RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 CCDC125Q86Z20 511 aa27.86■■■□□ 2.05
CASC4-204ENST00000557945 CCDC27Q2M243 656 aa27.85■■■□□ 2.05
CASC4-204ENST00000557945 NCBP3Q53F19 620 aaKnown RBP27.84■■■□□ 2.05
CASC4-204ENST00000557945 NGEFQ8N5V2 710 aa27.84■■■□□ 2.05
CASC4-204ENST00000557945 BTAF1O14981 1849 aa27.83■■■□□ 2.05
CASC4-204ENST00000557945 TAF7Q15545 349 aaPredicted RBP27.83■■■□□ 2.05
CASC4-204ENST00000557945 WWC1Q8IX03 1113 aa27.83■■■□□ 2.05
CASC4-204ENST00000557945 ASAP1Q9ULH1 1129 aa27.83■■■□□ 2.05
CASC4-204ENST00000557945 BTBD11A6QL63 1104 aa27.82■■■□□ 2.04
CASC4-204ENST00000557945 TNS1Q9HBL0 1735 aaKnown RBP27.81■■■□□ 2.04
CASC4-204ENST00000557945 CALD1Q05682 793 aaKnown RBP27.81■■■□□ 2.04
CASC4-204ENST00000557945 ATG3Q9NT62 314 aa27.81■■■□□ 2.04
CASC4-204ENST00000557945 LAS1LQ9Y4W2 734 aaKnown RBP27.81■■■□□ 2.04
CASC4-204ENST00000557945 BAG6P46379 1132 aa27.8■■■□□ 2.04
CASC4-204ENST00000557945 HNRNPUQ00839 825 aaKnown RBP eCLIP27.8■■■□□ 2.04
CASC4-204ENST00000557945 SLC39A6Q13433 755 aa27.8■■■□□ 2.04
CASC4-204ENST00000557945 SMARCC1Q92922 1105 aaPredicted RBP27.8■■■□□ 2.04
CASC4-204ENST00000557945 MIS18AQ9NYP9 233 aa27.79■■■□□ 2.04
CASC4-204ENST00000557945 PALLDQ8WX93 1383 aa27.78■■■□□ 2.04
CASC4-204ENST00000557945 DEFB132Q7Z7B7 95 aa27.78■■■□□ 2.04
CASC4-204ENST00000557945 TTC5Q8N0Z6 440 aa27.77■■■□□ 2.04
CASC4-204ENST00000557945 PLSCR1O15162 318 aa27.76■■■□□ 2.03
CASC4-204ENST00000557945 EN1Q05925 392 aaPredicted RBP27.76■■■□□ 2.03
CASC4-204ENST00000557945 SIPA1L3O60292 1781 aaPredicted RBP27.76■■■□□ 2.03
CASC4-204ENST00000557945 TSPYL4Q9UJ04 414 aa27.75■■■□□ 2.03
CASC4-204ENST00000557945 PTCD1O75127 700 aaKnown RBP27.74■■■□□ 2.03
CASC4-204ENST00000557945 ZNF790Q6PG37 636 aa27.74■■■□□ 2.03
CASC4-204ENST00000557945 RBM42Q9BTD8 480 aaKnown RBP27.74■■■□□ 2.03
CASC4-204ENST00000557945 KCNQ3O43525 872 aa27.73■■■□□ 2.03
CASC4-204ENST00000557945 WDR63Q8IWG1 891 aa27.73■■■□□ 2.03
CASC4-204ENST00000557945 GNAI1P63096 354 aa27.72■■■□□ 2.03
CASC4-204ENST00000557945 CFAP44Q96MT7 982 aa27.72■■■□□ 2.03
CASC4-204ENST00000557945 IFT57Q9NWB7 429 aa27.72■■■□□ 2.03
CASC4-204ENST00000557945 BABAM1Q9NWV8 329 aa27.72■■■□□ 2.03
CASC4-204ENST00000557945 CHL1O00533 1208 aa27.71■■■□□ 2.03
CASC4-204ENST00000557945 EZH2Q15910 746 aaKnown RBP27.71■■■□□ 2.03
CASC4-204ENST00000557945 CAMKK2Q96RR4 588 aa27.71■■■□□ 2.03
CASC4-204ENST00000557945 LOC102724428A0A0B4J2F2 783 aa27.7■■■□□ 2.02
CASC4-204ENST00000557945 SIK1P57059 783 aa27.7■■■□□ 2.02
CASC4-204ENST00000557945 TXNRD1Q16881 649 aa27.7■■■□□ 2.02
CASC4-204ENST00000557945 CCNL1Q9UK58 526 aaPredicted RBP27.7■■■□□ 2.02
CASC4-204ENST00000557945 IL16Q14005 1332 aa27.7■■■□□ 2.02
CASC4-204ENST00000557945 ZNF521Q96K83 1311 aa27.7■■■□□ 2.02
CASC4-204ENST00000557945 SOCS7O14512 581 aa27.69■■■□□ 2.02
CASC4-204ENST00000557945 PAPPAQ13219 1627 aa27.68■■■□□ 2.02
CASC4-204ENST00000557945 ZNF853P0CG23 659 aa27.68■■■□□ 2.02
CASC4-204ENST00000557945 KCNQ4P56696 695 aa27.68■■■□□ 2.02
CASC4-204ENST00000557945 ZNF496Q96IT1 587 aaPredicted RBP27.68■■■□□ 2.02
CASC4-204ENST00000557945 FMNL2Q96PY5 1086 aa27.68■■■□□ 2.02
CASC4-204ENST00000557945 PROM2Q8N271 834 aa27.67■■■□□ 2.02
CASC4-204ENST00000557945 MBIPQ9NS73 344 aa27.67■■■□□ 2.02
CASC4-204ENST00000557945 ATP6V1AP38606 617 aa27.66■■■□□ 2.02
CASC4-204ENST00000557945 GOLGA2Q08379 1002 aa27.66■■■□□ 2.02
CASC4-204ENST00000557945 SLC27A3Q5K4L6 730 aa27.66■■■□□ 2.02
CASC4-204ENST00000557945 KCPQ6ZWJ8 1503 aa27.65■■■□□ 2.02
CASC4-204ENST00000557945 EIF4A1P60842 406 aaKnown RBP27.64■■■□□ 2.02
CASC4-204ENST00000557945 TSR2Q969E8 191 aaKnown RBP27.64■■■□□ 2.02
CASC4-204ENST00000557945 YTHDC1Q96MU7 727 aaKnown RBP27.64■■■□□ 2.02
CASC4-204ENST00000557945 SLC4A9Q96Q91 983 aa27.64■■■□□ 2.02
CASC4-204ENST00000557945 KDM3BQ7LBC6 1761 aa27.64■■■□□ 2.02
CASC4-204ENST00000557945 LY75O60449 1722 aa27.64■■■□□ 2.02
CASC4-204ENST00000557945 RGPD3A6NKT7 1758 aaPredicted RBP27.64■■■□□ 2.01
CASC4-204ENST00000557945 RGPD4Q7Z3J3 1758 aa27.64■■■□□ 2.01
CASC4-204ENST00000557945 SPINK5Q9NQ38 1064 aaPredicted RBP27.63■■■□□ 2.01
CASC4-204ENST00000557945 LRRC4BQ9NT99 713 aa27.63■■■□□ 2.01
CASC4-204ENST00000557945 HEG1Q9ULI3 1381 aa27.62■■■□□ 2.01
CASC4-204ENST00000557945 UBR2Q8IWV8 1755 aa27.62■■■□□ 2.01
CASC4-204ENST00000557945 MYH16Q9H6N6 1097 aa27.61■■■□□ 2.01
CASC4-204ENST00000557945 ZBED9Q6R2W3 1325 aa27.61■■■□□ 2.01
CASC4-204ENST00000557945 ITPK1Q13572 414 aa27.6■■■□□ 2.01
CASC4-204ENST00000557945 VSIG10Q8N0Z9 540 aa27.6■■■□□ 2.01
CASC4-204ENST00000557945 SNRPA1P09661 255 aaKnown RBP27.6■■■□□ 2.01
CASC4-204ENST00000557945 DNAJC10Q8IXB1 793 aa27.6■■■□□ 2.01
CASC4-204ENST00000557945 CDCA7LQ96GN5 454 aa27.6■■■□□ 2.01
CASC4-204ENST00000557945 FANCIQ9NVI1 1328 aa27.59■■■□□ 2.01
CASC4-204ENST00000557945 E9PSI1 815 aa27.59■■■□□ 2.01
CASC4-204ENST00000557945 KRT24Q2M2I5 525 aa27.58■■■□□ 2.01
CASC4-204ENST00000557945 SLFN5Q08AF3 891 aa27.57■■■□□ 2
CASC4-204ENST00000557945 LINC00116Q8NCU8 138 aa27.57■■■□□ 2
CASC4-204ENST00000557945 PRAMEF22A3QJZ6 481 aa27.56■■■□□ 2
CASC4-204ENST00000557945 GIGYF1O75420 1035 aaPredicted RBP27.56■■■□□ 2
CASC4-204ENST00000557945 TEX13AQ9BXU3 409 aaPredicted RBP27.56■■■□□ 2
CASC4-204ENST00000557945 HMGB2P26583 209 aaKnown RBP27.55■■■□□ 2
CASC4-204ENST00000557945 RREB1Q92766 1687 aa27.54■■■□□ 2
CASC4-204ENST00000557945 STARD3NLO95772 234 aa27.54■■■□□ 2
CASC4-204ENST00000557945 ZNF831Q5JPB2 1677 aa27.53■■■□□ 2
CASC4-204ENST00000557945 ELL2O00472 640 aaPredicted RBP27.53■■■□□ 2
CASC4-204ENST00000557945 USP16Q9Y5T5 823 aa27.53■■■□□ 2
CASC4-204ENST00000557945 TJP1Q07157 1748 aa27.52■■■□□ 2
CASC4-204ENST00000557945 DUSP27Q5VZP5 1158 aa27.52■■■□□ 2
CASC4-204ENST00000557945 C8orf58Q8NAV2 365 aa27.52■■■□□ 2
CASC4-204ENST00000557945 C5P01031 1676 aa27.51■■□□□ 1.99
CASC4-204ENST00000557945 CYP19A1P11511 503 aaPredicted RBP27.51■■□□□ 1.99
CASC4-204ENST00000557945 EXOSC9Q06265 439 aaKnown RBP27.51■■□□□ 1.99
CASC4-204ENST00000557945 NBPF14Q5TI25 921 aa27.51■■□□□ 1.99
CASC4-204ENST00000557945 NUP188Q5SRE5 1749 aa27.51■■□□□ 1.99
CASC4-204ENST00000557945 AK7Q96M32 723 aa27.5■■□□□ 1.99
CASC4-204ENST00000557945 EIF2S2P20042 333 aaKnown RBP27.49■■□□□ 1.99
CASC4-204ENST00000557945 CRKLP46109 303 aaKnown RBP27.49■■□□□ 1.99
CASC4-204ENST00000557945 STK32BQ9NY57 414 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms