RNA–Protein interactions for RNA: ENST00000521253.1

TRIM35-203, Transcript of tripartite motif containing 35, humanhuman

TSL 1 (best) BASIC

Gene TRIM35, Length 1,215 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-203ENST00000521253 HMGB2P26583 209 aaKnown RBP27.56■■■□□ 2
TRIM35-203ENST00000521253 SLC52A2Q9HAB3 445 aa27.56■■■□□ 2
TRIM35-203ENST00000521253 MYBBP1AQ9BQG0 1328 aaKnown RBP27.56■■■□□ 2
TRIM35-203ENST00000521253 SCN11AQ9UI33 1791 aa27.55■■■□□ 2
TRIM35-203ENST00000521253 MAP3K5Q99683 1374 aa27.55■■■□□ 2
TRIM35-203ENST00000521253 C5P01031 1676 aa27.55■■■□□ 2
TRIM35-203ENST00000521253 GNAT3A8MTJ3 354 aa27.54■■■□□ 2
TRIM35-203ENST00000521253 ATP6V1AP38606 617 aa27.54■■■□□ 2
TRIM35-203ENST00000521253 ITPK1Q13572 414 aa27.54■■■□□ 2
TRIM35-203ENST00000521253 MRC1P22897 1456 aa27.53■■■□□ 2
TRIM35-203ENST00000521253 LINC00116Q8NCU8 138 aa27.53■■■□□ 2
TRIM35-203ENST00000521253 SLC4A9Q96Q91 983 aa27.53■■■□□ 2
TRIM35-203ENST00000521253 RBM42Q9BTD8 480 aaKnown RBP27.53■■■□□ 2
TRIM35-203ENST00000521253 ATF5Q9Y2D1 282 aaPredicted RBP27.53■■■□□ 2
TRIM35-203ENST00000521253 MTFR1LQ9H019 292 aa27.52■■■□□ 2
TRIM35-203ENST00000521253 PRKRIP1Q9H875 184 aaPredicted RBP27.52■■■□□ 2
TRIM35-203ENST00000521253 ADAMTS7Q9UKP4 1686 aa27.52■■■□□ 2
TRIM35-203ENST00000521253 TAF1LQ8IZX4 1826 aa27.51■■□□□ 1.99
TRIM35-203ENST00000521253 IL17REQ8NFR9 667 aa27.5■■□□□ 1.99
TRIM35-203ENST00000521253 AK7Q96M32 723 aa27.5■■□□□ 1.99
TRIM35-203ENST00000521253 C4BP0C0L5 1744 aa27.5■■□□□ 1.99
TRIM35-203ENST00000521253 QSER1Q2KHR3 1735 aa27.5■■□□□ 1.99
TRIM35-203ENST00000521253 TUBGCP6Q96RT7 1819 aa27.49■■□□□ 1.99
TRIM35-203ENST00000521253 PTCD1O75127 700 aaKnown RBP27.49■■□□□ 1.99
TRIM35-203ENST00000521253 PTGER2P43116 358 aa27.49■■□□□ 1.99
TRIM35-203ENST00000521253 AMIGO3Q86WK7 504 aa27.47■■□□□ 1.99
TRIM35-203ENST00000521253 COL23A1Q86Y22 540 aaPredicted RBP27.47■■□□□ 1.99
TRIM35-203ENST00000521253 SLC16A10Q8TF71 515 aa27.47■■□□□ 1.99
TRIM35-203ENST00000521253 SLC39A6Q13433 755 aa27.46■■□□□ 1.99
TRIM35-203ENST00000521253 PPP1R1BQ9UD71 204 aaPredicted RBP27.46■■□□□ 1.99
TRIM35-203ENST00000521253 MSH5O43196 834 aa27.45■■□□□ 1.98
TRIM35-203ENST00000521253 PLEKHF1Q96S99 279 aa27.45■■□□□ 1.98
TRIM35-203ENST00000521253 SGIP1Q9BQI5 828 aa27.45■■□□□ 1.98
TRIM35-203ENST00000521253 CEMIPQ8WUJ3 1361 aa27.45■■□□□ 1.98
TRIM35-203ENST00000521253 TEFQ10587 303 aa27.44■■□□□ 1.98
TRIM35-203ENST00000521253 ZNF831Q5JPB2 1677 aa27.43■■□□□ 1.98
TRIM35-203ENST00000521253 SMIM5Q71RC9 77 aa27.43■■□□□ 1.98
TRIM35-203ENST00000521253 FLAD1Q8NFF5 587 aa27.43■■□□□ 1.98
TRIM35-203ENST00000521253 VIRMAQ69YN4 1812 aaKnown RBP27.42■■□□□ 1.98
TRIM35-203ENST00000521253 GNPATO15228 680 aa27.42■■□□□ 1.98
TRIM35-203ENST00000521253 NEFMP07197 916 aa27.42■■□□□ 1.98
TRIM35-203ENST00000521253 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.41■■□□□ 1.98
TRIM35-203ENST00000521253 PHF14O94880 888 aa27.41■■□□□ 1.98
TRIM35-203ENST00000521253 RTF1Q92541 710 aaKnown RBP27.41■■□□□ 1.98
TRIM35-203ENST00000521253 MCM10Q7L590 875 aa27.4■■□□□ 1.98
TRIM35-203ENST00000521253 PNNQ9H307 717 aaKnown RBP27.4■■□□□ 1.98
TRIM35-203ENST00000521253 SSFA2P28290 1259 aa27.39■■□□□ 1.98
TRIM35-203ENST00000521253 CNTNAP4Q9C0A0 1308 aa27.39■■□□□ 1.97
TRIM35-203ENST00000521253 KCPQ6ZWJ8 1503 aa27.38■■□□□ 1.97
TRIM35-203ENST00000521253 HTATSF1O43719 755 aaKnown RBP27.38■■□□□ 1.97
TRIM35-203ENST00000521253 DCTN1Q14203 1278 aa27.38■■□□□ 1.97
TRIM35-203ENST00000521253 RC3H1Q5TC82 1133 aaKnown RBP27.38■■□□□ 1.97
TRIM35-203ENST00000521253 UBR3Q6ZT12 1888 aa27.38■■□□□ 1.97
TRIM35-203ENST00000521253 MAPK8IP3Q9UPT6 1336 aa27.38■■□□□ 1.97
TRIM35-203ENST00000521253 NFE2L2Q16236 605 aa27.36■■□□□ 1.97
TRIM35-203ENST00000521253 DNAJC10Q8IXB1 793 aa27.36■■□□□ 1.97
TRIM35-203ENST00000521253 TTC5Q8N0Z6 440 aa27.36■■□□□ 1.97
TRIM35-203ENST00000521253 COL5A3P25940 1745 aaPredicted RBP27.36■■□□□ 1.97
TRIM35-203ENST00000521253 MSL1Q68DK7 614 aa27.35■■□□□ 1.97
TRIM35-203ENST00000521253 ZNF790Q6PG37 636 aa27.35■■□□□ 1.97
TRIM35-203ENST00000521253 ARXQ96QS3 562 aa27.35■■□□□ 1.97
TRIM35-203ENST00000521253 RTCBQ9Y3I0 505 aaKnown RBP27.35■■□□□ 1.97
TRIM35-203ENST00000521253 TJP1Q07157 1748 aa27.34■■□□□ 1.97
TRIM35-203ENST00000521253 POLD1P28340 1107 aa27.34■■□□□ 1.97
TRIM35-203ENST00000521253 CRKLP46109 303 aaKnown RBP27.34■■□□□ 1.97
TRIM35-203ENST00000521253 WDR43Q15061 677 aaKnown RBP eCLIP27.34■■□□□ 1.97
TRIM35-203ENST00000521253 CICQ96RK0 1608 aaPredicted RBP27.34■■□□□ 1.97
TRIM35-203ENST00000521253 SIPA1L3O60292 1781 aaPredicted RBP27.33■■□□□ 1.97
TRIM35-203ENST00000521253 BTBD11A6QL63 1104 aa27.33■■□□□ 1.97
TRIM35-203ENST00000521253 VSIG10Q8N0Z9 540 aa27.33■■□□□ 1.97
TRIM35-203ENST00000521253 RPS6KA4O75676 772 aa27.32■■□□□ 1.96
TRIM35-203ENST00000521253 ZNF496Q96IT1 587 aaPredicted RBP27.32■■□□□ 1.96
TRIM35-203ENST00000521253 COL24A1Q17RW2 1714 aa27.31■■□□□ 1.96
TRIM35-203ENST00000521253 TRAPPC3LQ5T215 181 aa27.31■■□□□ 1.96
TRIM35-203ENST00000521253 ADAMTS8Q9UP79 889 aa27.31■■□□□ 1.96
TRIM35-203ENST00000521253 UBR2Q8IWV8 1755 aa27.3■■□□□ 1.96
TRIM35-203ENST00000521253 KCNQ3O43525 872 aa27.3■■□□□ 1.96
TRIM35-203ENST00000521253 INTS5Q6P9B9 1019 aaKnown RBP27.3■■□□□ 1.96
TRIM35-203ENST00000521253 CCDC146Q8IYE0 955 aa27.3■■□□□ 1.96
TRIM35-203ENST00000521253 FHDC1Q9C0D6 1143 aaPredicted RBP27.3■■□□□ 1.96
TRIM35-203ENST00000521253 CYP19A1P11511 503 aaPredicted RBP27.29■■□□□ 1.96
TRIM35-203ENST00000521253 ADRA2BP18089 450 aa27.29■■□□□ 1.96
TRIM35-203ENST00000521253 MYH14Q7Z406 1995 aaKnown RBP27.29■■□□□ 1.96
TRIM35-203ENST00000521253 HEG1Q9ULI3 1381 aa27.28■■□□□ 1.96
TRIM35-203ENST00000521253 ARHGEF1Q92888 912 aaKnown RBP27.28■■□□□ 1.96
TRIM35-203ENST00000521253 CCDC87Q9NVE4 849 aa27.28■■□□□ 1.96
TRIM35-203ENST00000521253 FMNL2Q96PY5 1086 aa27.27■■□□□ 1.96
TRIM35-203ENST00000521253 THUMPD2Q9BTF0 503 aaKnown RBP27.27■■□□□ 1.96
TRIM35-203ENST00000521253 TAF7Q15545 349 aaPredicted RBP27.26■■□□□ 1.95
TRIM35-203ENST00000521253 SYT17Q9BSW7 474 aa27.26■■□□□ 1.95
TRIM35-203ENST00000521253 ANP32CO43423 234 aa27.25■■□□□ 1.95
TRIM35-203ENST00000521253 TMPOP42166 694 aaKnown RBP27.25■■□□□ 1.95
TRIM35-203ENST00000521253 RIPK4P57078 832 aa27.25■■□□□ 1.95
TRIM35-203ENST00000521253 RUNDC1Q96C34 613 aa27.25■■□□□ 1.95
TRIM35-203ENST00000521253 DLG5Q8TDM6 1919 aa27.25■■□□□ 1.95
TRIM35-203ENST00000521253 RFC4P35249 363 aa27.24■■□□□ 1.95
TRIM35-203ENST00000521253 CCDC184Q52MB2 194 aa27.24■■□□□ 1.95
TRIM35-203ENST00000521253 ZBTB1Q9Y2K1 713 aa27.24■■□□□ 1.95
TRIM35-203ENST00000521253 STARD3NLO95772 234 aa27.23■■□□□ 1.95
TRIM35-203ENST00000521253 MIS18AQ9NYP9 233 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms