RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 CCDC146Q8IYE0 955 aa17.74■□□□□ 0.43
VPS28-210ENST00000529182 STK32BQ9NY57 414 aa17.74■□□□□ 0.43
VPS28-210ENST00000529182 ADAMTS8Q9UP79 889 aa17.74■□□□□ 0.43
VPS28-210ENST00000529182 MRC1P22897 1456 aa17.74■□□□□ 0.43
VPS28-210ENST00000529182 LOC102724428A0A0B4J2F2 783 aa17.73■□□□□ 0.43
VPS28-210ENST00000529182 NEFMP07197 916 aa17.73■□□□□ 0.43
VPS28-210ENST00000529182 SIK1P57059 783 aa17.73■□□□□ 0.43
VPS28-210ENST00000529182 SLC15A2Q16348 729 aa17.73■□□□□ 0.43
VPS28-210ENST00000529182 MAPK8IP3Q9UPT6 1336 aa17.72■□□□□ 0.43
VPS28-210ENST00000529182 VIRMAQ69YN4 1812 aaKnown RBP17.72■□□□□ 0.43
VPS28-210ENST00000529182 DCTN1Q14203 1278 aa17.72■□□□□ 0.43
VPS28-210ENST00000529182 MCM10Q7L590 875 aa17.72■□□□□ 0.43
VPS28-210ENST00000529182 PNNQ9H307 717 aaKnown RBP17.72■□□□□ 0.43
VPS28-210ENST00000529182 SLC39A6Q13433 755 aa17.71■□□□□ 0.43
VPS28-210ENST00000529182 AKT1S1Q96B36 256 aa17.71■□□□□ 0.43
VPS28-210ENST00000529182 SLC4A9Q96Q91 983 aa17.71■□□□□ 0.43
VPS28-210ENST00000529182 RBM42Q9BTD8 480 aaKnown RBP17.71■□□□□ 0.43
VPS28-210ENST00000529182 PDGFDQ9GZP0 370 aaPredicted RBP17.71■□□□□ 0.43
VPS28-210ENST00000529182 CEMIPQ8WUJ3 1361 aa17.7■□□□□ 0.42
VPS28-210ENST00000529182 PTCD1O75127 700 aaKnown RBP17.7■□□□□ 0.42
VPS28-210ENST00000529182 ATP6V1AP38606 617 aa17.7■□□□□ 0.42
VPS28-210ENST00000529182 TEFQ10587 303 aa17.7■□□□□ 0.42
VPS28-210ENST00000529182 ITPK1Q13572 414 aa17.7■□□□□ 0.42
VPS28-210ENST00000529182 NFE2L2Q16236 605 aa17.7■□□□□ 0.42
VPS28-210ENST00000529182 RTF1Q92541 710 aaKnown RBP17.7■□□□□ 0.42
VPS28-210ENST00000529182 LINC00116Q8NCU8 138 aa17.69■□□□□ 0.42
VPS28-210ENST00000529182 MRS2Q9HD23 443 aa17.69■□□□□ 0.42
VPS28-210ENST00000529182 C5P01031 1676 aa17.68■□□□□ 0.42
VPS28-210ENST00000529182 RRP7AQ9Y3A4 280 aaKnown RBP17.68■□□□□ 0.42
VPS28-210ENST00000529182 HTATSF1O43719 755 aaKnown RBP17.67■□□□□ 0.42
VPS28-210ENST00000529182 RUNDC1Q96C34 613 aa17.67■□□□□ 0.42
VPS28-210ENST00000529182 THUMPD2Q9BTF0 503 aaKnown RBP17.67■□□□□ 0.42
VPS28-210ENST00000529182 DLG5Q8TDM6 1919 aa17.66■□□□□ 0.42
VPS28-210ENST00000529182 TAF1LQ8IZX4 1826 aa17.66■□□□□ 0.42
VPS28-210ENST00000529182 TMPOP42166 694 aaKnown RBP17.66■□□□□ 0.42
VPS28-210ENST00000529182 NEUROD2Q15784 382 aa17.66■□□□□ 0.42
VPS28-210ENST00000529182 TFCP2L1Q9NZI6 479 aa17.66■□□□□ 0.42
VPS28-210ENST00000529182 C4BP0C0L5 1744 aa17.65■□□□□ 0.42
VPS28-210ENST00000529182 RIPK4P57078 832 aa17.65■□□□□ 0.42
VPS28-210ENST00000529182 SMIM5Q71RC9 77 aa17.65■□□□□ 0.42
VPS28-210ENST00000529182 KCPQ6ZWJ8 1503 aa17.65■□□□□ 0.42
VPS28-210ENST00000529182 SIPA1L3O60292 1781 aaPredicted RBP17.65■□□□□ 0.42
VPS28-210ENST00000529182 PNPLA7Q6ZV29 1317 aa17.65■□□□□ 0.42
VPS28-210ENST00000529182 BTBD11A6QL63 1104 aa17.64■□□□□ 0.41
VPS28-210ENST00000529182 KCNQ3O43525 872 aa17.64■□□□□ 0.41
VPS28-210ENST00000529182 AMIGO3Q86WK7 504 aa17.64■□□□□ 0.41
VPS28-210ENST00000529182 PNISRQ8TF01 805 aaKnown RBP17.64■□□□□ 0.41
VPS28-210ENST00000529182 CASZ1Q86V15 1759 aa17.63■□□□□ 0.41
VPS28-210ENST00000529182 TUBGCP6Q96RT7 1819 aa17.63■□□□□ 0.41
VPS28-210ENST00000529182 ZBTB7AO95365 584 aa17.63■□□□□ 0.41
VPS28-210ENST00000529182 ZNF790Q6PG37 636 aa17.63■□□□□ 0.41
VPS28-210ENST00000529182 TTC5Q8N0Z6 440 aa17.63■□□□□ 0.41
VPS28-210ENST00000529182 AK7Q96M32 723 aa17.63■□□□□ 0.41
VPS28-210ENST00000529182 DNAJC10Q8IXB1 793 aa17.62■□□□□ 0.41
VPS28-210ENST00000529182 MIS18AQ9NYP9 233 aa17.62■□□□□ 0.41
VPS28-210ENST00000529182 TJP1Q07157 1748 aa17.61■□□□□ 0.41
VPS28-210ENST00000529182 SENP3-EIF4A1A0A087X0R7 540 aa17.61■□□□□ 0.41
VPS28-210ENST00000529182 APAF1O14727 1248 aa17.61■□□□□ 0.41
VPS28-210ENST00000529182 PHF14O94880 888 aa17.61■□□□□ 0.41
VPS28-210ENST00000529182 COL23A1Q86Y22 540 aaPredicted RBP17.61■□□□□ 0.41
VPS28-210ENST00000529182 ZNF496Q96IT1 587 aaPredicted RBP17.61■□□□□ 0.41
VPS28-210ENST00000529182 ZNF831Q5JPB2 1677 aa17.61■□□□□ 0.41
VPS28-210ENST00000529182 GNPATO15228 680 aa17.6■□□□□ 0.41
VPS28-210ENST00000529182 TAF7Q15545 349 aaPredicted RBP17.6■□□□□ 0.41
VPS28-210ENST00000529182 ATF5Q9Y2D1 282 aaPredicted RBP17.6■□□□□ 0.41
VPS28-210ENST00000529182 UBR2Q8IWV8 1755 aa17.6■□□□□ 0.41
VPS28-210ENST00000529182 COL5A3P25940 1745 aaPredicted RBP17.59■□□□□ 0.41
VPS28-210ENST00000529182 MSH5O43196 834 aa17.59■□□□□ 0.41
VPS28-210ENST00000529182 TRIM35Q9UPQ4 493 aa17.59■□□□□ 0.41
VPS28-210ENST00000529182 QSER1Q2KHR3 1735 aa17.58■□□□□ 0.41
VPS28-210ENST00000529182 CNTNAP4Q9C0A0 1308 aa17.58■□□□□ 0.4
VPS28-210ENST00000529182 HMGB2P26583 209 aaKnown RBP17.58■□□□□ 0.4
VPS28-210ENST00000529182 CRKLP46109 303 aaKnown RBP17.58■□□□□ 0.4
VPS28-210ENST00000529182 LMOD3Q0VAK6 560 aa17.58■□□□□ 0.4
VPS28-210ENST00000529182 HEG1Q9ULI3 1381 aa17.57■□□□□ 0.4
VPS28-210ENST00000529182 UBR3Q6ZT12 1888 aa17.57■□□□□ 0.4
VPS28-210ENST00000529182 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.57■□□□□ 0.4
VPS28-210ENST00000529182 FAM9BQ8IZU0 186 aa17.57■□□□□ 0.4
VPS28-210ENST00000529182 FMNL2Q96PY5 1086 aa17.57■□□□□ 0.4
VPS28-210ENST00000529182 SPON1Q9HCB6 807 aa17.57■□□□□ 0.4
VPS28-210ENST00000529182 CICQ96RK0 1608 aaPredicted RBP17.57■□□□□ 0.4
VPS28-210ENST00000529182 CYP19A1P11511 503 aaPredicted RBP17.56■□□□□ 0.4
VPS28-210ENST00000529182 RC3H1Q5TC82 1133 aaKnown RBP17.56■□□□□ 0.4
VPS28-210ENST00000529182 DIEXFQ68CQ4 756 aaKnown RBP17.56■□□□□ 0.4
VPS28-210ENST00000529182 VSIG10Q8N0Z9 540 aa17.56■□□□□ 0.4
VPS28-210ENST00000529182 MTFR1LQ9H019 292 aa17.56■□□□□ 0.4
VPS28-210ENST00000529182 MYH14Q7Z406 1995 aaKnown RBP17.56■□□□□ 0.4
VPS28-210ENST00000529182 LRP5O75197 1615 aa17.55■□□□□ 0.4
VPS28-210ENST00000529182 PRAMEF22A3QJZ6 481 aa17.55■□□□□ 0.4
VPS28-210ENST00000529182 SSFA2P28290 1259 aa17.55■□□□□ 0.4
VPS28-210ENST00000529182 INTS5Q6P9B9 1019 aaKnown RBP17.55■□□□□ 0.4
VPS28-210ENST00000529182 RTCBQ9Y3I0 505 aaKnown RBP17.55■□□□□ 0.4
VPS28-210ENST00000529182 RPS6KA4O75676 772 aa17.54■□□□□ 0.4
VPS28-210ENST00000529182 MSL1Q68DK7 614 aa17.54■□□□□ 0.4
VPS28-210ENST00000529182 FLAD1Q8NFF5 587 aa17.54■□□□□ 0.4
VPS28-210ENST00000529182 CCDC87Q9NVE4 849 aa17.54■□□□□ 0.4
VPS28-210ENST00000529182 PTGER2P43116 358 aa17.53■□□□□ 0.4
VPS28-210ENST00000529182 SLC16A10Q8TF71 515 aa17.53■□□□□ 0.4
VPS28-210ENST00000529182 TSPYL4Q9UJ04 414 aa17.53■□□□□ 0.4
VPS28-210ENST00000529182 ZBTB1Q9Y2K1 713 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms