RNA–Protein interactions for RNA: ENST00000526433.1

SSSCA1-202, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3

Gene SSSCA1, Length 739 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-202ENST00000526433 NEFMP07197 916 aa21.56■■□□□ 1.04
SSSCA1-202ENST00000526433 HMGB2P26583 209 aaKnown RBP21.56■■□□□ 1.04
SSSCA1-202ENST00000526433 MAP3K5Q99683 1374 aa21.56■■□□□ 1.04
SSSCA1-202ENST00000526433 PLEKHF1Q96S99 279 aa21.55■■□□□ 1.04
SSSCA1-202ENST00000526433 RBM42Q9BTD8 480 aaKnown RBP21.55■■□□□ 1.04
SSSCA1-202ENST00000526433 PDGFDQ9GZP0 370 aaPredicted RBP21.55■■□□□ 1.04
SSSCA1-202ENST00000526433 ATP6V1AP38606 617 aa21.54■■□□□ 1.04
SSSCA1-202ENST00000526433 TFCP2L1Q9NZI6 479 aa21.53■■□□□ 1.04
SSSCA1-202ENST00000526433 ANP32CO43423 234 aa21.52■■□□□ 1.04
SSSCA1-202ENST00000526433 SLC4A9Q96Q91 983 aa21.52■■□□□ 1.04
SSSCA1-202ENST00000526433 ADAMTS7Q9UKP4 1686 aa21.52■■□□□ 1.04
SSSCA1-202ENST00000526433 TAF1LQ8IZX4 1826 aa21.52■■□□□ 1.04
SSSCA1-202ENST00000526433 PTCD1O75127 700 aaKnown RBP21.51■■□□□ 1.03
SSSCA1-202ENST00000526433 TEFQ10587 303 aa21.51■■□□□ 1.03
SSSCA1-202ENST00000526433 ITPK1Q13572 414 aa21.51■■□□□ 1.03
SSSCA1-202ENST00000526433 WDR43Q15061 677 aaKnown RBP eCLIP21.51■■□□□ 1.03
SSSCA1-202ENST00000526433 RTF1Q92541 710 aaKnown RBP21.51■■□□□ 1.03
SSSCA1-202ENST00000526433 SLC39A6Q13433 755 aa21.5■■□□□ 1.03
SSSCA1-202ENST00000526433 LINC00116Q8NCU8 138 aa21.5■■□□□ 1.03
SSSCA1-202ENST00000526433 MAPK8IP3Q9UPT6 1336 aa21.5■■□□□ 1.03
SSSCA1-202ENST00000526433 C5P01031 1676 aa21.5■■□□□ 1.03
SSSCA1-202ENST00000526433 HTATSF1O43719 755 aaKnown RBP21.49■■□□□ 1.03
SSSCA1-202ENST00000526433 NFE2L2Q16236 605 aa21.49■■□□□ 1.03
SSSCA1-202ENST00000526433 ADAMTS8Q9UP79 889 aa21.49■■□□□ 1.03
SSSCA1-202ENST00000526433 MRC1P22897 1456 aa21.49■■□□□ 1.03
SSSCA1-202ENST00000526433 MCM10Q7L590 875 aa21.48■■□□□ 1.03
SSSCA1-202ENST00000526433 SRCAPQ6ZRS2 3230 aa21.48■■□□□ 1.03
SSSCA1-202ENST00000526433 PNPLA7Q6ZV29 1317 aa21.48■■□□□ 1.03
SSSCA1-202ENST00000526433 CEMIPQ8WUJ3 1361 aa21.48■■□□□ 1.03
SSSCA1-202ENST00000526433 CASZ1Q86V15 1759 aa21.47■■□□□ 1.03
SSSCA1-202ENST00000526433 ZBTB7AO95365 584 aa21.47■■□□□ 1.03
SSSCA1-202ENST00000526433 DCTN1Q14203 1278 aa21.47■■□□□ 1.03
SSSCA1-202ENST00000526433 SPON1Q9HCB6 807 aa21.47■■□□□ 1.03
SSSCA1-202ENST00000526433 CCDC184Q52MB2 194 aa21.46■■□□□ 1.03
SSSCA1-202ENST00000526433 AK7Q96M32 723 aa21.46■■□□□ 1.03
SSSCA1-202ENST00000526433 ATF5Q9Y2D1 282 aaPredicted RBP21.46■■□□□ 1.03
SSSCA1-202ENST00000526433 DLG5Q8TDM6 1919 aa21.45■■□□□ 1.02
SSSCA1-202ENST00000526433 COL23A1Q86Y22 540 aaPredicted RBP21.45■■□□□ 1.02
SSSCA1-202ENST00000526433 CCDC146Q8IYE0 955 aa21.45■■□□□ 1.02
SSSCA1-202ENST00000526433 C4BP0C0L5 1744 aa21.45■■□□□ 1.02
SSSCA1-202ENST00000526433 TUBGCP6Q96RT7 1819 aa21.45■■□□□ 1.02
SSSCA1-202ENST00000526433 QSER1Q2KHR3 1735 aa21.44■■□□□ 1.02
SSSCA1-202ENST00000526433 ZNF831Q5JPB2 1677 aa21.44■■□□□ 1.02
SSSCA1-202ENST00000526433 BTBD11A6QL63 1104 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 MSH5O43196 834 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 TTC5Q8N0Z6 440 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 FLAD1Q8NFF5 587 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 SLC16A10Q8TF71 515 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 RUNDC1Q96C34 613 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 MTFR1LQ9H019 292 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 LRP5O75197 1615 aa21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 SIPA1L3O60292 1781 aaPredicted RBP21.43■■□□□ 1.02
SSSCA1-202ENST00000526433 TMPOP42166 694 aaKnown RBP21.42■■□□□ 1.02
SSSCA1-202ENST00000526433 RIPK4P57078 832 aa21.42■■□□□ 1.02
SSSCA1-202ENST00000526433 RC3H1Q5TC82 1133 aaKnown RBP21.42■■□□□ 1.02
SSSCA1-202ENST00000526433 ZNF790Q6PG37 636 aa21.42■■□□□ 1.02
SSSCA1-202ENST00000526433 SMIM5Q71RC9 77 aa21.42■■□□□ 1.02
SSSCA1-202ENST00000526433 AMIGO3Q86WK7 504 aa21.42■■□□□ 1.02
SSSCA1-202ENST00000526433 GNPATO15228 680 aa21.41■■□□□ 1.02
SSSCA1-202ENST00000526433 KCNQ3O43525 872 aa21.4■■□□□ 1.02
SSSCA1-202ENST00000526433 TAF7Q15545 349 aaPredicted RBP21.4■■□□□ 1.02
SSSCA1-202ENST00000526433 DNAJC10Q8IXB1 793 aa21.4■■□□□ 1.02
SSSCA1-202ENST00000526433 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.39■■□□□ 1.01
SSSCA1-202ENST00000526433 PHF14O94880 888 aa21.39■■□□□ 1.01
SSSCA1-202ENST00000526433 VSIG10Q8N0Z9 540 aa21.39■■□□□ 1.01
SSSCA1-202ENST00000526433 ZNF496Q96IT1 587 aaPredicted RBP21.39■■□□□ 1.01
SSSCA1-202ENST00000526433 RRP7AQ9Y3A4 280 aaKnown RBP21.39■■□□□ 1.01
SSSCA1-202ENST00000526433 KCPQ6ZWJ8 1503 aa21.39■■□□□ 1.01
SSSCA1-202ENST00000526433 UBR3Q6ZT12 1888 aa21.39■■□□□ 1.01
SSSCA1-202ENST00000526433 CNTNAP4Q9C0A0 1308 aa21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 MYH14Q7Z406 1995 aaKnown RBP21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 SSFA2P28290 1259 aa21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 PTGER2P43116 358 aa21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 NEUROD2Q15784 382 aa21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 THUMPD2Q9BTF0 503 aaKnown RBP21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 MRS2Q9HD23 443 aa21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 RTCBQ9Y3I0 505 aaKnown RBP21.38■■□□□ 1.01
SSSCA1-202ENST00000526433 RPS6KA4O75676 772 aa21.37■■□□□ 1.01
SSSCA1-202ENST00000526433 CRKLP46109 303 aaKnown RBP21.37■■□□□ 1.01
SSSCA1-202ENST00000526433 FMNL2Q96PY5 1086 aa21.37■■□□□ 1.01
SSSCA1-202ENST00000526433 MIS18AQ9NYP9 233 aa21.37■■□□□ 1.01
SSSCA1-202ENST00000526433 COL5A3P25940 1745 aaPredicted RBP21.37■■□□□ 1.01
SSSCA1-202ENST00000526433 UBR2Q8IWV8 1755 aa21.36■■□□□ 1.01
SSSCA1-202ENST00000526433 TJP1Q07157 1748 aa21.36■■□□□ 1.01
SSSCA1-202ENST00000526433 CYP19A1P11511 503 aaPredicted RBP21.36■■□□□ 1.01
SSSCA1-202ENST00000526433 TRAPPC3LQ5T215 181 aa21.36■■□□□ 1.01
SSSCA1-202ENST00000526433 PNISRQ8TF01 805 aaKnown RBP21.36■■□□□ 1.01
SSSCA1-202ENST00000526433 PPP1R1BQ9UD71 204 aaPredicted RBP21.36■■□□□ 1.01
SSSCA1-202ENST00000526433 INTS5Q6P9B9 1019 aaKnown RBP21.35■■□□□ 1.01
SSSCA1-202ENST00000526433 SGIP1Q9BQI5 828 aa21.35■■□□□ 1.01
SSSCA1-202ENST00000526433 HEG1Q9ULI3 1381 aa21.35■■□□□ 1.01
SSSCA1-202ENST00000526433 LMOD3Q0VAK6 560 aa21.34■■□□□ 1.01
SSSCA1-202ENST00000526433 TEX13AQ9BXU3 409 aaPredicted RBP21.34■■□□□ 1.01
SSSCA1-202ENST00000526433 CCDC87Q9NVE4 849 aa21.34■■□□□ 1.01
SSSCA1-202ENST00000526433 CICQ96RK0 1608 aaPredicted RBP21.33■■□□□ 1
SSSCA1-202ENST00000526433 APAF1O14727 1248 aa21.32■■□□□ 1
SSSCA1-202ENST00000526433 STARD3NLO95772 234 aa21.32■■□□□ 1
SSSCA1-202ENST00000526433 MSL1Q68DK7 614 aa21.32■■□□□ 1
SSSCA1-202ENST00000526433 ARHGEF1Q92888 912 aaKnown RBP21.32■■□□□ 1
SSSCA1-202ENST00000526433 TRIM35Q9UPQ4 493 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms