RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ZCRB1Q8TBF4 217 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-213ENST00000510187 THRAP3Q9Y2W1 955 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-213ENST00000510187 PCDHB15Q9Y5E8 787 aa20.31■□□□□ 0.84
SQSTM1-213ENST00000510187 VPS72Q15906 364 aa20.3■□□□□ 0.84
SQSTM1-213ENST00000510187 DZIP1LQ8IYY4 767 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-213ENST00000510187 AFF2P51816 1311 aa20.3■□□□□ 0.84
SQSTM1-213ENST00000510187 IFNL2Q8IZJ0 200 aa20.3■□□□□ 0.84
SQSTM1-213ENST00000510187 IL17REQ8NFR9 667 aa20.3■□□□□ 0.84
SQSTM1-213ENST00000510187 PKD1L3Q7Z443 1732 aa20.29■□□□□ 0.84
SQSTM1-213ENST00000510187 PHKG2P15735 406 aa20.29■□□□□ 0.84
SQSTM1-213ENST00000510187 MPRIPQ6WCQ1 1025 aa20.29■□□□□ 0.84
SQSTM1-213ENST00000510187 IFT57Q9NWB7 429 aa20.29■□□□□ 0.84
SQSTM1-213ENST00000510187 PCDH11XQ9BZA7 1347 aa20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 PCDH11YQ9BZA8 1340 aa20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 DISP2A7MBM2 1401 aa20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 GNAI1P63096 354 aa20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 FTSJ3Q8IY81 847 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 TSR2Q969E8 191 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 CFAP44Q96MT7 982 aa20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 BCL2L13Q9BXK5 485 aa20.28■□□□□ 0.84
SQSTM1-213ENST00000510187 CYP27B1O15528 508 aa20.27■□□□□ 0.84
SQSTM1-213ENST00000510187 LGR6Q9HBX8 967 aa20.27■□□□□ 0.84
SQSTM1-213ENST00000510187 TNNQ9UQP3 1299 aa20.27■□□□□ 0.84
SQSTM1-213ENST00000510187 EXOSC9Q06265 439 aaKnown RBP20.27■□□□□ 0.83
SQSTM1-213ENST00000510187 CDCA7Q9BWT1 371 aaPredicted RBP20.27■□□□□ 0.83
SQSTM1-213ENST00000510187 CEMIPQ8WUJ3 1361 aa20.26■□□□□ 0.83
SQSTM1-213ENST00000510187 ZNF853P0CG23 659 aa20.26■□□□□ 0.83
SQSTM1-213ENST00000510187 SMC4Q9NTJ3 1288 aa20.26■□□□□ 0.83
SQSTM1-213ENST00000510187 RNMTO43148 476 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-213ENST00000510187 BARGINQ6ZT62 677 aa20.25■□□□□ 0.83
SQSTM1-213ENST00000510187 DDX54Q8TDD1 881 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-213ENST00000510187 PDZRN3Q9UPQ7 1066 aa20.25■□□□□ 0.83
SQSTM1-213ENST00000510187 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-213ENST00000510187 HSP90AB1P08238 724 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 MBIPQ9NS73 344 aa20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 DDX19BQ9UMR2 479 aa20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 KIF16BQ96L93 1317 aa20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 EXOC5O00471 708 aa20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 HDAC1Q13547 482 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 NFKBIBQ15653 356 aa20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 ZNF428Q96B54 188 aa20.24■□□□□ 0.83
SQSTM1-213ENST00000510187 CHL1O00533 1208 aa20.23■□□□□ 0.83
SQSTM1-213ENST00000510187 TEFQ10587 303 aa20.23■□□□□ 0.83
SQSTM1-213ENST00000510187 ATF7IPQ6VMQ6 1270 aa20.23■□□□□ 0.83
SQSTM1-213ENST00000510187 LRRC37A3O60309 1634 aa20.23■□□□□ 0.83
SQSTM1-213ENST00000510187 FAM98CQ17RN3 349 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 ALDH1L2Q3SY69 923 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 SSH1Q8WYL5 1049 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 DCAF5Q96JK2 942 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 KDM6AO15550 1401 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 WNK3Q9BYP7 1800 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 TRIM27P14373 513 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 SLC4A3P48751 1232 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 BECN1Q14457 450 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 TAF7Q15545 349 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 UPF2Q9HAU5 1272 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 MIS18AQ9NYP9 233 aa20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 TRPC5Q9UL62 973 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-213ENST00000510187 IPO8O15397 1037 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-213ENST00000510187 DDB1Q16531 1140 aa20.21■□□□□ 0.83
SQSTM1-213ENST00000510187 TSPYL4Q9UJ04 414 aa20.21■□□□□ 0.83
SQSTM1-213ENST00000510187 BRPF1P55201 1214 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-213ENST00000510187 GJD4Q96KN9 370 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-213ENST00000510187 SHANK3Q9BYB0 1731 aa20.2■□□□□ 0.82
SQSTM1-213ENST00000510187 TNS2Q63HR2 1409 aa20.2■□□□□ 0.82
SQSTM1-213ENST00000510187 ATRNO75882 1429 aa20.19■□□□□ 0.82
SQSTM1-213ENST00000510187 ADAMTS7Q9UKP4 1686 aa20.19■□□□□ 0.82
SQSTM1-213ENST00000510187 NKX1-1Q15270 411 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-213ENST00000510187 QTRT2Q9H974 415 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-213ENST00000510187 BABAM1Q9NWV8 329 aa20.18■□□□□ 0.82
SQSTM1-213ENST00000510187 A0A0G2JS52 829 aa20.17■□□□□ 0.82
SQSTM1-213ENST00000510187 TBC1D32Q96NH3 1257 aa20.17■□□□□ 0.82
SQSTM1-213ENST00000510187 SLC52A2Q9HAB3 445 aa20.17■□□□□ 0.82
SQSTM1-213ENST00000510187 BTBD11A6QL63 1104 aa20.16■□□□□ 0.82
SQSTM1-213ENST00000510187 SEC24BO95487 1268 aa20.16■□□□□ 0.82
SQSTM1-213ENST00000510187 SCN11AQ9UI33 1791 aa20.16■□□□□ 0.82
SQSTM1-213ENST00000510187 ITPRIPQ8IWB1 547 aa20.16■□□□□ 0.82
SQSTM1-213ENST00000510187 NFATC2IPQ8NCF5 419 aa20.16■□□□□ 0.82
SQSTM1-213ENST00000510187 NOB1Q9ULX3 412 aaKnown RBP20.16■□□□□ 0.82
SQSTM1-213ENST00000510187 CABP4P57796 275 aa20.15■□□□□ 0.82
SQSTM1-213ENST00000510187 GLI3P10071 1580 aa20.15■□□□□ 0.82
SQSTM1-213ENST00000510187 ZNF772Q68DY9 489 aaPredicted RBP20.14■□□□□ 0.81
SQSTM1-213ENST00000510187 SMC5Q8IY18 1101 aa20.14■□□□□ 0.81
SQSTM1-213ENST00000510187 ERVV-2B6SEH9 535 aa20.13■□□□□ 0.81
SQSTM1-213ENST00000510187 ELL2O00472 640 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-213ENST00000510187 C8orf58Q8NAV2 365 aa20.13■□□□□ 0.81
SQSTM1-213ENST00000510187 CHMP4BQ9H444 224 aaKnown RBP20.13■□□□□ 0.81
SQSTM1-213ENST00000510187 ZBTB40Q9NUA8 1239 aa20.13■□□□□ 0.81
SQSTM1-213ENST00000510187 TSPYL6Q8N831 410 aa20.13■□□□□ 0.81
SQSTM1-213ENST00000510187 MRC1P22897 1456 aa20.13■□□□□ 0.81
SQSTM1-213ENST00000510187 GSE1Q14687 1217 aa20.12■□□□□ 0.81
SQSTM1-213ENST00000510187 KRT24Q2M2I5 525 aa20.12■□□□□ 0.81
SQSTM1-213ENST00000510187 TWISTNBQ3B726 338 aaPredicted RBP20.12■□□□□ 0.81
SQSTM1-213ENST00000510187 TMEM57Q8N5G2 664 aa20.12■□□□□ 0.81
SQSTM1-213ENST00000510187 MARCH10Q8NA82 808 aaPredicted RBP20.12■□□□□ 0.81
SQSTM1-213ENST00000510187 ARHGAP45Q92619 1136 aa20.11■□□□□ 0.81
SQSTM1-213ENST00000510187 SIPA1L3O60292 1781 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-213ENST00000510187 KCNQ3O43525 872 aa20.1■□□□□ 0.81
SQSTM1-213ENST00000510187 ONECUT3O60422 494 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-213ENST00000510187 VAMP4O75379 141 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms