RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TRIM35Q9UPQ4 493 aa15.96■□□□□ 0.15
DDX55-210ENST00000543016 RRP7AQ9Y3A4 280 aaKnown RBP15.96■□□□□ 0.15
DDX55-210ENST00000543016 MRC1P22897 1456 aa15.96■□□□□ 0.14
DDX55-210ENST00000543016 PLSCR1O15162 318 aa15.95■□□□□ 0.14
DDX55-210ENST00000543016 TAF7Q15545 349 aaPredicted RBP15.95■□□□□ 0.14
DDX55-210ENST00000543016 MCM10Q7L590 875 aa15.95■□□□□ 0.14
DDX55-210ENST00000543016 UPF1Q92900 1129 aaKnown RBP eCLIP15.95■□□□□ 0.14
DDX55-210ENST00000543016 SCN11AQ9UI33 1791 aa15.95■□□□□ 0.14
DDX55-210ENST00000543016 SBF2Q86WG5 1849 aa15.94■□□□□ 0.14
DDX55-210ENST00000543016 APBA3O96018 575 aa15.94■□□□□ 0.14
DDX55-210ENST00000543016 BAG6P46379 1132 aa15.94■□□□□ 0.14
DDX55-210ENST00000543016 DOT1LQ8TEK3 1739 aa15.94■□□□□ 0.14
DDX55-210ENST00000543016 DCTN1Q14203 1278 aa15.92■□□□□ 0.14
DDX55-210ENST00000543016 WDR63Q8IWG1 891 aa15.92■□□□□ 0.14
DDX55-210ENST00000543016 WWC1Q8IX03 1113 aa15.92■□□□□ 0.14
DDX55-210ENST00000543016 IL16Q14005 1332 aa15.92■□□□□ 0.14
DDX55-210ENST00000543016 TOGARAM1Q9Y4F4 1720 aa15.91■□□□□ 0.14
DDX55-210ENST00000543016 BTBD11A6QL63 1104 aa15.91■□□□□ 0.14
DDX55-210ENST00000543016 DLG5Q8TDM6 1919 aa15.91■□□□□ 0.14
DDX55-210ENST00000543016 ITGB4P16144 1822 aa15.9■□□□□ 0.14
DDX55-210ENST00000543016 SLC27A3Q5K4L6 730 aa15.9■□□□□ 0.14
DDX55-210ENST00000543016 PTF1AQ7RTS3 328 aa15.9■□□□□ 0.14
DDX55-210ENST00000543016 TTC5Q8N0Z6 440 aa15.9■□□□□ 0.14
DDX55-210ENST00000543016 CFAP44Q96MT7 982 aa15.9■□□□□ 0.14
DDX55-210ENST00000543016 ATG3Q9NT62 314 aa15.9■□□□□ 0.14
DDX55-210ENST00000543016 IFT57Q9NWB7 429 aa15.9■□□□□ 0.14
DDX55-210ENST00000543016 SOCS7O14512 581 aa15.89■□□□□ 0.13
DDX55-210ENST00000543016 GNAI1P63096 354 aa15.89■□□□□ 0.13
DDX55-210ENST00000543016 ZNF790Q6PG37 636 aa15.89■□□□□ 0.13
DDX55-210ENST00000543016 ASAP1Q9ULH1 1129 aa15.89■□□□□ 0.13
DDX55-210ENST00000543016 PALLDQ8WX93 1383 aa15.88■□□□□ 0.13
DDX55-210ENST00000543016 CHL1O00533 1208 aa15.88■□□□□ 0.13
DDX55-210ENST00000543016 THUMPD2Q9BTF0 503 aaKnown RBP15.88■□□□□ 0.13
DDX55-210ENST00000543016 BTAF1O14981 1849 aa15.87■□□□□ 0.13
DDX55-210ENST00000543016 ZNF853P0CG23 659 aa15.87■□□□□ 0.13
DDX55-210ENST00000543016 VSIG10Q8N0Z9 540 aa15.87■□□□□ 0.13
DDX55-210ENST00000543016 CAMKK2Q96RR4 588 aa15.87■□□□□ 0.13
DDX55-210ENST00000543016 TNS1Q9HBL0 1735 aaKnown RBP15.87■□□□□ 0.13
DDX55-210ENST00000543016 ZNF521Q96K83 1311 aa15.87■□□□□ 0.13
DDX55-210ENST00000543016 RGPD3A6NKT7 1758 aaPredicted RBP15.86■□□□□ 0.13
DDX55-210ENST00000543016 RGPD4Q7Z3J3 1758 aa15.86■□□□□ 0.13
DDX55-210ENST00000543016 LOC102724428A0A0B4J2F2 783 aa15.86■□□□□ 0.13
DDX55-210ENST00000543016 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
DDX55-210ENST00000543016 SIK1P57059 783 aa15.86■□□□□ 0.13
DDX55-210ENST00000543016 FMNL2Q96PY5 1086 aa15.86■□□□□ 0.13
DDX55-210ENST00000543016 TEX13AQ9BXU3 409 aaPredicted RBP15.86■□□□□ 0.13
DDX55-210ENST00000543016 TSPYL4Q9UJ04 414 aa15.86■□□□□ 0.13
DDX55-210ENST00000543016 SIPA1L3O60292 1781 aaPredicted RBP15.85■□□□□ 0.13
DDX55-210ENST00000543016 VIRMAQ69YN4 1812 aaKnown RBP15.85■□□□□ 0.13
DDX55-210ENST00000543016 HNRNPUQ00839 825 aaKnown RBP eCLIP15.85■□□□□ 0.13
DDX55-210ENST00000543016 EN1Q05925 392 aaPredicted RBP15.85■□□□□ 0.13
DDX55-210ENST00000543016 SLC39A6Q13433 755 aa15.85■□□□□ 0.13
DDX55-210ENST00000543016 TXNRD1Q16881 649 aa15.85■□□□□ 0.13
DDX55-210ENST00000543016 SALL2Q9Y467 1007 aaPredicted RBP15.85■□□□□ 0.13
DDX55-210ENST00000543016 GOLGA2Q08379 1002 aa15.84■□□□□ 0.13
DDX55-210ENST00000543016 CHMP4AQ9BY43 222 aa15.84■□□□□ 0.13
DDX55-210ENST00000543016 MYH16Q9H6N6 1097 aa15.84■□□□□ 0.13
DDX55-210ENST00000543016 CCNL1Q9UK58 526 aaPredicted RBP15.84■□□□□ 0.13
DDX55-210ENST00000543016 DEFB132Q7Z7B7 95 aa15.83■□□□□ 0.12
DDX55-210ENST00000543016 RBM42Q9BTD8 480 aaKnown RBP15.83■□□□□ 0.12
DDX55-210ENST00000543016 LAS1LQ9Y4W2 734 aaKnown RBP15.83■□□□□ 0.12
DDX55-210ENST00000543016 E9PSI1 815 aa15.82■□□□□ 0.12
DDX55-210ENST00000543016 PTCD1O75127 700 aaKnown RBP15.82■□□□□ 0.12
DDX55-210ENST00000543016 SNRPA1P09661 255 aaKnown RBP15.82■□□□□ 0.12
DDX55-210ENST00000543016 ATP6V1AP38606 617 aa15.82■□□□□ 0.12
DDX55-210ENST00000543016 EIF4A1P60842 406 aaKnown RBP15.82■□□□□ 0.12
DDX55-210ENST00000543016 EZH2Q15910 746 aaKnown RBP15.82■□□□□ 0.12
DDX55-210ENST00000543016 PROM2Q8N271 834 aa15.82■□□□□ 0.12
DDX55-210ENST00000543016 ZNF496Q96IT1 587 aaPredicted RBP15.82■□□□□ 0.12
DDX55-210ENST00000543016 MIS18AQ9NYP9 233 aa15.82■□□□□ 0.12
DDX55-210ENST00000543016 SOS1Q07889 1333 aaPredicted RBP15.82■□□□□ 0.12
DDX55-210ENST00000543016 HEG1Q9ULI3 1381 aa15.82■□□□□ 0.12
DDX55-210ENST00000543016 EP400Q96L91 3159 aa15.82■□□□□ 0.12
DDX55-210ENST00000543016 PAPPAQ13219 1627 aa15.82■□□□□ 0.12
DDX55-210ENST00000543016 HOXB7P09629 217 aa15.81■□□□□ 0.12
DDX55-210ENST00000543016 ZNF831Q5JPB2 1677 aa15.81■□□□□ 0.12
DDX55-210ENST00000543016 ZBED9Q6R2W3 1325 aa15.81■□□□□ 0.12
DDX55-210ENST00000543016 MBIPQ9NS73 344 aa15.81■□□□□ 0.12
DDX55-210ENST00000543016 LY75O60449 1722 aa15.8■□□□□ 0.12
DDX55-210ENST00000543016 KCPQ6ZWJ8 1503 aa15.8■□□□□ 0.12
DDX55-210ENST00000543016 KCNQ3O43525 872 aa15.8■□□□□ 0.12
DDX55-210ENST00000543016 STARD3NLO95772 234 aa15.8■□□□□ 0.12
DDX55-210ENST00000543016 NBPF14Q5TI25 921 aa15.8■□□□□ 0.12
DDX55-210ENST00000543016 SENP3-EIF4A1A0A087X0R7 540 aa15.79■□□□□ 0.12
DDX55-210ENST00000543016 RC3H1Q5TC82 1133 aaKnown RBP15.79■□□□□ 0.12
DDX55-210ENST00000543016 KDM3BQ7LBC6 1761 aa15.78■□□□□ 0.12
DDX55-210ENST00000543016 UBR2Q8IWV8 1755 aa15.78■□□□□ 0.12
DDX55-210ENST00000543016 GIGYF1O75420 1035 aaPredicted RBP15.78■□□□□ 0.12
DDX55-210ENST00000543016 SLFN5Q08AF3 891 aa15.78■□□□□ 0.12
DDX55-210ENST00000543016 SLC4A9Q96Q91 983 aa15.78■□□□□ 0.12
DDX55-210ENST00000543016 LRRC4BQ9NT99 713 aa15.78■□□□□ 0.12
DDX55-210ENST00000543016 CICQ96RK0 1608 aaPredicted RBP15.77■□□□□ 0.12
DDX55-210ENST00000543016 ITPK1Q13572 414 aa15.77■□□□□ 0.12
DDX55-210ENST00000543016 CNTNAP4Q9C0A0 1308 aa15.76■□□□□ 0.11
DDX55-210ENST00000543016 FANCIQ9NVI1 1328 aa15.76■□□□□ 0.11
DDX55-210ENST00000543016 DNAJC10Q8IXB1 793 aa15.76■□□□□ 0.11
DDX55-210ENST00000543016 ERBB4Q15303 1308 aa15.75■□□□□ 0.11
DDX55-210ENST00000543016 CYP19A1P11511 503 aaPredicted RBP15.75■□□□□ 0.11
DDX55-210ENST00000543016 TRMT2AQ8IZ69 625 aaKnown RBP15.75■□□□□ 0.11
DDX55-210ENST00000543016 STK32BQ9NY57 414 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms