RNA–Protein interactions for RNA: ENST00000536079.5

DDX55-204, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 765 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-204ENST00000536079 NFE2L2Q16236 605 aa23.73■■□□□ 1.39
DDX55-204ENST00000536079 ZNF827Q17R98 1081 aa23.73■■□□□ 1.39
DDX55-204ENST00000536079 PAPPAQ13219 1627 aa23.73■■□□□ 1.39
DDX55-204ENST00000536079 SLC39A6Q13433 755 aa23.72■■□□□ 1.39
DDX55-204ENST00000536079 SLC27A3Q5K4L6 730 aa23.72■■□□□ 1.39
DDX55-204ENST00000536079 SMARCC1Q92922 1105 aaPredicted RBP23.72■■□□□ 1.39
DDX55-204ENST00000536079 MRS2Q9HD23 443 aa23.72■■□□□ 1.39
DDX55-204ENST00000536079 CEMIPQ8WUJ3 1361 aa23.72■■□□□ 1.39
DDX55-204ENST00000536079 PNISRQ8TF01 805 aaKnown RBP23.71■■□□□ 1.39
DDX55-204ENST00000536079 MAPK8IP3Q9UPT6 1336 aa23.7■■□□□ 1.38
DDX55-204ENST00000536079 LOC102724428A0A0B4J2F2 783 aa23.7■■□□□ 1.38
DDX55-204ENST00000536079 SIK1P57059 783 aa23.7■■□□□ 1.38
DDX55-204ENST00000536079 NBPF14Q5TI25 921 aa23.7■■□□□ 1.38
DDX55-204ENST00000536079 RRP7AQ9Y3A4 280 aaKnown RBP23.7■■□□□ 1.38
DDX55-204ENST00000536079 VIRMAQ69YN4 1812 aaKnown RBP23.7■■□□□ 1.38
DDX55-204ENST00000536079 ITPK1Q13572 414 aa23.69■■□□□ 1.38
DDX55-204ENST00000536079 AKT1S1Q96B36 256 aa23.69■■□□□ 1.38
DDX55-204ENST00000536079 RUNDC1Q96C34 613 aa23.69■■□□□ 1.38
DDX55-204ENST00000536079 THUMPD2Q9BTF0 503 aaKnown RBP23.69■■□□□ 1.38
DDX55-204ENST00000536079 PDGFDQ9GZP0 370 aaPredicted RBP23.69■■□□□ 1.38
DDX55-204ENST00000536079 PNNQ9H307 717 aaKnown RBP23.69■■□□□ 1.38
DDX55-204ENST00000536079 TMPOP42166 694 aaKnown RBP23.68■■□□□ 1.38
DDX55-204ENST00000536079 NEFMP07197 916 aa23.67■■□□□ 1.38
DDX55-204ENST00000536079 SLC15A2Q16348 729 aa23.67■■□□□ 1.38
DDX55-204ENST00000536079 RBM42Q9BTD8 480 aaKnown RBP23.67■■□□□ 1.38
DDX55-204ENST00000536079 KCNQ3O43525 872 aa23.66■■□□□ 1.38
DDX55-204ENST00000536079 HTATSF1O43719 755 aaKnown RBP23.66■■□□□ 1.38
DDX55-204ENST00000536079 PTCD1O75127 700 aaKnown RBP23.66■■□□□ 1.38
DDX55-204ENST00000536079 LINC00116Q8NCU8 138 aa23.66■■□□□ 1.38
DDX55-204ENST00000536079 RIPK4P57078 832 aa23.65■■□□□ 1.38
DDX55-204ENST00000536079 RTF1Q92541 710 aaKnown RBP23.65■■□□□ 1.38
DDX55-204ENST00000536079 STK32BQ9NY57 414 aa23.65■■□□□ 1.38
DDX55-204ENST00000536079 DLG5Q8TDM6 1919 aa23.65■■□□□ 1.38
DDX55-204ENST00000536079 SENP3-EIF4A1A0A087X0R7 540 aa23.64■■□□□ 1.37
DDX55-204ENST00000536079 ATP6V1AP38606 617 aa23.64■■□□□ 1.37
DDX55-204ENST00000536079 TEFQ10587 303 aa23.64■■□□□ 1.37
DDX55-204ENST00000536079 NEUROD2Q15784 382 aa23.64■■□□□ 1.37
DDX55-204ENST00000536079 SMIM5Q71RC9 77 aa23.64■■□□□ 1.37
DDX55-204ENST00000536079 AMIGO3Q86WK7 504 aa23.64■■□□□ 1.37
DDX55-204ENST00000536079 SIPA1L3O60292 1781 aaPredicted RBP23.63■■□□□ 1.37
DDX55-204ENST00000536079 KCPQ6ZWJ8 1503 aa23.63■■□□□ 1.37
DDX55-204ENST00000536079 MIS18AQ9NYP9 233 aa23.62■■□□□ 1.37
DDX55-204ENST00000536079 TRIM35Q9UPQ4 493 aa23.62■■□□□ 1.37
DDX55-204ENST00000536079 APAF1O14727 1248 aa23.61■■□□□ 1.37
DDX55-204ENST00000536079 DIEXFQ68CQ4 756 aaKnown RBP23.61■■□□□ 1.37
DDX55-204ENST00000536079 C5P01031 1676 aa23.6■■□□□ 1.37
DDX55-204ENST00000536079 BTBD11A6QL63 1104 aa23.6■■□□□ 1.37
DDX55-204ENST00000536079 TAF1LQ8IZX4 1826 aa23.59■■□□□ 1.37
DDX55-204ENST00000536079 ZNF790Q6PG37 636 aa23.59■■□□□ 1.37
DDX55-204ENST00000536079 ZNF496Q96IT1 587 aaPredicted RBP23.58■■□□□ 1.37
DDX55-204ENST00000536079 PNPLA7Q6ZV29 1317 aa23.58■■□□□ 1.36
DDX55-204ENST00000536079 C4BP0C0L5 1744 aa23.57■■□□□ 1.36
DDX55-204ENST00000536079 DNAJC10Q8IXB1 793 aa23.57■■□□□ 1.36
DDX55-204ENST00000536079 TFCP2L1Q9NZI6 479 aa23.57■■□□□ 1.36
DDX55-204ENST00000536079 TAF7Q15545 349 aaPredicted RBP23.56■■□□□ 1.36
DDX55-204ENST00000536079 FAM9BQ8IZU0 186 aa23.56■■□□□ 1.36
DDX55-204ENST00000536079 TUBGCP6Q96RT7 1819 aa23.55■■□□□ 1.36
DDX55-204ENST00000536079 MIER1Q8N108 512 aa23.55■■□□□ 1.36
DDX55-204ENST00000536079 TJP1Q07157 1748 aa23.55■■□□□ 1.36
DDX55-204ENST00000536079 SRCAPQ6ZRS2 3230 aa23.55■■□□□ 1.36
DDX55-204ENST00000536079 CASZ1Q86V15 1759 aa23.55■■□□□ 1.36
DDX55-204ENST00000536079 UBR2Q8IWV8 1755 aa23.55■■□□□ 1.36
DDX55-204ENST00000536079 ZNF831Q5JPB2 1677 aa23.54■■□□□ 1.36
DDX55-204ENST00000536079 COL23A1Q86Y22 540 aaPredicted RBP23.54■■□□□ 1.36
DDX55-204ENST00000536079 TTC5Q8N0Z6 440 aa23.54■■□□□ 1.36
DDX55-204ENST00000536079 PRAMEF22A3QJZ6 481 aa23.53■■□□□ 1.36
DDX55-204ENST00000536079 ZBTB7AO95365 584 aa23.52■■□□□ 1.36
DDX55-204ENST00000536079 AK7Q96M32 723 aa23.52■■□□□ 1.36
DDX55-204ENST00000536079 HEG1Q9ULI3 1381 aa23.52■■□□□ 1.36
DDX55-204ENST00000536079 COL5A3P25940 1745 aaPredicted RBP23.51■■□□□ 1.35
DDX55-204ENST00000536079 CYP19A1P11511 503 aaPredicted RBP23.51■■□□□ 1.35
DDX55-204ENST00000536079 CRKLP46109 303 aaKnown RBP23.51■■□□□ 1.35
DDX55-204ENST00000536079 LMOD3Q0VAK6 560 aa23.51■■□□□ 1.35
DDX55-204ENST00000536079 INTS5Q6P9B9 1019 aaKnown RBP23.51■■□□□ 1.35
DDX55-204ENST00000536079 GNPATO15228 680 aa23.5■■□□□ 1.35
DDX55-204ENST00000536079 PHF14O94880 888 aa23.5■■□□□ 1.35
DDX55-204ENST00000536079 VSIG10Q8N0Z9 540 aa23.5■■□□□ 1.35
DDX55-204ENST00000536079 CNTNAP4Q9C0A0 1308 aa23.5■■□□□ 1.35
DDX55-204ENST00000536079 CICQ96RK0 1608 aaPredicted RBP23.49■■□□□ 1.35
DDX55-204ENST00000536079 RC3H1Q5TC82 1133 aaKnown RBP23.49■■□□□ 1.35
DDX55-204ENST00000536079 FMNL2Q96PY5 1086 aa23.49■■□□□ 1.35
DDX55-204ENST00000536079 MYH14Q7Z406 1995 aaKnown RBP23.49■■□□□ 1.35
DDX55-204ENST00000536079 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.48■■□□□ 1.35
DDX55-204ENST00000536079 CCER2I3L3R5 266 aa23.48■■□□□ 1.35
DDX55-204ENST00000536079 ATF5Q9Y2D1 282 aaPredicted RBP23.48■■□□□ 1.35
DDX55-204ENST00000536079 QSER1Q2KHR3 1735 aa23.47■■□□□ 1.35
DDX55-204ENST00000536079 UBR3Q6ZT12 1888 aa23.47■■□□□ 1.35
DDX55-204ENST00000536079 EIF4A1P60842 406 aaKnown RBP23.46■■□□□ 1.35
DDX55-204ENST00000536079 KDM3BQ7LBC6 1761 aa23.46■■□□□ 1.35
DDX55-204ENST00000536079 USP16Q9Y5T5 823 aa23.46■■□□□ 1.35
DDX55-204ENST00000536079 CHL1O00533 1208 aa23.45■■□□□ 1.34
DDX55-204ENST00000536079 MSH5O43196 834 aa23.45■■□□□ 1.34
DDX55-204ENST00000536079 RPS6KA4O75676 772 aa23.45■■□□□ 1.34
DDX55-204ENST00000536079 TSPYL4Q9UJ04 414 aa23.45■■□□□ 1.34
DDX55-204ENST00000536079 ZBTB1Q9Y2K1 713 aa23.45■■□□□ 1.34
DDX55-204ENST00000536079 SALL2Q9Y467 1007 aaPredicted RBP23.45■■□□□ 1.34
DDX55-204ENST00000536079 SSFA2P28290 1259 aa23.44■■□□□ 1.34
DDX55-204ENST00000536079 CCDC87Q9NVE4 849 aa23.44■■□□□ 1.34
DDX55-204ENST00000536079 LAS1LQ9Y4W2 734 aaKnown RBP23.44■■□□□ 1.34
DDX55-204ENST00000536079 PTGER2P43116 358 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms