RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 ZNF853P0CG23 659 aa13.06□□□□□ -0.32
NEK9-205ENST00000555405 HDGFL1Q5TGJ6 251 aa13.06□□□□□ -0.32
NEK9-205ENST00000555405 SLC4A10Q6U841 1118 aa13.06□□□□□ -0.32
NEK9-205ENST00000555405 AIMP1Q12904 312 aaKnown RBP13.06□□□□□ -0.32
NEK9-205ENST00000555405 STK31Q9BXU1 1019 aa13.06□□□□□ -0.32
NEK9-205ENST00000555405 SLC52A2Q9HAB3 445 aa13.06□□□□□ -0.32
NEK9-205ENST00000555405 SPATA31A5Q5VU36 1347 aa13.05□□□□□ -0.32
NEK9-205ENST00000555405 SPATA31A7Q8IWB4 1347 aa13.05□□□□□ -0.32
NEK9-205ENST00000555405 MYL6BP14649 208 aa13.04□□□□□ -0.32
NEK9-205ENST00000555405 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.04□□□□□ -0.323e-8■■□□□ 12.7
NEK9-205ENST00000555405 GJD4Q96KN9 370 aaPredicted RBP13.04□□□□□ -0.32
NEK9-205ENST00000555405 ZNF496Q96IT1 587 aaPredicted RBP13.04□□□□□ -0.32
NEK9-205ENST00000555405 TRPC5Q9UL62 973 aaPredicted RBP13.04□□□□□ -0.32
NEK9-205ENST00000555405 ASAP1Q9ULH1 1129 aa13.04□□□□□ -0.32
NEK9-205ENST00000555405 KCNQ2O43526 872 aa13.03□□□□□ -0.32
NEK9-205ENST00000555405 ZNF790Q6PG37 636 aa13.03□□□□□ -0.32
NEK9-205ENST00000555405 FNBP4Q8N3X1 1017 aaPredicted RBP13.03□□□□□ -0.32
NEK9-205ENST00000555405 LRP6O75581 1613 aa13.03□□□□□ -0.32
NEK9-205ENST00000555405 KCNQ4P56696 695 aa13.03□□□□□ -0.32
NEK9-205ENST00000555405 VPS72Q15906 364 aa13.03□□□□□ -0.32
NEK9-205ENST00000555405 ITPRIPQ8IWB1 547 aa13.03□□□□□ -0.32
NEK9-205ENST00000555405 MARCH10Q8NA82 808 aaPredicted RBP13.03□□□□□ -0.32
NEK9-205ENST00000555405 EIF4A1P60842 406 aaKnown RBP13.02□□□□□ -0.32
NEK9-205ENST00000555405 ZKSCAN2Q63HK3 967 aa13.02□□□□□ -0.32
NEK9-205ENST00000555405 SEPT12Q8IYM1 358 aa13.02□□□□□ -0.32
NEK9-205ENST00000555405 F6X3S4 739 aa13.02□□□□□ -0.33
NEK9-205ENST00000555405 G2E3Q7L622 706 aa13.02□□□□□ -0.33
NEK9-205ENST00000555405 FBXO41Q8TF61 875 aa13.02□□□□□ -0.33
NEK9-205ENST00000555405 CCDC136Q96JN2 1154 aa13.02□□□□□ -0.33
NEK9-205ENST00000555405 FKBP5Q13451 457 aaPredicted RBP13.01□□□□□ -0.33
NEK9-205ENST00000555405 PIGBQ92521 554 aa13.01□□□□□ -0.33
NEK9-205ENST00000555405 USP16Q9Y5T5 823 aa13.01□□□□□ -0.33
NEK9-205ENST00000555405 COL18A1P39060 1754 aa13.01□□□□□ -0.33
NEK9-205ENST00000555405 RLBP1P12271 317 aa13□□□□□ -0.33
NEK9-205ENST00000555405 NCBP3Q53F19 620 aaKnown RBP13□□□□□ -0.33
NEK9-205ENST00000555405 OVOS2A0A0G2JMS6 1433 aa13□□□□□ -0.33
NEK9-205ENST00000555405 IPO8O15397 1037 aaKnown RBP13□□□□□ -0.33
NEK9-205ENST00000555405 CCDC30Q5VVM6 783 aa13□□□□□ -0.33
NEK9-205ENST00000555405 PHAXQ9H814 394 aaKnown RBP13□□□□□ -0.33
NEK9-205ENST00000555405 CHPF2Q9P2E5 772 aa13□□□□□ -0.33
NEK9-205ENST00000555405 DLG5Q8TDM6 1919 aa13□□□□□ -0.33
NEK9-205ENST00000555405 PTF1AQ7RTS3 328 aa12.99□□□□□ -0.33
NEK9-205ENST00000555405 DZIP1LQ8IYY4 767 aaKnown RBP12.99□□□□□ -0.33
NEK9-205ENST00000555405 THRAP3Q9Y2W1 955 aaKnown RBP12.99□□□□□ -0.33
NEK9-205ENST00000555405 BCL9LQ86UU0 1499 aa12.99□□□□□ -0.33
NEK9-205ENST00000555405 RGPD1P0DJD0 1748 aa12.99□□□□□ -0.33
NEK9-205ENST00000555405 USP54Q70EL1 1684 aa12.99□□□□□ -0.33
NEK9-205ENST00000555405 FMNL2Q96PY5 1086 aa12.99□□□□□ -0.33
NEK9-205ENST00000555405 CDCA7Q9BWT1 371 aaPredicted RBP12.99□□□□□ -0.33
NEK9-205ENST00000555405 TRIM27P14373 513 aa12.98□□□□□ -0.33
NEK9-205ENST00000555405 MRPL50Q8N5N7 158 aaKnown RBP12.98□□□□□ -0.33
NEK9-205ENST00000555405 KDM6AO15550 1401 aaPredicted RBP12.98□□□□□ -0.33
NEK9-205ENST00000555405 NPM2Q86SE8 214 aaKnown RBP12.98□□□□□ -0.33
NEK9-205ENST00000555405 ATF7IPQ6VMQ6 1270 aa12.98□□□□□ -0.33
NEK9-205ENST00000555405 ERVV-2B6SEH9 535 aa12.97□□□□□ -0.33
NEK9-205ENST00000555405 GIGYF1O75420 1035 aaPredicted RBP12.97□□□□□ -0.33
NEK9-205ENST00000555405 A1BGP04217 495 aa12.97□□□□□ -0.33
NEK9-205ENST00000555405 CEMIPQ8WUJ3 1361 aa12.97□□□□□ -0.33
NEK9-205ENST00000555405 PROSER3Q2NL68 480 aa12.97□□□□□ -0.33
NEK9-205ENST00000555405 SLIT2O94813 1529 aa12.97□□□□□ -0.33
NEK9-205ENST00000555405 TMEM57Q8N5G2 664 aa12.97□□□□□ -0.33
NEK9-205ENST00000555405 SNRPA1P09661 255 aaKnown RBP12.96□□□□□ -0.34
NEK9-205ENST00000555405 CT47B1P0C2W7 299 aaPredicted RBP12.96□□□□□ -0.34
NEK9-205ENST00000555405 BARGINQ6ZT62 677 aa12.96□□□□□ -0.34
NEK9-205ENST00000555405 DNAJC10Q8IXB1 793 aa12.96□□□□□ -0.34
NEK9-205ENST00000555405 C1orf115Q9H7X2 142 aa12.96□□□□□ -0.34
NEK9-205ENST00000555405 COL14A1Q05707 1796 aaKnown RBP12.96□□□□□ -0.34
NEK9-205ENST00000555405 ABCA3Q99758 1704 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 CRYBG1Q9Y4K1 1723 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 KIF16BQ96L93 1317 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 PPP4R2Q9NY27 417 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 FLIIQ13045 1269 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 ALDH1L2Q3SY69 923 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 ZNF772Q68DY9 489 aaPredicted RBP12.95□□□□□ -0.34
NEK9-205ENST00000555405 ATG3Q9NT62 314 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 LMO7Q8WWI1 1683 aa12.95□□□□□ -0.34
NEK9-205ENST00000555405 RXRBP28702 533 aa12.94□□□□□ -0.34
NEK9-205ENST00000555405 RTL5Q5HYW3 569 aaPredicted RBP12.94□□□□□ -0.34
NEK9-205ENST00000555405 TRIM37O94972 964 aa12.94□□□□□ -0.34
NEK9-205ENST00000555405 ATP6V1AP38606 617 aa12.94□□□□□ -0.34
NEK9-205ENST00000555405 SMIM5Q71RC9 77 aa12.94□□□□□ -0.34
NEK9-205ENST00000555405 PI4KAP2A4QPH2 592 aa12.93□□□□□ -0.34
NEK9-205ENST00000555405 NKX1-1Q15270 411 aaPredicted RBP12.93□□□□□ -0.34
NEK9-205ENST00000555405 KRT27Q7Z3Y8 459 aa12.93□□□□□ -0.34
NEK9-205ENST00000555405 RIC3Q7Z5B4 369 aa12.93□□□□□ -0.34
NEK9-205ENST00000555405 PI4KAP1Q8N8J0 262 aa12.93□□□□□ -0.34
NEK9-205ENST00000555405 NCAPD2Q15021 1401 aa12.93□□□□□ -0.34
NEK9-205ENST00000555405 COPS6Q7L5N1 327 aa12.92□□□□□ -0.34
NEK9-205ENST00000555405 JARID2Q92833 1246 aaPredicted RBP12.92□□□□□ -0.34
NEK9-205ENST00000555405 API5Q9BZZ5 524 aaKnown RBP12.92□□□□□ -0.34
NEK9-205ENST00000555405 POTEAQ6S8J7 498 aa12.92□□□□□ -0.34
NEK9-205ENST00000555405 XAGE3Q8WTP9 111 aa12.92□□□□□ -0.34
NEK9-205ENST00000555405 DBF4Q9UBU7 674 aaPredicted RBP12.92□□□□□ -0.34
NEK9-205ENST00000555405 RBM6P78332 1123 aaKnown RBP12.92□□□□□ -0.34
NEK9-205ENST00000555405 ZBTB3Q9H5J0 574 aa12.91□□□□□ -0.34
NEK9-205ENST00000555405 RNF123Q5XPI4 1314 aa12.91□□□□□ -0.34
NEK9-205ENST00000555405 COL22A1Q8NFW1 1626 aaPredicted RBP12.91□□□□□ -0.34
NEK9-205ENST00000555405 BABAM1Q9NWV8 329 aa12.91□□□□□ -0.34
NEK9-205ENST00000555405 FAM177BA6PVY3 158 aa12.9□□□□□ -0.34
NEK9-205ENST00000555405 MS4A1P11836 297 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms