RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 PCDHB11Q9Y5F2 797 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 ESPNB1AK53 854 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 ZNF76P36508 570 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 MAPK8P45983 427 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 GNL2Q13823 731 aaKnown RBP9.79□□□□□ -0.84
NPHP3-211ENST00000515289 SEPT12Q8IYM1 358 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 FAM160A2Q8N612 972 aaPredicted RBP9.79□□□□□ -0.84
NPHP3-211ENST00000515289 TMC1Q8TDI8 760 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 GMLQ99445 158 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 CAPN10Q9HC96 672 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 VTI1BQ9UEU0 232 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 CCDC88BA6NC98 1476 aa9.79□□□□□ -0.84
NPHP3-211ENST00000515289 MAGEB6P1A0A0J9YX57 407 aa9.78□□□□□ -0.84
NPHP3-211ENST00000515289 IGHA2P01877 340 aa9.78□□□□□ -0.84
NPHP3-211ENST00000515289 PSMD2Q13200 908 aa9.78□□□□□ -0.84
NPHP3-211ENST00000515289 ERFEQ4G0M1 354 aa9.78□□□□□ -0.84
NPHP3-211ENST00000515289 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.78□□□□□ -0.84
NPHP3-211ENST00000515289 DHX38Q92620 1227 aaKnown RBP9.78□□□□□ -0.84
NPHP3-211ENST00000515289 ALKBH8Q96BT7 664 aaKnown RBP9.78□□□□□ -0.84
NPHP3-211ENST00000515289 ZNF358Q9NW07 568 aa9.78□□□□□ -0.84
NPHP3-211ENST00000515289 PCDH10Q9P2E7 1040 aa9.78□□□□□ -0.84
NPHP3-211ENST00000515289 PBX2P40425 430 aa9.77□□□□□ -0.85
NPHP3-211ENST00000515289 APLP1P51693 650 aa9.77□□□□□ -0.85
NPHP3-211ENST00000515289 ATP2B2Q01814 1243 aa9.77□□□□□ -0.85
NPHP3-211ENST00000515289 ALKBH2Q6NS38 261 aa9.77□□□□□ -0.85
NPHP3-211ENST00000515289 SLC10A4Q96EP9 437 aa9.77□□□□□ -0.85
NPHP3-211ENST00000515289 FAM129BQ96TA1 746 aa9.77□□□□□ -0.85
NPHP3-211ENST00000515289 TLDC2A0PJX2 215 aa9.76□□□□□ -0.85
NPHP3-211ENST00000515289 PDE3BQ13370 1112 aa9.76□□□□□ -0.85
NPHP3-211ENST00000515289 BPHLQ86WA6 291 aaPredicted RBP9.76□□□□□ -0.85
NPHP3-211ENST00000515289 SPSB2Q99619 263 aa9.76□□□□□ -0.85
NPHP3-211ENST00000515289 FZD6O60353 706 aa9.75□□□□□ -0.85
NPHP3-211ENST00000515289 MYCP01106 439 aaPredicted RBP9.75□□□□□ -0.85
NPHP3-211ENST00000515289 GTF2F1P35269 517 aaKnown RBP eCLIP9.75□□□□□ -0.85
NPHP3-211ENST00000515289 CCDC144BQ3MJ40 725 aa9.75□□□□□ -0.85
NPHP3-211ENST00000515289 C16orf46Q6P387 395 aa9.75□□□□□ -0.85
NPHP3-211ENST00000515289 ZNF662Q6ZS27 426 aa9.75□□□□□ -0.85
NPHP3-211ENST00000515289 MRPL50Q8N5N7 158 aaKnown RBP9.75□□□□□ -0.85
NPHP3-211ENST00000515289 GAS2L2Q8NHY3 880 aa9.75□□□□□ -0.85
NPHP3-211ENST00000515289 ACBD3Q9H3P7 528 aa9.75□□□□□ -0.85
NPHP3-211ENST00000515289 SCUBE2Q9NQ36 999 aa9.75□□□□□ -0.85
NPHP3-211ENST00000515289 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.75□□□□□ -0.85
NPHP3-211ENST00000515289 EIF1AXP47813 144 aaKnown RBP9.74□□□□□ -0.85
NPHP3-211ENST00000515289 PPP4CP60510 307 aa9.74□□□□□ -0.85
NPHP3-211ENST00000515289 SCG3Q8WXD2 468 aaKnown RBP9.74□□□□□ -0.85
NPHP3-211ENST00000515289 VTI1AQ96AJ9 217 aa9.74□□□□□ -0.85
NPHP3-211ENST00000515289 CWC22Q9HCG8 908 aaKnown RBP9.74□□□□□ -0.85
NPHP3-211ENST00000515289 PRDM9Q9NQV7 894 aa9.74□□□□□ -0.85
NPHP3-211ENST00000515289 RNF19AQ9NV58 838 aa9.74□□□□□ -0.85
NPHP3-211ENST00000515289 CCDC87Q9NVE4 849 aa9.74□□□□□ -0.85
NPHP3-211ENST00000515289 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.74□□□□□ -0.85
NPHP3-211ENST00000515289 AXIN2Q9Y2T1 843 aa9.74□□□□□ -0.85
NPHP3-211ENST00000515289 GPR182O15218 404 aa9.73□□□□□ -0.85
NPHP3-211ENST00000515289 CDV3Q9UKY7 258 aaKnown RBP9.73□□□□□ -0.85
NPHP3-211ENST00000515289 IQSEC3Q9UPP2 1182 aaPredicted RBP9.73□□□□□ -0.85
NPHP3-211ENST00000515289 BAZ1BQ9UIG0 1483 aaKnown RBP9.72□□□□□ -0.85
NPHP3-211ENST00000515289 TMEM229AB2RXF0 380 aa9.72□□□□□ -0.85
NPHP3-211ENST00000515289 RBL2Q08999 1139 aa9.72□□□□□ -0.85
NPHP3-211ENST00000515289 ALG1LQ6GMV1 187 aa9.72□□□□□ -0.85
NPHP3-211ENST00000515289 PTCRAQ6ISU1 281 aaPredicted RBP9.72□□□□□ -0.85
NPHP3-211ENST00000515289 SAP130Q9H0E3 1048 aa9.72□□□□□ -0.85
NPHP3-211ENST00000515289 WWC3Q9ULE0 1092 aa9.72□□□□□ -0.85
NPHP3-211ENST00000515289 WASLO00401 505 aaPredicted RBP9.71□□□□□ -0.86
NPHP3-211ENST00000515289 BACH1O14867 736 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 AAMPQ13685 434 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 ENOX2Q16206 610 aaKnown RBP9.71□□□□□ -0.86
NPHP3-211ENST00000515289 SOGA3Q5TF21 947 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 MAMSTRQ6ZN01 415 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 C1QTNF2Q9BXJ5 285 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 STIM2Q9P246 746 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 ATAD2Q6PL18 1390 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 NCAPD3P42695 1498 aa9.71□□□□□ -0.86
NPHP3-211ENST00000515289 TK2O00142 265 aa9.7□□□□□ -0.86
NPHP3-211ENST00000515289 DNAJA1P31689 397 aaKnown RBP9.7□□□□□ -0.86
NPHP3-211ENST00000515289 TNNI2P48788 182 aa9.7□□□□□ -0.86
NPHP3-211ENST00000515289 AGERQ15109 404 aa9.7□□□□□ -0.86
NPHP3-211ENST00000515289 SDE2Q6IQ49 451 aa9.7□□□□□ -0.86
NPHP3-211ENST00000515289 TBX22Q9Y458 520 aa9.7□□□□□ -0.86
NPHP3-211ENST00000515289 EMILIN1Q9Y6C2 1016 aa9.7□□□□□ -0.86
NPHP3-211ENST00000515289 HMGXB3Q12766 1538 aa9.7□□□□□ -0.86
NPHP3-211ENST00000515289 TNFRSF10BO14763 440 aa9.69□□□□□ -0.86
NPHP3-211ENST00000515289 GNA15P30679 374 aa9.69□□□□□ -0.86
NPHP3-211ENST00000515289 ARID5AQ03989 594 aa9.69□□□□□ -0.86
NPHP3-211ENST00000515289 C4orf48Q5BLP8 95 aa9.69□□□□□ -0.86
NPHP3-211ENST00000515289 TRMT44Q8IYL2 757 aaKnown RBP9.69□□□□□ -0.86
NPHP3-211ENST00000515289 HPS5Q9UPZ3 1129 aa9.69□□□□□ -0.86
NPHP3-211ENST00000515289 EPHA4P54764 986 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 VARS2Q5ST30 1063 aaKnown RBP9.68□□□□□ -0.86
NPHP3-211ENST00000515289 EGFLAMQ63HQ2 1017 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 TNS4Q8IZW8 715 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 CCDC24Q8N4L8 307 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 ABTB2Q8N961 1025 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 ANKK1Q8NFD2 765 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 FOXJ1Q92949 421 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 CRELD1Q96HD1 420 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 SETDB2Q96T68 719 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 CYLDQ9NQC7 956 aa9.68□□□□□ -0.86
NPHP3-211ENST00000515289 TSR3Q9UJK0 312 aaKnown RBP9.68□□□□□ -0.86
NPHP3-211ENST00000515289 SBNO2Q9Y2G9 1366 aa9.67□□□□□ -0.86
NPHP3-211ENST00000515289 PNMA6FA0A0J9YX94 578 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms