RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 HOXB7P09629 217 aa20.43■□□□□ 0.86
NUP54-214ENST00000514307 ATF7IPQ6VMQ6 1270 aa20.43■□□□□ 0.86
NUP54-214ENST00000514307 UNC5CLQ8IV45 518 aa20.43■□□□□ 0.86
NUP54-214ENST00000514307 DZIP1LQ8IYY4 767 aaKnown RBP20.43■□□□□ 0.86
NUP54-214ENST00000514307 CCDC136Q96JN2 1154 aa20.43■□□□□ 0.86
NUP54-214ENST00000514307 STK31Q9BXU1 1019 aa20.43■□□□□ 0.86
NUP54-214ENST00000514307 CHMP4BQ9H444 224 aaKnown RBP20.43■□□□□ 0.86
NUP54-214ENST00000514307 MEGF6O75095 1541 aa20.43■□□□□ 0.86
NUP54-214ENST00000514307 FTSJ3Q8IY81 847 aaKnown RBP20.42■□□□□ 0.86
NUP54-214ENST00000514307 NFATC2IPQ8NCF5 419 aa20.42■□□□□ 0.86
NUP54-214ENST00000514307 API5Q9BZZ5 524 aaKnown RBP20.42■□□□□ 0.86
NUP54-214ENST00000514307 CCDC9Q9Y3X0 531 aaKnown RBP20.42■□□□□ 0.86
NUP54-214ENST00000514307 DLG5Q8TDM6 1919 aa20.42■□□□□ 0.86
NUP54-214ENST00000514307 ABCA3Q99758 1704 aa20.41■□□□□ 0.86
NUP54-214ENST00000514307 RGPD2P0DJD1 1756 aa20.41■□□□□ 0.86
NUP54-214ENST00000514307 EIF4A1P60842 406 aaKnown RBP20.41■□□□□ 0.86
NUP54-214ENST00000514307 C20orf194Q5TEA3 1177 aa20.41■□□□□ 0.86
NUP54-214ENST00000514307 SPATA31A1Q5TZJ5 1347 aa20.4■□□□□ 0.86
NUP54-214ENST00000514307 MEX3CQ5U5Q3 659 aaKnown RBP20.4■□□□□ 0.86
NUP54-214ENST00000514307 FNBP4Q8N3X1 1017 aaPredicted RBP20.4■□□□□ 0.86
NUP54-214ENST00000514307 C8orf37Q96NL8 207 aa20.4■□□□□ 0.86
NUP54-214ENST00000514307 SLC4A2P04920 1241 aa20.39■□□□□ 0.85
NUP54-214ENST00000514307 SPATA31A5Q5VU36 1347 aa20.38■□□□□ 0.85
NUP54-214ENST00000514307 SPATA31A7Q8IWB4 1347 aa20.38■□□□□ 0.85
NUP54-214ENST00000514307 KRT24Q2M2I5 525 aa20.38■□□□□ 0.85
NUP54-214ENST00000514307 BARGINQ6ZT62 677 aa20.38■□□□□ 0.85
NUP54-214ENST00000514307 TTC5Q8N0Z6 440 aa20.38■□□□□ 0.85
NUP54-214ENST00000514307 VPS72Q15906 364 aa20.37■□□□□ 0.85
NUP54-214ENST00000514307 ZNF790Q6PG37 636 aa20.37■□□□□ 0.85
NUP54-214ENST00000514307 PANK1Q8TE04 598 aa20.37■□□□□ 0.85
NUP54-214ENST00000514307 PTPRCP08575 1304 aa20.36■□□□□ 0.85
NUP54-214ENST00000514307 TRIM27P14373 513 aa20.35■□□□□ 0.85
NUP54-214ENST00000514307 DDB1Q16531 1140 aa20.35■□□□□ 0.85
NUP54-214ENST00000514307 CLUAP1Q96AJ1 413 aa20.35■□□□□ 0.85
NUP54-214ENST00000514307 USP21Q9UK80 565 aa20.35■□□□□ 0.85
NUP54-214ENST00000514307 DDX19BQ9UMR2 479 aa20.35■□□□□ 0.85
NUP54-214ENST00000514307 COG6Q9Y2V7 657 aa20.35■□□□□ 0.85
NUP54-214ENST00000514307 SLIT2O94813 1529 aa20.34■□□□□ 0.85
NUP54-214ENST00000514307 TCERG1O14776 1098 aaKnown RBP20.34■□□□□ 0.85
NUP54-214ENST00000514307 HDGFL1Q5TGJ6 251 aa20.34■□□□□ 0.85
NUP54-214ENST00000514307 RGS17Q9UGC6 210 aaPredicted RBP20.34■□□□□ 0.85
NUP54-214ENST00000514307 GIGYF1O75420 1035 aaPredicted RBP20.33■□□□□ 0.85
NUP54-214ENST00000514307 MVPQ14764 893 aaKnown RBP20.33■□□□□ 0.85
NUP54-214ENST00000514307 B4GALNT3Q6L9W6 998 aa20.33■□□□□ 0.85
NUP54-214ENST00000514307 FMNL2Q96PY5 1086 aa20.33■□□□□ 0.85
NUP54-214ENST00000514307 KCNQ3O43525 872 aa20.32■□□□□ 0.84
NUP54-214ENST00000514307 KDM6AO15550 1401 aaPredicted RBP20.31■□□□□ 0.84
NUP54-214ENST00000514307 SNRPA1P09661 255 aaKnown RBP20.31■□□□□ 0.84
NUP54-214ENST00000514307 EIF2S2P20042 333 aaKnown RBP20.31■□□□□ 0.84
NUP54-214ENST00000514307 TMOD3Q9NYL9 352 aa20.31■□□□□ 0.84
NUP54-214ENST00000514307 DISP2A7MBM2 1401 aa20.3■□□□□ 0.84
NUP54-214ENST00000514307 DBF4Q9UBU7 674 aaPredicted RBP20.3■□□□□ 0.84
NUP54-214ENST00000514307 LRRC37A3O60309 1634 aa20.3■□□□□ 0.84
NUP54-214ENST00000514307 RLBP1P12271 317 aa20.29■□□□□ 0.84
NUP54-214ENST00000514307 ITPRIPQ8IWB1 547 aa20.29■□□□□ 0.84
NUP54-214ENST00000514307 PARP4Q9UKK3 1724 aaKnown RBP20.29■□□□□ 0.84
NUP54-214ENST00000514307 HEG1Q9ULI3 1381 aa20.29■□□□□ 0.84
NUP54-214ENST00000514307 SLC39A6Q13433 755 aa20.28■□□□□ 0.84
NUP54-214ENST00000514307 TMEM57Q8N5G2 664 aa20.27■□□□□ 0.84
NUP54-214ENST00000514307 NECTIN2Q92692 538 aa20.27■□□□□ 0.84
NUP54-214ENST00000514307 TEX13AQ9BXU3 409 aaPredicted RBP20.27■□□□□ 0.84
NUP54-214ENST00000514307 HYPKQ9NX55 129 aa20.27■□□□□ 0.84
NUP54-214ENST00000514307 PKD1L3Q7Z443 1732 aa20.27■□□□□ 0.83
NUP54-214ENST00000514307 INTS3Q68E01 1043 aaKnown RBP20.26■□□□□ 0.83
NUP54-214ENST00000514307 POTEAQ6S8J7 498 aa20.26■□□□□ 0.83
NUP54-214ENST00000514307 BCL9LQ86UU0 1499 aa20.25■□□□□ 0.83
NUP54-214ENST00000514307 CCT4P50991 539 aaKnown RBP20.25■□□□□ 0.83
NUP54-214ENST00000514307 FLIIQ13045 1269 aa20.25■□□□□ 0.83
NUP54-214ENST00000514307 ZNF496Q96IT1 587 aaPredicted RBP20.25■□□□□ 0.83
NUP54-214ENST00000514307 TRPC5Q9UL62 973 aaPredicted RBP20.25■□□□□ 0.83
NUP54-214ENST00000514307 TNNQ9UQP3 1299 aa20.25■□□□□ 0.83
NUP54-214ENST00000514307 ADAMTS7Q9UKP4 1686 aa20.24■□□□□ 0.83
NUP54-214ENST00000514307 FKBP5Q13451 457 aaPredicted RBP20.24■□□□□ 0.83
NUP54-214ENST00000514307 FAM98CQ17RN3 349 aaKnown RBP20.24■□□□□ 0.83
NUP54-214ENST00000514307 ABCC4O15439 1325 aa20.24■□□□□ 0.83
NUP54-214ENST00000514307 GJD4Q96KN9 370 aaPredicted RBP20.23■□□□□ 0.83
NUP54-214ENST00000514307 RWDD1Q9H446 243 aaPredicted RBP20.23■□□□□ 0.83
NUP54-214ENST00000514307 DDX21Q9NR30 783 aaKnown RBP eCLIP20.23■□□□□ 0.83
NUP54-214ENST00000514307 NWD2Q9ULI1 1742 aa20.23■□□□□ 0.83
NUP54-214ENST00000514307 AFF2P51816 1311 aa20.23■□□□□ 0.83
NUP54-214ENST00000514307 ZBTB7BO15156 539 aaPredicted RBP20.22■□□□□ 0.83
NUP54-214ENST00000514307 DDX58O95786 925 aaKnown RBP20.22■□□□□ 0.83
NUP54-214ENST00000514307 CENPQQ7L2Z9 268 aaPredicted RBP20.22■□□□□ 0.83
NUP54-214ENST00000514307 G2E3Q7L622 706 aa20.22■□□□□ 0.83
NUP54-214ENST00000514307 PIGBQ92521 554 aa20.22■□□□□ 0.83
NUP54-214ENST00000514307 MRC1P22897 1456 aa20.22■□□□□ 0.83
NUP54-214ENST00000514307 SOCS7O14512 581 aa20.21■□□□□ 0.83
NUP54-214ENST00000514307 VSIG10Q8N0Z9 540 aa20.21■□□□□ 0.83
NUP54-214ENST00000514307 ZBTB40Q9NUA8 1239 aa20.21■□□□□ 0.83
NUP54-214ENST00000514307 CHPF2Q9P2E5 772 aa20.21■□□□□ 0.83
NUP54-214ENST00000514307 TNS2Q63HR2 1409 aa20.2■□□□□ 0.82
NUP54-214ENST00000514307 PLCH1Q4KWH8 1693 aa20.2■□□□□ 0.82
NUP54-214ENST00000514307 A0A0G2JS52 829 aa20.2■□□□□ 0.82
NUP54-214ENST00000514307 PRIM1P49642 420 aaKnown RBP20.2■□□□□ 0.82
NUP54-214ENST00000514307 MYT1Q01538 1121 aa20.2■□□□□ 0.82
NUP54-214ENST00000514307 MARCH10Q8NA82 808 aaPredicted RBP20.2■□□□□ 0.82
NUP54-214ENST00000514307 SYTL4Q96C24 671 aaPredicted RBP20.19■□□□□ 0.82
NUP54-214ENST00000514307 QTRT2Q9H974 415 aaKnown RBP20.19■□□□□ 0.82
NUP54-214ENST00000514307 ERBB4Q15303 1308 aa20.19■□□□□ 0.82
NUP54-214ENST00000514307 ONECUT3O60422 494 aaPredicted RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms