RNA–Protein interactions for RNA: ENST00000551516.1

CPSF6-207, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2 BASIC

Gene CPSF6, Length 234 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-207ENST00000551516 USP17L3A6NCW0 530 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L4A6NCW7 530 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L5A8MUK1 530 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 PIK3CDO00329 1044 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 GGCXP38435 758 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 KCNC4Q03721 635 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 MAP7D1Q3KQU3 841 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 RNF20Q5VTR2 975 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 LARP1Q6PKG0 1096 aaKnown RBP3.89□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L2Q6R6M4 530 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 SH3BP5LQ7L8J4 393 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L1Q7RTZ2 530 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 SH3RF1Q7Z6J0 888 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 PLEKHM2Q8IWE5 1019 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 NKX2-3Q8TAU0 364 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 CARD14Q9BXL6 1004 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 HCSTQ9UBK5 93 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 CDC42BPBQ9Y5S2 1711 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 VWDEQ8N2E2 1590 aa3.89□□□□□ -1.79
CPSF6-207ENST00000551516 DHX29Q7Z478 1369 aaKnown RBP3.89□□□□□ -1.79
CPSF6-207ENST00000551516 C3P01024 1663 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 PREX1Q8TCU6 1659 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 ATP5J2-PTCD1G3V325 749 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 BRD1O95696 1058 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 HSPA1LP34931 641 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 HNRNPMP52272 730 aaKnown RBP eCLIP3.88□□□□□ -1.79
CPSF6-207ENST00000551516 NCOA4Q13772 614 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 ELOAQ14241 798 aaKnown RBP3.88□□□□□ -1.79
CPSF6-207ENST00000551516 EML3Q32P44 896 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 LINC01559Q495D7 138 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 KANK4Q5T7N3 995 aaPredicted RBP3.88□□□□□ -1.79
CPSF6-207ENST00000551516 DEPDC4Q8N2C3 294 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 PHTF2Q8N3S3 785 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 ZNF511Q8NB15 262 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 PLPP7Q8NBV4 271 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 OCSTAMPQ9BR26 566 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 MKRN1Q9UHC7 482 aaKnown RBP3.88□□□□□ -1.79
CPSF6-207ENST00000551516 CDV3Q9UKY7 258 aaKnown RBP3.88□□□□□ -1.79
CPSF6-207ENST00000551516 CCDC9Q9Y3X0 531 aaKnown RBP3.88□□□□□ -1.79
CPSF6-207ENST00000551516 CFAP74Q9C0B2 1584 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 CAMSAP1Q5T5Y3 1602 aa3.88□□□□□ -1.79
CPSF6-207ENST00000551516 RTEL1-TNFRSF6BF6WH68 1400 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 A2ML1A8K2U0 1454 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 A2MP01023 1474 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 PPEF1O14829 653 aaPredicted RBP3.87□□□□□ -1.79
CPSF6-207ENST00000551516 RASA1P20936 1047 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 ATP1A2P50993 1020 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 NBPF20Q3BBV1 942 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 ERFEQ4G0M1 354 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 B4GALNT3Q6L9W6 998 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 TRIM50Q86XT4 487 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 FAM174AQ8TBP5 190 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 FOXJ1Q92949 421 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 SIRT1Q96EB6 747 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 SLC10A4Q96EP9 437 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 NOD1Q9Y239 953 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 INO80Q9ULG1 1556 aaPredicted RBP3.87□□□□□ -1.79
CPSF6-207ENST00000551516 MIA2Q96PC5 1412 aa3.87□□□□□ -1.79
CPSF6-207ENST00000551516 NCOA2Q15596 1464 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 PREX2Q70Z35 1606 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 FAM196BA6NMK8 535 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 GIGYF1O75420 1035 aaPredicted RBP3.86□□□□□ -1.79
CPSF6-207ENST00000551516 SH3BP2P78314 561 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 KCNA1Q09470 495 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 CCDC125Q86Z20 511 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 ANKLE1Q8NAG6 615 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 FAM200AQ8TCP9 573 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 RNF166Q96A37 237 aaPredicted RBP3.86□□□□□ -1.79
CPSF6-207ENST00000551516 TRIM52Q96A61 297 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 NOVA2Q9UNW9 492 aaKnown RBP3.86□□□□□ -1.79
CPSF6-207ENST00000551516 DOLKQ9UPQ8 538 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 RBM19Q9Y4C8 960 aaKnown RBP3.86□□□□□ -1.79
CPSF6-207ENST00000551516 PZPP20742 1482 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 ARHGAP23Q9P227 1491 aa3.86□□□□□ -1.79
CPSF6-207ENST00000551516 ARHGAP5Q13017 1502 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 SYCP2Q9BX26 1530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 DNMT1P26358 1616 aaKnown RBP3.85□□□□□ -1.79
CPSF6-207ENST00000551516 CARNS1A5YM72 827 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 TMEM88BA6NKF7 163 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L15C9J2P7 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L10C9JJH3 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L13C9JLJ4 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L12C9JPN9 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L11C9JVI0 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L21D6R901 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L18D6R9N7 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L22D6RA61 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L17D6RBQ6 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L19D6RCP7 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L20D6RJB6 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 RNF223E7ERA6 249 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 ITGBL1O95965 494 aaPredicted RBP3.85□□□□□ -1.79
CPSF6-207ENST00000551516 VARSP26640 1264 aaKnown RBP3.85□□□□□ -1.79
CPSF6-207ENST00000551516 LTKP29376 864 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 RANGAP1P46060 587 aaPredicted RBP3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP17L24Q0WX57 530 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 USP4Q13107 963 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 OXLD1Q5BKU9 147 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 TRAF7Q6Q0C0 670 aa3.85□□□□□ -1.79
CPSF6-207ENST00000551516 SEPT12Q8IYM1 358 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms