RNA–Protein interactions for RNA: ENST00000551320.1

PRPF40B-214, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-214ENST00000551320 ABCC6O95255 1503 aa9.65□□□□□ -0.86
PRPF40B-214ENST00000551320 BCL9O00512 1426 aa9.65□□□□□ -0.87
PRPF40B-214ENST00000551320 PAPPAQ13219 1627 aa9.64□□□□□ -0.87
PRPF40B-214ENST00000551320 AMIGO3Q86WK7 504 aa9.64□□□□□ -0.87
PRPF40B-214ENST00000551320 MS4A3Q96HJ5 214 aa9.64□□□□□ -0.87
PRPF40B-214ENST00000551320 COG3Q96JB2 828 aa9.64□□□□□ -0.87
PRPF40B-214ENST00000551320 TFCP2L1Q9NZI6 479 aa9.64□□□□□ -0.87
PRPF40B-214ENST00000551320 NSD2O96028 1365 aa9.63□□□□□ -0.87
PRPF40B-214ENST00000551320 FYB1O15117 783 aa9.63□□□□□ -0.87
PRPF40B-214ENST00000551320 GPR162Q16538 588 aa9.63□□□□□ -0.87
PRPF40B-214ENST00000551320 HSP90AB2PQ58FF8 381 aa9.63□□□□□ -0.87
PRPF40B-214ENST00000551320 ZCRB1Q8TBF4 217 aaKnown RBP9.63□□□□□ -0.87
PRPF40B-214ENST00000551320 CEP350Q5VT06 3117 aa9.63□□□□□ -0.87
PRPF40B-214ENST00000551320 TUBGCP6Q96RT7 1819 aa9.62□□□□□ -0.87
PRPF40B-214ENST00000551320 PPM1GO15355 546 aaPredicted RBP9.62□□□□□ -0.87
PRPF40B-214ENST00000551320 COL23A1Q86Y22 540 aaPredicted RBP9.62□□□□□ -0.87
PRPF40B-214ENST00000551320 DOT1LQ8TEK3 1739 aa9.62□□□□□ -0.87
PRPF40B-214ENST00000551320 GTPBP6O43824 516 aaPredicted RBP9.61□□□□□ -0.87
PRPF40B-214ENST00000551320 POLR3GLQ9BT43 218 aa9.61□□□□□ -0.87
PRPF40B-214ENST00000551320 CARD14Q9BXL6 1004 aa9.61□□□□□ -0.87
PRPF40B-214ENST00000551320 CCNL1Q9UK58 526 aaPredicted RBP9.61□□□□□ -0.87
PRPF40B-214ENST00000551320 EMILIN1Q9Y6C2 1016 aa9.61□□□□□ -0.87
PRPF40B-214ENST00000551320 USP54Q70EL1 1684 aa9.61□□□□□ -0.87
PRPF40B-214ENST00000551320 FAM208AQ9UK61 1670 aaKnown RBP9.61□□□□□ -0.87
PRPF40B-214ENST00000551320 SHANK3Q9BYB0 1731 aa9.6□□□□□ -0.87
PRPF40B-214ENST00000551320 YBX3P16989 372 aaKnown RBP eCLIP9.6□□□□□ -0.87
PRPF40B-214ENST00000551320 TNNT2P45379 298 aaPredicted RBP9.6□□□□□ -0.87
PRPF40B-214ENST00000551320 POTEHQ6S545 545 aa9.6□□□□□ -0.87
PRPF40B-214ENST00000551320 MPRIPQ6WCQ1 1025 aa9.6□□□□□ -0.87
PRPF40B-214ENST00000551320 TRPC6Q9Y210 931 aa9.6□□□□□ -0.87
PRPF40B-214ENST00000551320 SENP3-EIF4A1A0A087X0R7 540 aa9.59□□□□□ -0.87
PRPF40B-214ENST00000551320 ANKRD36BQ8N2N9 1353 aa9.59□□□□□ -0.87
PRPF40B-214ENST00000551320 CYP27B1O15528 508 aa9.58□□□□□ -0.88
PRPF40B-214ENST00000551320 PHF14O94880 888 aa9.58□□□□□ -0.88
PRPF40B-214ENST00000551320 USP47Q96K76 1375 aa9.58□□□□□ -0.88
PRPF40B-214ENST00000551320 GALR2O43603 387 aaPredicted RBP9.57□□□□□ -0.88
PRPF40B-214ENST00000551320 POLD1P28340 1107 aa9.57□□□□□ -0.88
PRPF40B-214ENST00000551320 SLC27A3Q5K4L6 730 aa9.57□□□□□ -0.88
PRPF40B-214ENST00000551320 ZNF526Q8TF50 670 aaPredicted RBP9.57□□□□□ -0.88
PRPF40B-214ENST00000551320 RAPGEF4Q8WZA2 1011 aa9.57□□□□□ -0.88
PRPF40B-214ENST00000551320 TSHZ2Q9NRE2 1034 aa9.57□□□□□ -0.88
PRPF40B-214ENST00000551320 TATP17735 454 aaPredicted RBP9.56□□□□□ -0.88
PRPF40B-214ENST00000551320 TMEM106CQ9BVX2 250 aa9.56□□□□□ -0.88
PRPF40B-214ENST00000551320 C1QTNF8P60827 252 aa9.55□□□□□ -0.88
PRPF40B-214ENST00000551320 TMF1P82094 1093 aa9.55□□□□□ -0.88
PRPF40B-214ENST00000551320 EFCAB3Q8N7B9 438 aa9.55□□□□□ -0.88
PRPF40B-214ENST00000551320 PIGBQ92521 554 aa9.55□□□□□ -0.88
PRPF40B-214ENST00000551320 PCGF6Q9BYE7 350 aa9.55□□□□□ -0.88
PRPF40B-214ENST00000551320 RYDENQ9NUL5 291 aaKnown RBP9.55□□□□□ -0.88
PRPF40B-214ENST00000551320 NSD3Q9BZ95 1437 aa9.55□□□□□ -0.88
PRPF40B-214ENST00000551320 LY75O60449 1722 aa9.54□□□□□ -0.88
PRPF40B-214ENST00000551320 ASAP1Q9ULH1 1129 aa9.54□□□□□ -0.88
PRPF40B-214ENST00000551320 TOGARAM1Q9Y4F4 1720 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 PALLDQ8WX93 1383 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 CHD4Q14839 1912 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 ITPK1Q13572 414 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 VSIG10Q8N0Z9 540 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 LINC00116Q8NCU8 138 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 PUS7Q96PZ0 661 aaKnown RBP9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 EYA1Q99502 592 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 MFRPQ9BY79 579 aa9.53□□□□□ -0.88
PRPF40B-214ENST00000551320 INSRP06213 1382 aa9.52□□□□□ -0.88
PRPF40B-214ENST00000551320 TIE1P35590 1138 aa9.52□□□□□ -0.89
PRPF40B-214ENST00000551320 CLCN6P51797 869 aa9.52□□□□□ -0.89
PRPF40B-214ENST00000551320 SLC16A10Q8TF71 515 aa9.52□□□□□ -0.89
PRPF40B-214ENST00000551320 MAP3K5Q99683 1374 aa9.51□□□□□ -0.89
PRPF40B-214ENST00000551320 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.51□□□□□ -0.89
PRPF40B-214ENST00000551320 GOLGA2Q08379 1002 aa9.51□□□□□ -0.89
PRPF40B-214ENST00000551320 KIF20BQ96Q89 1820 aa9.51□□□□□ -0.89
PRPF40B-214ENST00000551320 PCDH11XQ9BZA7 1347 aa9.51□□□□□ -0.89
PRPF40B-214ENST00000551320 PCDH11YQ9BZA8 1340 aa9.51□□□□□ -0.89
PRPF40B-214ENST00000551320 RTL1A6NKG5 1358 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 FLT4P35916 1363 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 SMG6Q86US8 1419 aaKnown RBP9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 ITGB4P16144 1822 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 TTLL13PA6NNM8 815 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 GIGYF1O75420 1035 aaPredicted RBP9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 AK7Q96M32 723 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 SLC4A9Q96Q91 983 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 BMP2KQ9NSY1 1161 aaPredicted RBP9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 POLKQ9UBT6 870 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 C5P01031 1676 aa9.5□□□□□ -0.89
PRPF40B-214ENST00000551320 QSER1Q2KHR3 1735 aa9.49□□□□□ -0.89
PRPF40B-214ENST00000551320 GNPATO15228 680 aa9.49□□□□□ -0.89
PRPF40B-214ENST00000551320 CNGB1Q14028 1251 aaPredicted RBP9.49□□□□□ -0.89
PRPF40B-214ENST00000551320 EIF4A2Q14240 407 aaKnown RBP9.49□□□□□ -0.89
PRPF40B-214ENST00000551320 AEBP1Q8IUX7 1158 aa9.49□□□□□ -0.89
PRPF40B-214ENST00000551320 ATP10DQ9P241 1426 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 C4BP0C0L5 1744 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 COL24A1Q17RW2 1714 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 TAF1LQ8IZX4 1826 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 LOC102724428A0A0B4J2F2 783 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 ATP6V1AP38606 617 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 SIK1P57059 783 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 TRIM26Q12899 539 aaPredicted RBP9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 ATG3Q9NT62 314 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 TMOD3Q9NYL9 352 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 IGSF1Q8N6C5 1336 aa9.48□□□□□ -0.89
PRPF40B-214ENST00000551320 A0A0G2JLW4 131 aa9.47□□□□□ -0.89
PRPF40B-214ENST00000551320 PHKG2P15735 406 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms