RNA–Protein interactions for RNA: ENST00000528999.5

PUF60-213, Transcript of poly(U) binding splicing factor 60, human

TSL 3

Gene PUF60, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUF60-213	ENST00000528999	LTN1	O94822	1766 aa		13.26	□□□□□ -0.29
PUF60-213	ENST00000528999	FKBP5	Q13451	457 aa	Predicted RBP	13.26	□□□□□ -0.29
PUF60-213	ENST00000528999	ORAI2	Q96SN7	254 aa		13.26	□□□□□ -0.29
PUF60-213	ENST00000528999	ATF3	P18847	181 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	TEF	Q10587	303 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	C1orf141	Q5JVX7	400 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	HDGFL1	Q5TGJ6	251 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	SLC4A10	Q6U841	1118 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	TBC1D9	Q6ZT07	1266 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	HSCB	Q8IWL3	235 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	SRCIN1	Q9C0H9	1055 aa		13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
PUF60-213	ENST00000528999	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.24	□□□□□ -0.29
PUF60-213	ENST00000528999	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.24	□□□□□ -0.29
PUF60-213	ENST00000528999	ANKRD24	Q8TF21	1146 aa		13.24	□□□□□ -0.29
PUF60-213	ENST00000528999	CHMP5	Q9NZZ3	219 aa		13.24	□□□□□ -0.29
PUF60-213	ENST00000528999	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.23	□□□□□ -0.29
PUF60-213	ENST00000528999	RNMT	O43148	476 aa	Known RBP	13.23	□□□□□ -0.29
PUF60-213	ENST00000528999	RAB11FIP3	O75154	756 aa		13.23	□□□□□ -0.29
PUF60-213	ENST00000528999	CADPS2	Q86UW7	1296 aa		13.23	□□□□□ -0.29
PUF60-213	ENST00000528999	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.23	□□□□□ -0.29
PUF60-213	ENST00000528999	LMO7	Q8WWI1	1683 aa		13.23	□□□□□ -0.29
PUF60-213	ENST00000528999	ABCC6	O95255	1503 aa		13.23	□□□□□ -0.29
PUF60-213	ENST00000528999	AOX1	Q06278	1338 aa		13.22	□□□□□ -0.29
PUF60-213	ENST00000528999	BTBD11	A6QL63	1104 aa		13.22	□□□□□ -0.29
PUF60-213	ENST00000528999		F6X3S4	739 aa		13.22	□□□□□ -0.29
PUF60-213	ENST00000528999	USHBP1	Q8N6Y0	703 aa		13.22	□□□□□ -0.29
PUF60-213	ENST00000528999	DBF4	Q9UBU7	674 aa	Predicted RBP	13.22	□□□□□ -0.29
PUF60-213	ENST00000528999	CAMTA1	Q9Y6Y1	1673 aa		13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	HEG1	Q9ULI3	1381 aa		13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	EPB41L2	O43491	1005 aa	Known RBP	13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	GSPT1	P15170	499 aa	Known RBP	13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	GSE1	Q14687	1217 aa		13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	RBM33	Q96EV2	1170 aa	Known RBP	13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	LRRCC1	Q9C099	1032 aa		13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	USP44	Q9H0E7	712 aa		13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	LGR6	Q9HBX8	967 aa		13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	STAP2	Q9UGK3	403 aa		13.21	□□□□□ -0.29
PUF60-213	ENST00000528999	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	NPHP3	Q7Z494	1330 aa		13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	ALDH1L1	O75891	902 aa		13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	REC8	O95072	547 aa		13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	UBTFL1	P0CB47	393 aa	Predicted RBP	13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	HSP90AB4P	Q58FF6	505 aa		13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	SSH3	Q8TE77	659 aa		13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	FAM208A	Q9UK61	1670 aa	Known RBP	13.2	□□□□□ -0.3
PUF60-213	ENST00000528999	FRAT2	O75474	233 aa	Predicted RBP	13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	PDE1A	P54750	535 aa		13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	RABEP1	Q15276	862 aa		13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	KIF2C	Q99661	725 aa		13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	HYPK	Q9NX55	129 aa		13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	SPG7	Q9UQ90	795 aa		13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	KDM3B	Q7LBC6	1761 aa		13.19	□□□□□ -0.3
PUF60-213	ENST00000528999	GIGYF1	O75420	1035 aa	Predicted RBP	13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	SDS	P20132	328 aa		13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	PTMS	P20962	102 aa		13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	POLA2	Q14181	598 aa		13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	DNAAF4	Q8WXU2	420 aa		13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	LRRC59	Q96AG4	307 aa	Known RBP	13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	USP26	Q9BXU7	913 aa		13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	TMEM94	Q12767	1356 aa		13.18	□□□□□ -0.3
PUF60-213	ENST00000528999	ERBB3	P21860	1342 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	SALL3	Q9BXA9	1300 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	DDIT3	P35638	169 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	BEND3	Q5T5X7	828 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	LMOD2	Q6P5Q4	547 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	RAPGEF4	Q8WZA2	1011 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	AXIN2	Q9Y2T1	843 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	ALS2	Q96Q42	1657 aa		13.17	□□□□□ -0.3
PUF60-213	ENST00000528999	ADAMTS7	Q9UKP4	1686 aa		13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	ERC2	O15083	957 aa		13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	DDX58	O95786	925 aa	Known RBP	13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	HSP90AB1	P08238	724 aa	Known RBP	13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	TAT	P17735	454 aa	Predicted RBP	13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	MTX1	Q13505	466 aa		13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	KSR2	Q6VAB6	950 aa		13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	MPRIP	Q6WCQ1	1025 aa		13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	SLK	Q9H2G2	1235 aa	Predicted RBP	13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	LRRFIP2	Q9Y608	721 aa	Known RBP	13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	CPD	O75976	1380 aa		13.16	□□□□□ -0.3
PUF60-213	ENST00000528999	ZBTB7C	A1YPR0	619 aa		13.15	□□□□□ -0.3
PUF60-213	ENST00000528999		K7ELQ4	463 aa	Predicted RBP	13.15	□□□□□ -0.3
PUF60-213	ENST00000528999	EIF2S2	P20042	333 aa	Known RBP	13.15	□□□□□ -0.3
PUF60-213	ENST00000528999	PHAX	Q9H814	394 aa	Known RBP	13.15	□□□□□ -0.3
PUF60-213	ENST00000528999	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
PUF60-213	ENST00000528999	SMARCA5	O60264	1052 aa	Predicted RBP	13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	MX1	P20591	662 aa		13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	XPC	Q01831	940 aa	Predicted RBP	13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	IFNL2	Q8IZJ0	200 aa		13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	NECTIN2	Q92692	538 aa		13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	KIF1BP	Q96EK5	621 aa		13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	IL17RA	Q96F46	866 aa		13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	CHPF2	Q9P2E5	772 aa		13.14	□□□□□ -0.31
PUF60-213	ENST00000528999	SPATA31A3	Q5VYP0	1347 aa		13.13	□□□□□ -0.31
PUF60-213	ENST00000528999	PNMA6E	A0A0J9YXQ4	647 aa		13.13	□□□□□ -0.31
PUF60-213	ENST00000528999	PI4KAP2	A4QPH2	592 aa		13.13	□□□□□ -0.31
PUF60-213	ENST00000528999	MCM4	P33991	863 aa		13.13	□□□□□ -0.31
PUF60-213	ENST00000528999	PI4KAP1	Q8N8J0	262 aa		13.13	□□□□□ -0.31
PUF60-213	ENST00000528999	TNS3	Q68CZ2	1445 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms