ENST00000558138 TTC5Q8N0Z6 440 aa11.88□□□□□ -0.51
SPG11-207ENST00000558138 SLC52A2Q9HAB3 445 aa11.88□□□□□ -0.51
SPG11-207ENST00000558138 PTCD1O75127 700 aaKnown RBP11.87□□□□□ -0.51
SPG11-207ENST00000558138 CCDC146Q8IYE0 955 aa11.87□□□□□ -0.51
SPG11-207ENST00000558138 ATG3Q9NT62 314 aa11.87□□□□□ -0.51
SPG11-207ENST00000558138 VIRMAQ69YN4 1812 aaKnown RBP11.87□□□□□ -0.51
SPG11-207ENST00000558138 ZNF827Q17R98 1081 aa11.86□□□□□ -0.51
SPG11-207ENST00000558138 PPP1R1BQ9UD71 204 aaPredicted RBP11.86□□□□□ -0.51
SPG11-207ENST00000558138 C5P01031 1676 aa11.86□□□□□ -0.51
SPG11-207ENST00000558138 PHF14O94880 888 aa11.85□□□□□ -0.51
SPG11-207ENST00000558138 ZBTB7AO95365 584 aa11.85□□□□□ -0.51
SPG11-207ENST00000558138 SLC39A6Q13433 755 aa11.85□□□□□ -0.51
SPG11-207ENST00000558138 MCM10Q7L590 875 aa11.85□□□□□ -0.51
SPG11-207ENST00000558138 MRS2Q9HD23 443 aa11.85□□□□□ -0.51
SPG11-207ENST00000558138 NEUROD2Q15784 382 aa11.84□□□□□ -0.51
SPG11-207ENST00000558138 NFE2L2Q16236 605 aa11.84□□□□□ -0.51
SPG11-207ENST00000558138 PAPPAQ13219 1627 aa11.84□□□□□ -0.51
SPG11-207ENST00000558138 BTBD11A6QL63 1104 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 GNPATO15228 680 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 LMOD3Q0VAK6 560 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 DCTN1Q14203 1278 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 LINC00116Q8NCU8 138 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 IL17REQ8NFR9 667 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 AKT1S1Q96B36 256 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 SPON1Q9HCB6 807 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 C4BP0C0L5 1744 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 MRC1P22897 1456 aa11.83□□□□□ -0.52
SPG11-207ENST00000558138 HTATSF1O43719 755 aaKnown RBP11.82□□□□□ -0.52
SPG11-207ENST00000558138 RIPK4P57078 832 aa11.82□□□□□ -0.52
SPG11-207ENST00000558138 RUNDC1Q96C34 613 aa11.82□□□□□ -0.52
SPG11-207ENST00000558138 PLEKHF1Q96S99 279 aa11.82□□□□□ -0.52
SPG11-207ENST00000558138 ADAMTS8Q9UP79 889 aa11.82□□□□□ -0.52
SPG11-207ENST00000558138 ATF5Q9Y2D1 282 aaPredicted RBP11.82□□□□□ -0.52
SPG11-207ENST00000558138 RRP7AQ9Y3A4 280 aaKnown RBP11.82□□□□□ -0.52
SPG11-207ENST00000558138 TAF1LQ8IZX4 1826 aa11.81□□□□□ -0.52
SPG11-207ENST00000558138 ITPK1Q13572 414 aa11.81□□□□□ -0.52
SPG11-207ENST00000558138 FLAD1Q8NFF5 587 aa11.81□□□□□ -0.52
SPG11-207ENST00000558138 PDGFDQ9GZP0 370 aaPredicted RBP11.81□□□□□ -0.52
SPG11-207ENST00000558138 PNPLA7Q6ZV29 1317 aa11.81□□□□□ -0.52
SPG11-207ENST00000558138 POLD1P28340 1107 aa11.8□□□□□ -0.52
SPG11-207ENST00000558138 NPM2Q86SE8 214 aaKnown RBP11.8□□□□□ -0.52
SPG11-207ENST00000558138 KLHL34Q8N239 644 aa11.8□□□□□ -0.52
SPG11-207ENST00000558138 MTFR1LQ9H019 292 aa11.8□□□□□ -0.52
SPG11-207ENST00000558138 RTCBQ9Y3I0 505 aaKnown RBP11.8□□□□□ -0.52
SPG11-207ENST00000558138 DLG5Q8TDM6 1919 aa11.8□□□□□ -0.52
SPG11-207ENST00000558138 TUBGCP6Q96RT7 1819 aa11.79□□□□□ -0.52
SPG11-207ENST00000558138 ADAMTS7Q9UKP4 1686 aa11.79□□□□□ -0.52
SPG11-207ENST00000558138 TMPOP42166 694 aaKnown RBP11.79□□□□□ -0.52
SPG11-207ENST00000558138 ZNF790Q6PG37 636 aa11.79□□□□□ -0.52
SPG11-207ENST00000558138 DNAJC10Q8IXB1 793 aa11.79□□□□□ -0.52
SPG11-207ENST00000558138 FMNL2Q96PY5 1086 aa11.79□□□□□ -0.52
SPG11-207ENST00000558138 THUMPD2Q9BTF0 503 aaKnown RBP11.79□□□□□ -0.52
SPG11-207ENST00000558138 CASZ1Q86V15 1759 aa11.79□□□□□ -0.52
SPG11-207ENST00000558138 CEMIPQ8WUJ3 1361 aa11.79□□□□□ -0.52
SPG11-207ENST00000558138 LRP5O75197 1615 aa11.78□□□□□ -0.52
SPG11-207ENST00000558138 QSER1Q2KHR3 1735 aa11.78□□□□□ -0.52
SPG11-207ENST00000558138 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.78□□□□□ -0.52
SPG11-207ENST00000558138 CRKLP46109 303 aaKnown RBP11.78□□□□□ -0.52
SPG11-207ENST00000558138 TAF7Q15545 349 aaPredicted RBP11.78□□□□□ -0.52
SPG11-207ENST00000558138 MSL1Q68DK7 614 aa11.78□□□□□ -0.52
SPG11-207ENST00000558138 COL23A1Q86Y22 540 aaPredicted RBP11.78□□□□□ -0.52
SPG11-207ENST00000558138 PNISRQ8TF01 805 aaKnown RBP11.78□□□□□ -0.52
SPG11-207ENST00000558138 ZNF330Q9Y3S2 320 aaPredicted RBP11.78□□□□□ -0.52
SPG11-207ENST00000558138 LAS1LQ9Y4W2 734 aaKnown RBP11.78□□□□□ -0.52
SPG11-207ENST00000558138 CNTNAP4Q9C0A0 1308 aa11.78□□□□□ -0.52
SPG11-207ENST00000558138 STARD3NLO95772 234 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 SSFA2P28290 1259 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 RFC4P35249 363 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 CCDC184Q52MB2 194 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 TRAPPC3LQ5T215 181 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 SMIM5Q71RC9 77 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 FAM9BQ8IZU0 186 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 SLC16A10Q8TF71 515 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 SLC4A9Q96Q91 983 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 ARXQ96QS3 562 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 MIS18AQ9NYP9 233 aa11.77□□□□□ -0.53
SPG11-207ENST00000558138 SIPA1L3O60292 1781 aaPredicted RBP11.77□□□□□ -0.53
SPG11-207ENST00000558138 KCPQ6ZWJ8 1503 aa11.76□□□□□ -0.53
SPG11-207ENST00000558138 CANXP27824 592 aaKnown RBP11.76□□□□□ -0.53
SPG11-207ENST00000558138 VSIG10Q8N0Z9 540 aa11.76□□□□□ -0.53
SPG11-207ENST00000558138 ZNF496Q96IT1 587 aaPredicted RBP11.76□□□□□ -0.53
SPG11-207ENST00000558138 TEX13AQ9BXU3 409 aaPredicted RBP11.76□□□□□ -0.53
SPG11-207ENST00000558138 CCDC87Q9NVE4 849 aa11.76□□□□□ -0.53
SPG11-207ENST00000558138 TSPYL4Q9UJ04 414 aa11.76□□□□□ -0.53
SPG11-207ENST00000558138 TJP1Q07157 1748 aa11.76□□□□□ -0.53
SPG11-207ENST00000558138 HEG1Q9ULI3 1381 aa11.76□□□□□ -0.53
SPG11-207ENST00000558138 ZNF831Q5JPB2 1677 aa11.75□□□□□ -0.53
SPG11-207ENST00000558138 COL5A3P25940 1745 aaPredicted RBP11.75□□□□□ -0.53
SPG11-207ENST00000558138 UBR3Q6ZT12 1888 aa11.75□□□□□ -0.53
SPG11-207ENST00000558138 SENP3-EIF4A1A0A087X0R7 540 aa11.75□□□□□ -0.53
SPG11-207ENST00000558138 APAF1O14727 1248 aa11.75□□□□□ -0.53
SPG11-207ENST00000558138 KCNQ3O43525 872 aa11.75□□□□□ -0.53
SPG11-207ENST00000558138 RC3H1Q5TC82 1133 aaKnown RBP11.75□□□□□ -0.53
SPG11-207ENST00000558138 UBR2Q8IWV8 1755 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms