RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 SNX21Q969T3 373 aa16.72■□□□□ 0.27
PRPF40B-209ENST00000548825 SIL1Q9H173 461 aa16.72■□□□□ 0.27
PRPF40B-209ENST00000548825 CHPF2Q9P2E5 772 aa16.72■□□□□ 0.27
PRPF40B-209ENST00000548825 CDK12Q9NYV4 1490 aaPredicted RBP16.72■□□□□ 0.27
PRPF40B-209ENST00000548825 PTCH1Q13635 1447 aa16.72■□□□□ 0.27
PRPF40B-209ENST00000548825 BAG4O95429 457 aaKnown RBP16.72■□□□□ 0.27
PRPF40B-209ENST00000548825 RAB3GAP1Q15042 981 aa16.72■□□□□ 0.27
PRPF40B-209ENST00000548825 USP32Q8NFA0 1604 aa16.71■□□□□ 0.27
PRPF40B-209ENST00000548825 PTPRCP08575 1304 aa16.71■□□□□ 0.27
PRPF40B-209ENST00000548825 BRPF1P55201 1214 aaPredicted RBP16.71■□□□□ 0.27
PRPF40B-209ENST00000548825 PPP1R42Q7Z4L9 355 aa16.71■□□□□ 0.27
PRPF40B-209ENST00000548825 PALD1Q9ULE6 856 aa16.71■□□□□ 0.27
PRPF40B-209ENST00000548825 PLCB2Q00722 1185 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 C9orf78Q9NZ63 289 aaPredicted RBP16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 MED14O60244 1454 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 NBPF7P0C2Y1 421 aaPredicted RBP16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 CWC27Q6UX04 472 aaKnown RBP16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 USP6P35125 1406 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 FLT4P35916 1363 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 GNAI3P08754 354 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 MRE11P49959 708 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 NBPF6Q5VWK0 638 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 NBPF4Q96M43 638 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 SPG7Q9UQ90 795 aa16.7■□□□□ 0.26
PRPF40B-209ENST00000548825 PRAMEF22A3QJZ6 481 aa16.69■□□□□ 0.26
PRPF40B-209ENST00000548825 KCNJ4P48050 445 aa16.69■□□□□ 0.26
PRPF40B-209ENST00000548825 PHF8Q9UPP1 1060 aa16.69■□□□□ 0.26
PRPF40B-209ENST00000548825 CPA1P15085 419 aa16.69■□□□□ 0.26
PRPF40B-209ENST00000548825 AK9Q5TCS8 1911 aa16.69■□□□□ 0.26
PRPF40B-209ENST00000548825 MYL6BP14649 208 aa16.68■□□□□ 0.26
PRPF40B-209ENST00000548825 PA2G4Q9UQ80 394 aaKnown RBP16.68■□□□□ 0.26
PRPF40B-209ENST00000548825 DDX17Q92841 729 aaKnown RBP16.68■□□□□ 0.26
PRPF40B-209ENST00000548825 ORAI2Q96SN7 254 aa16.68■□□□□ 0.26
PRPF40B-209ENST00000548825 SRCIN1Q9C0H9 1055 aa16.68■□□□□ 0.26
PRPF40B-209ENST00000548825 BTBD11A6QL63 1104 aa16.68■□□□□ 0.26
PRPF40B-209ENST00000548825 CSB-PGBD3P0DP91 1061 aa16.67■□□□□ 0.26
PRPF40B-209ENST00000548825 MCCP23508 829 aa16.67■□□□□ 0.26
PRPF40B-209ENST00000548825 ZNF330Q9Y3S2 320 aaPredicted RBP16.67■□□□□ 0.26
PRPF40B-209ENST00000548825 SLC39A6Q13433 755 aa16.67■□□□□ 0.26
PRPF40B-209ENST00000548825 FAM43AQ8N2R8 423 aa16.67■□□□□ 0.26
PRPF40B-209ENST00000548825 CHMP3Q9Y3E7 222 aa16.67■□□□□ 0.26
PRPF40B-209ENST00000548825 CWF19L2Q2TBE0 894 aaKnown RBP16.66■□□□□ 0.26
PRPF40B-209ENST00000548825 C1orf141Q5JVX7 400 aa16.66■□□□□ 0.26
PRPF40B-209ENST00000548825 USP44Q9H0E7 712 aa16.66■□□□□ 0.26
PRPF40B-209ENST00000548825 NASPP49321 788 aaPredicted RBP16.66■□□□□ 0.26
PRPF40B-209ENST00000548825 ARID3AQ99856 593 aa16.65■□□□□ 0.26
PRPF40B-209ENST00000548825 NLRP2Q9NX02 1062 aa16.65■□□□□ 0.26
PRPF40B-209ENST00000548825 PTPRUQ92729 1446 aa16.65■□□□□ 0.26
PRPF40B-209ENST00000548825 KIAA1211Q6ZU35 1233 aa16.65■□□□□ 0.26
PRPF40B-209ENST00000548825 TMX3Q96JJ7 454 aa16.65■□□□□ 0.26
PRPF40B-209ENST00000548825 ADAMTS13Q76LX8 1427 aa16.64■□□□□ 0.25
PRPF40B-209ENST00000548825 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.64■□□□□ 0.25
PRPF40B-209ENST00000548825 IL25Q9H293 177 aa16.64■□□□□ 0.25
PRPF40B-209ENST00000548825 CIZ1Q9ULV3 898 aaPredicted RBP16.64■□□□□ 0.25
PRPF40B-209ENST00000548825 KIF20BQ96Q89 1820 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 SYCE3A1L190 88 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 KLHDC4Q8TBB5 520 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 ESYT1Q9BSJ8 1104 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 SBNO1A3KN83 1393 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 NUCB2P80303 420 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 CABLES1Q8TDN4 633 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 TCEANC2Q96MN5 208 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 ATP10DQ9P241 1426 aa16.63■□□□□ 0.25
PRPF40B-209ENST00000548825 ATP8B2P98198 1209 aa16.62■□□□□ 0.25
PRPF40B-209ENST00000548825 PROSER3Q2NL68 480 aa16.62■□□□□ 0.25
PRPF40B-209ENST00000548825 RIMBP3CA6NJZ7 1639 aa16.62■□□□□ 0.25
PRPF40B-209ENST00000548825 RIMBP3BA6NNM3 1639 aa16.62■□□□□ 0.25
PRPF40B-209ENST00000548825 RIMBP3Q9UFD9 1639 aa16.62■□□□□ 0.25
PRPF40B-209ENST00000548825 A0A0G2JS52 829 aa16.62■□□□□ 0.25
PRPF40B-209ENST00000548825 CCDC8Q9H0W5 538 aaPredicted RBP16.62■□□□□ 0.25
PRPF40B-209ENST00000548825 TTC21AQ8NDW8 1320 aa16.61■□□□□ 0.25
PRPF40B-209ENST00000548825 SKOR2Q2VWA4 1001 aaPredicted RBP16.61■□□□□ 0.25
PRPF40B-209ENST00000548825 TBX22Q9Y458 520 aa16.61■□□□□ 0.25
PRPF40B-209ENST00000548825 IGSF1Q8N6C5 1336 aa16.61■□□□□ 0.25
PRPF40B-209ENST00000548825 CHMLP26374 656 aa16.61■□□□□ 0.25
PRPF40B-209ENST00000548825 MAP3K2Q9Y2U5 619 aa16.61■□□□□ 0.25
PRPF40B-209ENST00000548825 DIP2BQ9P265 1576 aa16.61■□□□□ 0.25
PRPF40B-209ENST00000548825 DNAAF4Q8WXU2 420 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 DIAPH3Q9NSV4 1193 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 NSFL1CQ9UNZ2 370 aaKnown RBP16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 DLC1Q96QB1 1528 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 CRB1P82279 1406 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 SOS1Q07889 1333 aaPredicted RBP16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 FSD2A1L4K1 749 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 RHPN1Q8TCX5 695 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 NDUFB9Q9Y6M9 179 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 CDC42BPGQ6DT37 1551 aa16.6■□□□□ 0.25
PRPF40B-209ENST00000548825 PPFIA3O75145 1194 aa16.59■□□□□ 0.25
PRPF40B-209ENST00000548825 CHRNA2Q15822 529 aa16.59■□□□□ 0.25
PRPF40B-209ENST00000548825 KIAA0232Q92628 1395 aa16.59■□□□□ 0.25
PRPF40B-209ENST00000548825 MAP3K5Q99683 1374 aa16.59■□□□□ 0.25
PRPF40B-209ENST00000548825 IFIT2P09913 472 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-209ENST00000548825 RGS12O14924 1447 aa16.59■□□□□ 0.25
PRPF40B-209ENST00000548825 ESPNB1AK53 854 aa16.58■□□□□ 0.25
PRPF40B-209ENST00000548825 PTMAP06454 111 aaKnown RBP16.58■□□□□ 0.25
PRPF40B-209ENST00000548825 SIRT1Q96EB6 747 aa16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 NAP1L2Q9ULW6 460 aaPredicted RBP16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 CEP170BQ9Y4F5 1589 aaPredicted RBP16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 OVOS2A0A0J9YW53 1432 aa16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 OVOS2Q6IE36 1432 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms