RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 CARD10Q9BWT7 1032 aa21.56■■□□□ 1.04
COPS3-212ENST00000539941 RNMTO43148 476 aaKnown RBP21.56■■□□□ 1.04
COPS3-212ENST00000539941 TRIM27P14373 513 aa21.56■■□□□ 1.04
COPS3-212ENST00000539941 TOM1L2Q6ZVM7 507 aa21.56■■□□□ 1.04
COPS3-212ENST00000539941 FTSJ3Q8IY81 847 aaKnown RBP21.56■■□□□ 1.04
COPS3-212ENST00000539941 TEFQ10587 303 aa21.55■■□□□ 1.04
COPS3-212ENST00000539941 MIS18AQ9NYP9 233 aa21.55■■□□□ 1.04
COPS3-212ENST00000539941 USP21Q9UK80 565 aa21.55■■□□□ 1.04
COPS3-212ENST00000539941 COG6Q9Y2V7 657 aa21.55■■□□□ 1.04
COPS3-212ENST00000539941 KDM3BQ7LBC6 1761 aa21.54■■□□□ 1.04
COPS3-212ENST00000539941 LGR6Q9HBX8 967 aa21.54■■□□□ 1.04
COPS3-212ENST00000539941 RLBP1P12271 317 aa21.53■■□□□ 1.04
COPS3-212ENST00000539941 RBM6P78332 1123 aaKnown RBP21.53■■□□□ 1.04
COPS3-212ENST00000539941 MPRIPQ6WCQ1 1025 aa21.53■■□□□ 1.04
COPS3-212ENST00000539941 EVA1CP58658 441 aa21.53■■□□□ 1.04
COPS3-212ENST00000539941 MVPQ14764 893 aaKnown RBP21.53■■□□□ 1.04
COPS3-212ENST00000539941 IFNL2Q8IZJ0 200 aa21.53■■□□□ 1.04
COPS3-212ENST00000539941 SIPA1L3O60292 1781 aaPredicted RBP21.52■■□□□ 1.04
COPS3-212ENST00000539941 SCN11AQ9UI33 1791 aa21.52■■□□□ 1.04
COPS3-212ENST00000539941 PHKG2P15735 406 aa21.52■■□□□ 1.04
COPS3-212ENST00000539941 KRT24Q2M2I5 525 aa21.52■■□□□ 1.04
COPS3-212ENST00000539941 HSP90AB1P08238 724 aaKnown RBP21.51■■□□□ 1.03
COPS3-212ENST00000539941 TNNQ9UQP3 1299 aa21.51■■□□□ 1.03
COPS3-212ENST00000539941 CLUAP1Q96AJ1 413 aa21.5■■□□□ 1.03
COPS3-212ENST00000539941 BCL9LQ86UU0 1499 aa21.5■■□□□ 1.03
COPS3-212ENST00000539941 CHMP4AQ9BY43 222 aa21.5■■□□□ 1.03
COPS3-212ENST00000539941 API5Q9BZZ5 524 aaKnown RBP21.5■■□□□ 1.03
COPS3-212ENST00000539941 STRN4Q9NRL3 753 aa21.5■■□□□ 1.03
COPS3-212ENST00000539941 HOXB7P09629 217 aa21.49■■□□□ 1.03
COPS3-212ENST00000539941 LARP1Q6PKG0 1096 aaKnown RBP21.49■■□□□ 1.03
COPS3-212ENST00000539941 BTG4Q9NY30 223 aa21.49■■□□□ 1.03
COPS3-212ENST00000539941 TRPC5Q9UL62 973 aaPredicted RBP21.49■■□□□ 1.03
COPS3-212ENST00000539941 DDX19BQ9UMR2 479 aa21.49■■□□□ 1.03
COPS3-212ENST00000539941 IL2RBP14784 551 aa21.48■■□□□ 1.03
COPS3-212ENST00000539941 MRC1P22897 1456 aa21.48■■□□□ 1.03
COPS3-212ENST00000539941 CACNA1FO60840 1977 aa21.47■■□□□ 1.03
COPS3-212ENST00000539941 KDM6AO15550 1401 aaPredicted RBP21.47■■□□□ 1.03
COPS3-212ENST00000539941 BTBD11A6QL63 1104 aa21.47■■□□□ 1.03
COPS3-212ENST00000539941 DCAF5Q96JK2 942 aa21.47■■□□□ 1.03
COPS3-212ENST00000539941 PTPRCP08575 1304 aa21.47■■□□□ 1.03
COPS3-212ENST00000539941 PCDH11XQ9BZA7 1347 aa21.47■■□□□ 1.03
COPS3-212ENST00000539941 PCDH11YQ9BZA8 1340 aa21.47■■□□□ 1.03
COPS3-212ENST00000539941 CYP27B1O15528 508 aa21.46■■□□□ 1.03
COPS3-212ENST00000539941 EIF4A1P60842 406 aaKnown RBP21.46■■□□□ 1.03
COPS3-212ENST00000539941 CCDC30Q5VVM6 783 aa21.46■■□□□ 1.03
COPS3-212ENST00000539941 CENPQQ7L2Z9 268 aaPredicted RBP21.46■■□□□ 1.03
COPS3-212ENST00000539941 ZCRB1Q8TBF4 217 aaKnown RBP21.46■■□□□ 1.03
COPS3-212ENST00000539941 CHMP4BQ9H444 224 aaKnown RBP21.46■■□□□ 1.03
COPS3-212ENST00000539941 ABCC4O15439 1325 aa21.45■■□□□ 1.02
COPS3-212ENST00000539941 KDM2BQ8NHM5 1336 aa21.45■■□□□ 1.02
COPS3-212ENST00000539941 ATRNO75882 1429 aa21.45■■□□□ 1.02
COPS3-212ENST00000539941 PLCH1Q4KWH8 1693 aa21.44■■□□□ 1.02
COPS3-212ENST00000539941 TCERG1O14776 1098 aaKnown RBP21.44■■□□□ 1.02
COPS3-212ENST00000539941 ITPRIPQ8IWB1 547 aa21.44■■□□□ 1.02
COPS3-212ENST00000539941 TMEM57Q8N5G2 664 aa21.44■■□□□ 1.02
COPS3-212ENST00000539941 UPF1Q92900 1129 aaKnown RBP eCLIP21.44■■□□□ 1.02
COPS3-212ENST00000539941 STK31Q9BXU1 1019 aa21.44■■□□□ 1.02
COPS3-212ENST00000539941 SLC52A2Q9HAB3 445 aa21.44■■□□□ 1.02
COPS3-212ENST00000539941 RGS12O14924 1447 aa21.43■■□□□ 1.02
COPS3-212ENST00000539941 UNC5CLQ8IV45 518 aa21.43■■□□□ 1.02
COPS3-212ENST00000539941 SLIT2O94813 1529 aa21.42■■□□□ 1.02
COPS3-212ENST00000539941 MSH5O43196 834 aa21.42■■□□□ 1.02
COPS3-212ENST00000539941 SLC4A2P04920 1241 aa21.42■■□□□ 1.02
COPS3-212ENST00000539941 HEG1Q9ULI3 1381 aa21.41■■□□□ 1.02
COPS3-212ENST00000539941 SHANK3Q9BYB0 1731 aa21.41■■□□□ 1.02
COPS3-212ENST00000539941 NKX1-1Q15270 411 aaPredicted RBP21.4■■□□□ 1.02
COPS3-212ENST00000539941 GJD4Q96KN9 370 aaPredicted RBP21.4■■□□□ 1.02
COPS3-212ENST00000539941 NRAPQ86VF7 1730 aa21.4■■□□□ 1.02
COPS3-212ENST00000539941 NWD2Q9ULI1 1742 aa21.4■■□□□ 1.02
COPS3-212ENST00000539941 DISP2A7MBM2 1401 aa21.4■■□□□ 1.02
COPS3-212ENST00000539941 HDGFL1Q5TGJ6 251 aa21.38■■□□□ 1.01
COPS3-212ENST00000539941 KCNQ3O43525 872 aa21.37■■□□□ 1.01
COPS3-212ENST00000539941 ZBTB40Q9NUA8 1239 aa21.37■■□□□ 1.01
COPS3-212ENST00000539941 WNK3Q9BYP7 1800 aa21.37■■□□□ 1.01
COPS3-212ENST00000539941 ERVV-2B6SEH9 535 aa21.37■■□□□ 1.01
COPS3-212ENST00000539941 INTS3Q68E01 1043 aaKnown RBP21.37■■□□□ 1.01
COPS3-212ENST00000539941 ZNF790Q6PG37 636 aa21.37■■□□□ 1.01
COPS3-212ENST00000539941 NFATC2IPQ8NCF5 419 aa21.36■■□□□ 1.01
COPS3-212ENST00000539941 GIGYF1O75420 1035 aaPredicted RBP21.35■■□□□ 1.01
COPS3-212ENST00000539941 CABP4P57796 275 aa21.35■■□□□ 1.01
COPS3-212ENST00000539941 CDCA7Q9BWT1 371 aaPredicted RBP21.35■■□□□ 1.01
COPS3-212ENST00000539941 THRAP3Q9Y2W1 955 aaKnown RBP21.35■■□□□ 1.01
COPS3-212ENST00000539941 PCDHB15Q9Y5E8 787 aa21.35■■□□□ 1.01
COPS3-212ENST00000539941 ZBTB7BO15156 539 aaPredicted RBP21.34■■□□□ 1.01
COPS3-212ENST00000539941 FLIIQ13045 1269 aa21.34■■□□□ 1.01
COPS3-212ENST00000539941 VPS72Q15906 364 aa21.34■■□□□ 1.01
COPS3-212ENST00000539941 RWDD1Q9H446 243 aaPredicted RBP21.34■■□□□ 1.01
COPS3-212ENST00000539941 USP35Q9P2H5 1018 aa21.34■■□□□ 1.01
COPS3-212ENST00000539941 G2E3Q7L622 706 aa21.33■■□□□ 1
COPS3-212ENST00000539941 IGHDP01880 384 aa21.31■■□□□ 1
COPS3-212ENST00000539941 TTC5Q8N0Z6 440 aa21.31■■□□□ 1
COPS3-212ENST00000539941 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.31■■□□□ 1
COPS3-212ENST00000539941 PXDNLA1KZ92 1463 aa21.31■■□□□ 1
COPS3-212ENST00000539941 SPATA31A1Q5TZJ5 1347 aa21.31■■□□□ 1
COPS3-212ENST00000539941 DEKP35659 375 aaKnown RBP21.31■■□□□ 1
COPS3-212ENST00000539941 CCT4P50991 539 aaKnown RBP21.31■■□□□ 1
COPS3-212ENST00000539941 HDAC1Q13547 482 aaPredicted RBP21.31■■□□□ 1
COPS3-212ENST00000539941 DDX54Q8TDD1 881 aaKnown RBP21.31■■□□□ 1
COPS3-212ENST00000539941 N4BP2Q86UW6 1770 aaPredicted RBP21.3■■□□□ 1
COPS3-212ENST00000539941 EIF2S2P20042 333 aaKnown RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms