RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 UPF3BQ9BZI7 483 aaKnown RBP12.5□□□□□ -0.41
CLIP1-209ENST00000537178 SSBP05455 408 aaKnown RBP eCLIP12.49□□□□□ -0.41
CLIP1-209ENST00000537178 KRT32Q14532 448 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 JAKMIP3Q5VZ66 844 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 ZMYND15Q9H091 742 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 GRPEL1Q9HAV7 217 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 ZNF521Q96K83 1311 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 A2MP01023 1474 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 UBXN4Q92575 508 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 NUP62CLQ9H1M0 184 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 ANKRD50Q9ULJ7 1429 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 KIF2AO00139 706 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-209ENST00000537178 NUP133Q8WUM0 1156 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 SLC4A2P04920 1241 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 CCDC102AQ96A19 550 aa12.49□□□□□ -0.41
CLIP1-209ENST00000537178 SEPT11Q9NVA2 429 aaKnown RBP12.49□□□□□ -0.41
CLIP1-209ENST00000537178 NEBLO76041 1014 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 TATP17735 454 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-209ENST00000537178 EIF5P55010 431 aaKnown RBP12.48□□□□□ -0.41
CLIP1-209ENST00000537178 ABTB2Q8N961 1025 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 ABCC2Q92887 1545 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 WDR7Q9Y4E6 1490 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 FILIP1Q7Z7B0 1213 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 WASF1Q92558 559 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 UBAC1Q9BSL1 405 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 IFT140Q96RY7 1462 aa12.48□□□□□ -0.41
CLIP1-209ENST00000537178 FAM193AP78312 1265 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 MPHOSPH8Q99549 860 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 CRACR2AQ9BSW2 395 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 POTEJP0CG39 1038 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 KIAA1328Q86T90 577 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 TESK2Q96S53 571 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 C1orf115Q9H7X2 142 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 MADDQ8WXG6 1647 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 DYDC1Q8WWB3 177 aa12.47□□□□□ -0.41
CLIP1-209ENST00000537178 IMMTQ16891 758 aaKnown RBP12.46□□□□□ -0.41
CLIP1-209ENST00000537178 CCDC91Q7Z6B0 441 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 CCDC148Q8NFR7 591 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 NLRP1Q9C000 1473 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 UQCRHLA0A096LP55 91 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 UQCRHP07919 91 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 CEP126Q9P2H0 1117 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 ESPNB1AK53 854 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 PPP1R12BO60237 982 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-209ENST00000537178 CDCA7LQ96GN5 454 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 SPHKAPQ2M3C7 1700 aa12.46□□□□□ -0.41
CLIP1-209ENST00000537178 ATP10BO94823 1461 aa12.46□□□□□ -0.42
CLIP1-209ENST00000537178 PPP2R1AP30153 589 aa12.46□□□□□ -0.42
CLIP1-209ENST00000537178 PDRG1Q9NUG6 133 aa12.46□□□□□ -0.42
CLIP1-209ENST00000537178 NOB1Q9ULX3 412 aaKnown RBP12.46□□□□□ -0.42
CLIP1-209ENST00000537178 TRIM21P19474 475 aaKnown RBP12.45□□□□□ -0.42
CLIP1-209ENST00000537178 ZNF397Q8NF99 534 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-209ENST00000537178 SLC26A8Q96RN1 970 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 MPNDQ8N594 471 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 CEP131Q9UPN4 1083 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 TDO2P48775 406 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 TMEM132EQ6IEE7 984 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 CYB5RLQ6IPT4 315 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 TMCO3Q6UWJ1 677 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 SIL1Q9H173 461 aa12.45□□□□□ -0.42
CLIP1-209ENST00000537178 C9orf84Q5VXU9 1444 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 SCAPERQ9BY12 1400 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 CFAP100Q494V2 611 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 STK11IPQ8N1F8 1099 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 MPHOSPH10O00566 681 aaKnown RBP12.44□□□□□ -0.42
CLIP1-209ENST00000537178 ATF7IPQ6VMQ6 1270 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 AEBP2Q6ZN18 517 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-209ENST00000537178 CCDC141Q6ZP82 1450 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 ZNF76P36508 570 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 MAP3K11Q16584 847 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 JAKMIP1Q96N16 626 aaKnown RBP12.44□□□□□ -0.42
CLIP1-209ENST00000537178 DNAI2Q9GZS0 605 aa12.44□□□□□ -0.42
CLIP1-209ENST00000537178 SHTN1A0MZ66 631 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 SFPQP23246 707 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 MCM4P33991 863 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 CABP4P57796 275 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 PLEKHH2Q8IVE3 1493 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 ZSCAN12O43309 604 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 RRP9O43818 475 aaKnown RBP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 SSR1P43307 286 aaKnown RBP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 FKBP4Q02790 459 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 AACSQ86V21 672 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 CCDC97Q96F63 343 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 SPA17Q15506 151 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 MAP9Q49MG5 647 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 SHPRHQ149N8 1683 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 EIF2AK4Q9P2K8 1649 aaKnown RBP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 MAP2K1Q02750 393 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 ZNF530Q6P9A1 599 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-209ENST00000537178 WDR63Q8IWG1 891 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 CEP152O94986 1710 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 IFT172Q9UG01 1749 aa12.43□□□□□ -0.42
CLIP1-209ENST00000537178 CHD1LQ86WJ1 897 aa12.42□□□□□ -0.42
CLIP1-209ENST00000537178 ZNF428Q96B54 188 aa12.42□□□□□ -0.42
CLIP1-209ENST00000537178 PHF23Q9BUL5 403 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-209ENST00000537178 MAGI1Q96QZ7 1491 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-209ENST00000537178 SRGAP3O43295 1099 aa12.42□□□□□ -0.42
CLIP1-209ENST00000537178 ESCO1Q5FWF5 840 aa12.42□□□□□ -0.42
CLIP1-209ENST00000537178 SULT6B1Q6IMI4 303 aa12.42□□□□□ -0.42
CLIP1-209ENST00000537178 VPS36Q86VN1 386 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms