RNA–Protein interactions for RNA: ENST00000526433.1

SSSCA1-202, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3

Gene SSSCA1, Length 739 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-202ENST00000526433 NISCHQ9Y2I1 1504 aa39.29■■■■□ 3.88
SSSCA1-202ENST00000526433 CCDC180Q9P1Z9 1646 aa34.86■■■■□ 3.17
SSSCA1-202ENST00000526433 ABCC9O60706 1549 aa34.2■■■■□ 3.07
SSSCA1-202ENST00000526433 DCAF8L2P0C7V8 631 aa32.97■■■□□ 2.87
SSSCA1-202ENST00000526433 RB1CC1Q8TDY2 1594 aa32.86■■■□□ 2.85
SSSCA1-202ENST00000526433 NACADO15069 1562 aa32.82■■■□□ 2.84
SSSCA1-202ENST00000526433 ZCCHC6Q5VYS8 1495 aaKnown RBP32.68■■■□□ 2.82
SSSCA1-202ENST00000526433 MYO15BQ96JP2 1530 aa32.6■■■□□ 2.81
SSSCA1-202ENST00000526433 DCAF1Q9Y4B6 1507 aa32.46■■■□□ 2.79
SSSCA1-202ENST00000526433 UNC13AQ9UPW8 1703 aa32.12■■■□□ 2.73
SSSCA1-202ENST00000526433 PABPN1Q86U42 306 aaKnown RBP eCLIP32.03■■■□□ 2.72
SSSCA1-202ENST00000526433 BICRAQ9NZM4 1560 aa31.87■■■□□ 2.69
SSSCA1-202ENST00000526433 SCRIBQ14160 1630 aa31.85■■■□□ 2.69
SSSCA1-202ENST00000526433 DNAJC5BQ9UF47 199 aa31.48■■■□□ 2.63
SSSCA1-202ENST00000526433 SHROOM4Q9ULL8 1493 aa31.46■■■□□ 2.63
SSSCA1-202ENST00000526433 EIF4G1Q04637 1599 aaKnown RBP31.02■■■□□ 2.56
SSSCA1-202ENST00000526433 CC2D2AQ9P2K1 1620 aa30.91■■■□□ 2.54
SSSCA1-202ENST00000526433 CECR2Q9BXF3 1484 aa30.72■■■□□ 2.51
SSSCA1-202ENST00000526433 SMARCA4P51532 1647 aa30.46■■■□□ 2.47
SSSCA1-202ENST00000526433 BAZ1AQ9NRL2 1556 aaPredicted RBP30.42■■■□□ 2.46
SSSCA1-202ENST00000526433 ATAD2BQ9ULI0 1458 aa30.32■■■□□ 2.44
SSSCA1-202ENST00000526433 NCAPD3P42695 1498 aa30.31■■■□□ 2.44
SSSCA1-202ENST00000526433 MROH2BQ7Z745 1585 aa30.28■■■□□ 2.44
SSSCA1-202ENST00000526433 SMARCA2P51531 1590 aa30.26■■■□□ 2.43
SSSCA1-202ENST00000526433 PEG3Q9GZU2 1588 aa30.14■■■□□ 2.42
SSSCA1-202ENST00000526433 HMGXB3Q12766 1538 aa30.11■■■□□ 2.41
SSSCA1-202ENST00000526433 BAZ1BQ9UIG0 1483 aaKnown RBP30.06■■■□□ 2.4
SSSCA1-202ENST00000526433 WIZO95785 1651 aa29.96■■■□□ 2.39
SSSCA1-202ENST00000526433 RSF1Q96T23 1441 aaPredicted RBP29.96■■■□□ 2.39
SSSCA1-202ENST00000526433 TOP2AP11388 1531 aaKnown RBP29.61■■■□□ 2.33
SSSCA1-202ENST00000526433 NESP48681 1621 aa29.6■■■□□ 2.33
SSSCA1-202ENST00000526433 LAMC3Q9Y6N6 1575 aa29.47■■■□□ 2.31
SSSCA1-202ENST00000526433 ERCC6Q03468 1493 aa29.46■■■□□ 2.31
SSSCA1-202ENST00000526433 CADPSQ9ULU8 1353 aa29.45■■■□□ 2.31
SSSCA1-202ENST00000526433 CCDC88BA6NC98 1476 aa29.32■■■□□ 2.28
SSSCA1-202ENST00000526433 PDS5BQ9NTI5 1447 aa29.32■■■□□ 2.28
SSSCA1-202ENST00000526433 SUPT5HO00267 1087 aaKnown RBP29.29■■■□□ 2.28
SSSCA1-202ENST00000526433 CFTRP13569 1480 aa29.24■■■□□ 2.27
SSSCA1-202ENST00000526433 KIF21AQ7Z4S6 1674 aa29.21■■■□□ 2.27
SSSCA1-202ENST00000526433 CUX2O14529 1486 aa29.12■■■□□ 2.25
SSSCA1-202ENST00000526433 FANCD2Q9BXW9 1451 aa29.09■■■□□ 2.25
SSSCA1-202ENST00000526433 THOC2Q8NI27 1593 aaKnown RBP29.08■■■□□ 2.25
SSSCA1-202ENST00000526433 CEP164Q9UPV0 1460 aa29.03■■■□□ 2.24
SSSCA1-202ENST00000526433 MRC2Q9UBG0 1479 aa28.99■■■□□ 2.23
SSSCA1-202ENST00000526433 PRDM2Q13029 1718 aa28.97■■■□□ 2.23
SSSCA1-202ENST00000526433 WDR62O43379 1518 aa28.87■■■□□ 2.21
SSSCA1-202ENST00000526433 URB2Q14146 1524 aaKnown RBP28.79■■■□□ 2.2
SSSCA1-202ENST00000526433 ABCC8Q09428 1581 aa28.62■■■□□ 2.17
SSSCA1-202ENST00000526433 TOPBP1Q92547 1522 aa28.62■■■□□ 2.17
SSSCA1-202ENST00000526433 DNMBPQ6XZF7 1577 aa28.56■■■□□ 2.16
SSSCA1-202ENST00000526433 IFT140Q96RY7 1462 aa28.43■■■□□ 2.14
SSSCA1-202ENST00000526433 CUX1P39880 1505 aa28.4■■■□□ 2.14
SSSCA1-202ENST00000526433 POLA1P09884 1462 aaPredicted RBP28.37■■■□□ 2.13
SSSCA1-202ENST00000526433 DNAJC5Q9H3Z4 198 aa28.34■■■□□ 2.13
SSSCA1-202ENST00000526433 ZNF608Q9ULD9 1512 aaPredicted RBP28.33■■■□□ 2.13
SSSCA1-202ENST00000526433 SOGA1O94964 1423 aa28.31■■■□□ 2.12
SSSCA1-202ENST00000526433 FGD5Q6ZNL6 1462 aa28.3■■■□□ 2.12
SSSCA1-202ENST00000526433 TARBP1Q13395 1621 aaKnown RBP28.29■■■□□ 2.12
SSSCA1-202ENST00000526433 RAD54L2Q9Y4B4 1467 aa28.29■■■□□ 2.12
SSSCA1-202ENST00000526433 WRNQ14191 1432 aaPredicted RBP eCLIP28.23■■■□□ 2.11
SSSCA1-202ENST00000526433 AQRO60306 1485 aaKnown RBP eCLIP28.2■■■□□ 2.14e-6■■■■■ 31
SSSCA1-202ENST00000526433 EIF4G3O43432 1585 aaKnown RBP28.16■■■□□ 2.1
SSSCA1-202ENST00000526433 TDRD9Q8NDG6 1382 aaKnown RBP28.15■■■□□ 2.1
SSSCA1-202ENST00000526433 TOP2BQ02880 1626 aa28.14■■■□□ 2.09
SSSCA1-202ENST00000526433 SYNJ1O43426 1573 aa28.13■■■□□ 2.09
SSSCA1-202ENST00000526433 BIVM-ERCC5R4GMW8 1640 aa28.12■■■□□ 2.09
SSSCA1-202ENST00000526433 OSCARQ8IYS5 282 aa28.03■■■□□ 2.08
SSSCA1-202ENST00000526433 ABCA10Q8WWZ4 1543 aa28.02■■■□□ 2.08
SSSCA1-202ENST00000526433 WDR97A6NE52 1622 aa28.02■■■□□ 2.08
SSSCA1-202ENST00000526433 GAPVD1Q14C86 1478 aa27.95■■■□□ 2.06
SSSCA1-202ENST00000526433 GRIN2BQ13224 1484 aa27.93■■■□□ 2.06
SSSCA1-202ENST00000526433 FBLN2P98095 1184 aa27.91■■■□□ 2.06
SSSCA1-202ENST00000526433 SNAPC4Q5SXM2 1469 aa27.89■■■□□ 2.05
SSSCA1-202ENST00000526433 ABCA5Q8WWZ7 1642 aa27.88■■■□□ 2.05
SSSCA1-202ENST00000526433 PBRM1Q86U86 1689 aa27.84■■■□□ 2.05
SSSCA1-202ENST00000526433 MAGI1Q96QZ7 1491 aaPredicted RBP27.83■■■□□ 2.05
SSSCA1-202ENST00000526433 CHD1O14646 1710 aa27.83■■■□□ 2.05
SSSCA1-202ENST00000526433 CHMP7Q8WUX9 453 aaPredicted RBP27.82■■■□□ 2.04
SSSCA1-202ENST00000526433 SYNJ2O15056 1496 aa27.74■■■□□ 2.03
SSSCA1-202ENST00000526433 ERICH3Q5RHP9 1530 aa27.67■■■□□ 2.02
SSSCA1-202ENST00000526433 TRIM41Q8WV44 630 aa27.65■■■□□ 2.02
SSSCA1-202ENST00000526433 KIF27Q86VH2 1401 aa27.65■■■□□ 2.02
SSSCA1-202ENST00000526433 FHAD1B1AJZ9 1412 aa27.62■■■□□ 2.01
SSSCA1-202ENST00000526433 ADAMTS12P58397 1594 aa27.61■■■□□ 2.01
SSSCA1-202ENST00000526433 IGF1RP08069 1367 aa27.58■■■□□ 2.01
SSSCA1-202ENST00000526433 GRIN2AQ12879 1464 aa27.57■■■□□ 2
SSSCA1-202ENST00000526433 CLASP1Q7Z460 1538 aa27.51■■■□□ 2
SSSCA1-202ENST00000526433 RIMBP3CA6NJZ7 1639 aa27.49■■□□□ 1.99
SSSCA1-202ENST00000526433 RIMBP3BA6NNM3 1639 aa27.49■■□□□ 1.99
SSSCA1-202ENST00000526433 RIMBP3Q9UFD9 1639 aa27.49■■□□□ 1.99
SSSCA1-202ENST00000526433 ARHGEF11O15085 1522 aa27.47■■□□□ 1.99
SSSCA1-202ENST00000526433 RUSC2Q8N2Y8 1516 aa27.44■■□□□ 1.98
SSSCA1-202ENST00000526433 NUP160Q12769 1436 aa27.43■■□□□ 1.98
SSSCA1-202ENST00000526433 CEP170Q5SW79 1584 aa27.42■■□□□ 1.98
SSSCA1-202ENST00000526433 CARMIL1Q5VZK9 1371 aa27.41■■□□□ 1.98
SSSCA1-202ENST00000526433 CUL7Q14999 1698 aa27.4■■□□□ 1.98
SSSCA1-202ENST00000526433 CHIC1Q5VXU3 224 aa27.33■■□□□ 1.97
SSSCA1-202ENST00000526433 CYB5RLQ6IPT4 315 aa27.33■■□□□ 1.97
SSSCA1-202ENST00000526433 JPH4Q96JJ6 628 aa27.26■■□□□ 1.95
SSSCA1-202ENST00000526433 ARAP1Q96P48 1450 aa27.25■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms