RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 U2AF1L5P0DN76 240 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-213ENST00000554600 ATP6V1AP38606 617 aa14.27□□□□□ -0.13
SHMT2-213ENST00000554600 SIK1P57059 783 aa14.27□□□□□ -0.13
SHMT2-213ENST00000554600 U2AF1Q01081 240 aaKnown RBP eCLIP14.27□□□□□ -0.13
SHMT2-213ENST00000554600 MTHFSDQ2M296 383 aaKnown RBP14.27□□□□□ -0.13
SHMT2-213ENST00000554600 AK7Q96M32 723 aa14.27□□□□□ -0.13
SHMT2-213ENST00000554600 ATG3Q9NT62 314 aa14.27□□□□□ -0.13
SHMT2-213ENST00000554600 DLG5Q8TDM6 1919 aa14.27□□□□□ -0.13
SHMT2-213ENST00000554600 COL5A3P25940 1745 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-213ENST00000554600 NFATC2IPQ8NCF5 419 aa14.26□□□□□ -0.13
SHMT2-213ENST00000554600 MYH14Q7Z406 1995 aaKnown RBP14.25□□□□□ -0.13
SHMT2-213ENST00000554600 PRKAR2BP31323 418 aa14.25□□□□□ -0.13
SHMT2-213ENST00000554600 LGR6Q9HBX8 967 aa14.25□□□□□ -0.13
SHMT2-213ENST00000554600 ZNF831Q5JPB2 1677 aa14.25□□□□□ -0.13
SHMT2-213ENST00000554600 RNMTO43148 476 aaKnown RBP14.24□□□□□ -0.13
SHMT2-213ENST00000554600 PTCD1O75127 700 aaKnown RBP14.24□□□□□ -0.13
SHMT2-213ENST00000554600 PHF14O94880 888 aa14.24□□□□□ -0.13
SHMT2-213ENST00000554600 IFFO2Q5TF58 517 aa14.24□□□□□ -0.13
SHMT2-213ENST00000554600 GAS2L2Q8NHY3 880 aa14.24□□□□□ -0.13
SHMT2-213ENST00000554600 SLC16A10Q8TF71 515 aa14.24□□□□□ -0.13
SHMT2-213ENST00000554600 ADAMTS7Q9UKP4 1686 aa14.23□□□□□ -0.13
SHMT2-213ENST00000554600 PTGER2P43116 358 aa14.23□□□□□ -0.13
SHMT2-213ENST00000554600 ITPK1Q13572 414 aa14.23□□□□□ -0.13
SHMT2-213ENST00000554600 COL23A1Q86Y22 540 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-213ENST00000554600 LINC00116Q8NCU8 138 aa14.23□□□□□ -0.13
SHMT2-213ENST00000554600 SLC52A2Q9HAB3 445 aa14.23□□□□□ -0.13
SHMT2-213ENST00000554600 SIPA1L3O60292 1781 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-213ENST00000554600 COL24A1Q17RW2 1714 aa14.23□□□□□ -0.13
SHMT2-213ENST00000554600 MAP3K5Q99683 1374 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 TJP1Q07157 1748 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 GNAT3A8MTJ3 354 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 POLD1P28340 1107 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 RALBP1Q15311 655 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 KLHL34Q8N239 644 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 FLAD1Q8NFF5 587 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 RSPH6AQ9H0K4 717 aa14.22□□□□□ -0.13
SHMT2-213ENST00000554600 MRC1P22897 1456 aa14.21□□□□□ -0.13
SHMT2-213ENST00000554600 GNPATO15228 680 aa14.21□□□□□ -0.13
SHMT2-213ENST00000554600 NEFMP07197 916 aa14.21□□□□□ -0.13
SHMT2-213ENST00000554600 MSL1Q68DK7 614 aa14.21□□□□□ -0.13
SHMT2-213ENST00000554600 PHACTR3Q96KR7 559 aa14.21□□□□□ -0.13
SHMT2-213ENST00000554600 UBR2Q8IWV8 1755 aa14.2□□□□□ -0.14
SHMT2-213ENST00000554600 FCHSD2O94868 740 aa14.2□□□□□ -0.14
SHMT2-213ENST00000554600 TEFQ10587 303 aa14.2□□□□□ -0.14
SHMT2-213ENST00000554600 SMIM5Q71RC9 77 aa14.2□□□□□ -0.14
SHMT2-213ENST00000554600 ARXQ96QS3 562 aa14.2□□□□□ -0.14
SHMT2-213ENST00000554600 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.19□□□□□ -0.14
SHMT2-213ENST00000554600 DCAF8L1A6NGE4 600 aa14.19□□□□□ -0.14
SHMT2-213ENST00000554600 SLC39A6Q13433 755 aa14.19□□□□□ -0.14
SHMT2-213ENST00000554600 SLC4A9Q96Q91 983 aa14.19□□□□□ -0.14
SHMT2-213ENST00000554600 C4AP0C0L4 1744 aa14.18□□□□□ -0.14
SHMT2-213ENST00000554600 SSFA2P28290 1259 aa14.18□□□□□ -0.14
SHMT2-213ENST00000554600 SGIP1Q9BQI5 828 aa14.18□□□□□ -0.14
SHMT2-213ENST00000554600 FHDC1Q9C0D6 1143 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-213ENST00000554600 CICQ96RK0 1608 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-213ENST00000554600 AMIGO3Q86WK7 504 aa14.17□□□□□ -0.14
SHMT2-213ENST00000554600 TTC5Q8N0Z6 440 aa14.17□□□□□ -0.14
SHMT2-213ENST00000554600 RTF1Q92541 710 aaKnown RBP14.17□□□□□ -0.14
SHMT2-213ENST00000554600 RTCBQ9Y3I0 505 aaKnown RBP14.17□□□□□ -0.14
SHMT2-213ENST00000554600 MYBBP1AQ9BQG0 1328 aaKnown RBP14.16□□□□□ -0.14
SHMT2-213ENST00000554600 IL17REQ8NFR9 667 aa14.16□□□□□ -0.14
SHMT2-213ENST00000554600 UTRNP46939 3433 aa14.16□□□□□ -0.14
SHMT2-213ENST00000554600 TRAPPC3LQ5T215 181 aa14.15□□□□□ -0.14
SHMT2-213ENST00000554600 RC3H1Q5TC82 1133 aaKnown RBP14.15□□□□□ -0.14
SHMT2-213ENST00000554600 DNAJC10Q8IXB1 793 aa14.15□□□□□ -0.14
SHMT2-213ENST00000554600 SYT17Q9BSW7 474 aa14.15□□□□□ -0.14
SHMT2-213ENST00000554600 KCPQ6ZWJ8 1503 aa14.15□□□□□ -0.14
SHMT2-213ENST00000554600 CNTNAP4Q9C0A0 1308 aa14.15□□□□□ -0.15
SHMT2-213ENST00000554600 MAPK8IP3Q9UPT6 1336 aa14.15□□□□□ -0.15
SHMT2-213ENST00000554600 CHD4Q14839 1912 aa14.14□□□□□ -0.15
SHMT2-213ENST00000554600 CRKLP46109 303 aaKnown RBP14.14□□□□□ -0.15
SHMT2-213ENST00000554600 MCM10Q7L590 875 aa14.14□□□□□ -0.15
SHMT2-213ENST00000554600 PNNQ9H307 717 aaKnown RBP14.14□□□□□ -0.15
SHMT2-213ENST00000554600 RPS6KA4O75676 772 aa14.13□□□□□ -0.15
SHMT2-213ENST00000554600 ZNF316A6NFI3 1004 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-213ENST00000554600 BTBD11A6QL63 1104 aa14.12□□□□□ -0.15
SHMT2-213ENST00000554600 RFC4P35249 363 aa14.12□□□□□ -0.15
SHMT2-213ENST00000554600 DCTN1Q14203 1278 aa14.12□□□□□ -0.15
SHMT2-213ENST00000554600 CEMIPQ8WUJ3 1361 aa14.11□□□□□ -0.15
SHMT2-213ENST00000554600 ADRA2BP18089 450 aa14.11□□□□□ -0.15
SHMT2-213ENST00000554600 WDR43Q15061 677 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHMT2-213ENST00000554600 ZNF790Q6PG37 636 aa14.11□□□□□ -0.15
SHMT2-213ENST00000554600 PELP1Q8IZL8 1130 aaKnown RBP14.11□□□□□ -0.15
SHMT2-213ENST00000554600 ARHGEF1Q92888 912 aaKnown RBP14.11□□□□□ -0.15
SHMT2-213ENST00000554600 PRKRIP1Q9H875 184 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-213ENST00000554600 CCDC87Q9NVE4 849 aa14.11□□□□□ -0.15
SHMT2-213ENST00000554600 HTATSF1O43719 755 aaKnown RBP14.1□□□□□ -0.15
SHMT2-213ENST00000554600 ZNF496Q96IT1 587 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-213ENST00000554600 STARD3NLO95772 234 aa14.09□□□□□ -0.15
SHMT2-213ENST00000554600 CYP19A1P11511 503 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-213ENST00000554600 NFE2L2Q16236 605 aa14.09□□□□□ -0.15
SHMT2-213ENST00000554600 VSIG10Q8N0Z9 540 aa14.09□□□□□ -0.15
SHMT2-213ENST00000554600 FMNL2Q96PY5 1086 aa14.09□□□□□ -0.15
SHMT2-213ENST00000554600 PLEKHF1Q96S99 279 aa14.09□□□□□ -0.15
SHMT2-213ENST00000554600 KDM3BQ7LBC6 1761 aa14.09□□□□□ -0.15
SHMT2-213ENST00000554600 HEG1Q9ULI3 1381 aa14.09□□□□□ -0.15
SHMT2-213ENST00000554600 SENP3-EIF4A1A0A087X0R7 540 aa14.08□□□□□ -0.16
SHMT2-213ENST00000554600 KCNQ3O43525 872 aa14.08□□□□□ -0.16
SHMT2-213ENST00000554600 MMP10P09238 476 aa14.08□□□□□ -0.16
SHMT2-213ENST00000554600 CANXP27824 592 aaKnown RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 285.5 ms