RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 HMMRO75330 724 aa23.01■■□□□ 1.27
PRPF40B-208ENST00000548436 GCP02774 474 aa23.01■■□□□ 1.27
PRPF40B-208ENST00000548436 SNX21Q969T3 373 aa23.01■■□□□ 1.27
PRPF40B-208ENST00000548436 TRPM3Q9HCF6 1732 aaPredicted RBP23■■□□□ 1.27
PRPF40B-208ENST00000548436 GNAI2P04899 355 aa23■■□□□ 1.27
PRPF40B-208ENST00000548436 PLEKHG5O94827 1062 aa22.99■■□□□ 1.27
PRPF40B-208ENST00000548436 ARHGEF25Q86VW2 580 aa22.99■■□□□ 1.27
PRPF40B-208ENST00000548436 HDGFL1Q5TGJ6 251 aa22.97■■□□□ 1.27
PRPF40B-208ENST00000548436 NCOA3Q9Y6Q9 1424 aa22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 GNAI3P08754 354 aa22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 SDSP20132 328 aa22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 EIF4A1P60842 406 aaKnown RBP22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 LMOD2Q6P5Q4 547 aa22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 PROSER2Q86WR7 435 aaPredicted RBP22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 PHAXQ9H814 394 aaKnown RBP22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 PXDNLA1KZ92 1463 aa22.96■■□□□ 1.27
PRPF40B-208ENST00000548436 RGPD5Q99666 1765 aa22.95■■□□□ 1.26
PRPF40B-208ENST00000548436 CHMP5Q9NZZ3 219 aa22.95■■□□□ 1.26
PRPF40B-208ENST00000548436 NCAPD2Q15021 1401 aa22.95■■□□□ 1.26
PRPF40B-208ENST00000548436 AKAP4Q5JQC9 854 aa22.94■■□□□ 1.26
PRPF40B-208ENST00000548436 ZNF530Q6P9A1 599 aaPredicted RBP22.94■■□□□ 1.26
PRPF40B-208ENST00000548436 KCNQ3O43525 872 aa22.94■■□□□ 1.26
PRPF40B-208ENST00000548436 EXOC6BQ9Y2D4 811 aa22.94■■□□□ 1.26
PRPF40B-208ENST00000548436 PNMA6EA0A0J9YXQ4 647 aa22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 CD2BP2O95400 341 aaKnown RBP22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 PLEKHO1Q53GL0 409 aaPredicted RBP22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 KRT28Q7Z3Y7 464 aa22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 ATP8B2P98198 1209 aa22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 MPRIPQ6WCQ1 1025 aa22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 RBM42Q9BTD8 480 aaKnown RBP22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 USP44Q9H0E7 712 aa22.93■■□□□ 1.26
PRPF40B-208ENST00000548436 PXDNQ92626 1479 aa22.92■■□□□ 1.26
PRPF40B-208ENST00000548436 LMTK3Q96Q04 1460 aa22.92■■□□□ 1.26
PRPF40B-208ENST00000548436 KIF1AQ12756 1690 aa22.92■■□□□ 1.26
PRPF40B-208ENST00000548436 EIF2S2P20042 333 aaKnown RBP22.92■■□□□ 1.26
PRPF40B-208ENST00000548436 ANKRD24Q8TF21 1146 aa22.92■■□□□ 1.26
PRPF40B-208ENST00000548436 C1orf167Q5SNV9 1468 aa22.92■■□□□ 1.26
PRPF40B-208ENST00000548436 CAMTA1Q9Y6Y1 1673 aa22.92■■□□□ 1.26
PRPF40B-208ENST00000548436 DDIT3P35638 169 aa22.91■■□□□ 1.26
PRPF40B-208ENST00000548436 AXIN2Q9Y2T1 843 aa22.91■■□□□ 1.26
PRPF40B-208ENST00000548436 LRRFIP2Q9Y608 721 aaKnown RBP22.91■■□□□ 1.26
PRPF40B-208ENST00000548436 TUBGCP6Q96RT7 1819 aa22.91■■□□□ 1.26
PRPF40B-208ENST00000548436 OSBPL3Q9H4L5 887 aa22.91■■□□□ 1.26
PRPF40B-208ENST00000548436 PDE1AP54750 535 aa22.9■■□□□ 1.26
PRPF40B-208ENST00000548436 TEFQ10587 303 aa22.9■■□□□ 1.26
PRPF40B-208ENST00000548436 AMOTQ4VCS5 1084 aa22.9■■□□□ 1.26
PRPF40B-208ENST00000548436 BTBD11A6QL63 1104 aa22.89■■□□□ 1.26
PRPF40B-208ENST00000548436 HOXB7P09629 217 aa22.89■■□□□ 1.26
PRPF40B-208ENST00000548436 USP26Q9BXU7 913 aa22.89■■□□□ 1.25
PRPF40B-208ENST00000548436 C19orf44Q9H6X5 657 aa22.89■■□□□ 1.25
PRPF40B-208ENST00000548436 CHPF2Q9P2E5 772 aa22.89■■□□□ 1.25
PRPF40B-208ENST00000548436 ALS2Q96Q42 1657 aa22.89■■□□□ 1.25
PRPF40B-208ENST00000548436 RNMTO43148 476 aaKnown RBP22.88■■□□□ 1.25
PRPF40B-208ENST00000548436 EIF5BO60841 1220 aaKnown RBP22.88■■□□□ 1.25
PRPF40B-208ENST00000548436 HSP90AB1P08238 724 aaKnown RBP22.88■■□□□ 1.25
PRPF40B-208ENST00000548436 SALL3Q9BXA9 1300 aa22.88■■□□□ 1.25
PRPF40B-208ENST00000548436 LRRCC1Q9C099 1032 aa22.88■■□□□ 1.25
PRPF40B-208ENST00000548436 IBTKQ9P2D0 1353 aaPredicted RBP22.87■■□□□ 1.25
PRPF40B-208ENST00000548436 UBTFL1P0CB47 393 aaPredicted RBP22.86■■□□□ 1.25
PRPF40B-208ENST00000548436 MCM4P33991 863 aa22.86■■□□□ 1.25
PRPF40B-208ENST00000548436 C1orf141Q5JVX7 400 aa22.86■■□□□ 1.25
PRPF40B-208ENST00000548436 SIPA1L3O60292 1781 aaPredicted RBP22.86■■□□□ 1.25
PRPF40B-208ENST00000548436 K7ELQ4 463 aaPredicted RBP22.85■■□□□ 1.25
PRPF40B-208ENST00000548436 MST1RQ04912 1400 aa22.85■■□□□ 1.25
PRPF40B-208ENST00000548436 TSHZ3Q63HK5 1081 aa22.85■■□□□ 1.25
PRPF40B-208ENST00000548436 CASC1Q6TDU7 716 aa22.85■■□□□ 1.25
PRPF40B-208ENST00000548436 SRCIN1Q9C0H9 1055 aa22.85■■□□□ 1.25
PRPF40B-208ENST00000548436 STRCP1A6NGW2 1772 aa22.84■■□□□ 1.25
PRPF40B-208ENST00000548436 ANXA1P04083 346 aa22.84■■□□□ 1.25
PRPF40B-208ENST00000548436 HSPA2P54652 639 aa22.84■■□□□ 1.25
PRPF40B-208ENST00000548436 OVOS2A0A0G2JMS6 1433 aa22.84■■□□□ 1.25
PRPF40B-208ENST00000548436 AEBP2Q6ZN18 517 aaPredicted RBP22.83■■□□□ 1.24
PRPF40B-208ENST00000548436 PI4KAP2A4QPH2 592 aa22.82■■□□□ 1.24
PRPF40B-208ENST00000548436 ZC3H6P61129 1189 aaKnown RBP22.82■■□□□ 1.24
PRPF40B-208ENST00000548436 PI4KAP1Q8N8J0 262 aa22.82■■□□□ 1.24
PRPF40B-208ENST00000548436 SSH3Q8TE77 659 aa22.82■■□□□ 1.24
PRPF40B-208ENST00000548436 BEND3Q5T5X7 828 aa22.81■■□□□ 1.24
PRPF40B-208ENST00000548436 DNAAF4Q8WXU2 420 aa22.81■■□□□ 1.24
PRPF40B-208ENST00000548436 CHMP4AQ9BY43 222 aa22.81■■□□□ 1.24
PRPF40B-208ENST00000548436 ERBB3P21860 1342 aa22.81■■□□□ 1.24
PRPF40B-208ENST00000548436 ADAMTS7Q9UKP4 1686 aa22.81■■□□□ 1.24
PRPF40B-208ENST00000548436 MX1P20591 662 aa22.81■■□□□ 1.24
PRPF40B-208ENST00000548436 RABEP1Q15276 862 aa22.81■■□□□ 1.24
PRPF40B-208ENST00000548436 DDX17Q92841 729 aaKnown RBP22.8■■□□□ 1.24
PRPF40B-208ENST00000548436 FOXD4L1Q9NU39 408 aa22.8■■□□□ 1.24
PRPF40B-208ENST00000548436 ADCY9O60503 1353 aa22.8■■□□□ 1.24
PRPF40B-208ENST00000548436 HEG1Q9ULI3 1381 aa22.8■■□□□ 1.24
PRPF40B-208ENST00000548436 NBPF7P0C2Y1 421 aaPredicted RBP22.8■■□□□ 1.24
PRPF40B-208ENST00000548436 PPP1R42Q7Z4L9 355 aa22.8■■□□□ 1.24
PRPF40B-208ENST00000548436 CIZ1Q9ULV3 898 aaPredicted RBP22.8■■□□□ 1.24
PRPF40B-208ENST00000548436 ERC2O15083 957 aa22.79■■□□□ 1.24
PRPF40B-208ENST00000548436 GIGYF1O75420 1035 aaPredicted RBP22.79■■□□□ 1.24
PRPF40B-208ENST00000548436 POLA2Q14181 598 aa22.79■■□□□ 1.24
PRPF40B-208ENST00000548436 TMEM94Q12767 1356 aa22.79■■□□□ 1.24
PRPF40B-208ENST00000548436 REC8O95072 547 aa22.78■■□□□ 1.24
PRPF40B-208ENST00000548436 HSP90AA1P07900 732 aaKnown RBP22.78■■□□□ 1.24
PRPF40B-208ENST00000548436 ATF3P18847 181 aa22.78■■□□□ 1.24
PRPF40B-208ENST00000548436 DBF4Q9UBU7 674 aaPredicted RBP22.78■■□□□ 1.24
PRPF40B-208ENST00000548436 STAP2Q9UGK3 403 aa22.78■■□□□ 1.24
PRPF40B-208ENST00000548436 CRYBG1Q9Y4K1 1723 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms