RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 TMEM88BA6NKF7 163 aa5.17□□□□□ -1.58
TCOF1-208ENST00000506063 GCC1Q96CN9 775 aa5.17□□□□□ -1.58
TCOF1-208ENST00000506063 TRAK1Q9UPV9 953 aa5.17□□□□□ -1.58
TCOF1-208ENST00000506063 CCDC61Q9Y6R9 512 aa5.17□□□□□ -1.58
TCOF1-208ENST00000506063 HTTP42858 3142 aa5.17□□□□□ -1.58
TCOF1-208ENST00000506063 MYH14Q7Z406 1995 aaKnown RBP5.16□□□□□ -1.58
TCOF1-208ENST00000506063 CSB-PGBD3P0DP91 1061 aa5.16□□□□□ -1.58
TCOF1-208ENST00000506063 NLRP6P59044 892 aa5.16□□□□□ -1.58
TCOF1-208ENST00000506063 AFDNP55196 1824 aaKnown RBP5.16□□□□□ -1.58
TCOF1-208ENST00000506063 USP47Q96K76 1375 aa5.16□□□□□ -1.58
TCOF1-208ENST00000506063 LAMA3Q16787 3333 aa5.15□□□□□ -1.58
TCOF1-208ENST00000506063 CEP290O15078 2479 aa5.15□□□□□ -1.58
TCOF1-208ENST00000506063 PHF14O94880 888 aa5.15□□□□□ -1.59
TCOF1-208ENST00000506063 SSFA2P28290 1259 aa5.15□□□□□ -1.59
TCOF1-208ENST00000506063 DGKZQ13574 1117 aa5.15□□□□□ -1.59
TCOF1-208ENST00000506063 DEFB115Q30KQ5 88 aa5.15□□□□□ -1.59
TCOF1-208ENST00000506063 SYTL4Q96C24 671 aaPredicted RBP5.15□□□□□ -1.59
TCOF1-208ENST00000506063 CDK19Q9BWU1 502 aa5.15□□□□□ -1.59
TCOF1-208ENST00000506063 PALLDQ8WX93 1383 aa5.15□□□□□ -1.59
TCOF1-208ENST00000506063 COL5A3P25940 1745 aaPredicted RBP5.14□□□□□ -1.59
TCOF1-208ENST00000506063 LMNB1P20700 586 aa5.14□□□□□ -1.59
TCOF1-208ENST00000506063 DALRD3Q5D0E6 543 aaKnown RBP5.14□□□□□ -1.59
TCOF1-208ENST00000506063 LINC00116Q8NCU8 138 aa5.14□□□□□ -1.59
TCOF1-208ENST00000506063 DDX54Q8TDD1 881 aaKnown RBP5.14□□□□□ -1.59
TCOF1-208ENST00000506063 PIM2Q9P1W9 311 aa5.14□□□□□ -1.59
TCOF1-208ENST00000506063 NRXN2Q9P2S2 1712 aa5.14□□□□□ -1.59
TCOF1-208ENST00000506063 SCN11AQ9UI33 1791 aa5.14□□□□□ -1.59
TCOF1-208ENST00000506063 NFKBIEO00221 500 aa5.13□□□□□ -1.59
TCOF1-208ENST00000506063 AK7Q96M32 723 aa5.13□□□□□ -1.59
TCOF1-208ENST00000506063 NLRP2Q9NX02 1062 aa5.13□□□□□ -1.59
TCOF1-208ENST00000506063 KIAA0100Q14667 2235 aaKnown RBP5.12□□□□□ -1.59
TCOF1-208ENST00000506063 CACNA1SQ13698 1873 aa5.12□□□□□ -1.59
TCOF1-208ENST00000506063 CHRNA5P30532 468 aa5.12□□□□□ -1.59
TCOF1-208ENST00000506063 LDHDQ86WU2 507 aa5.12□□□□□ -1.59
TCOF1-208ENST00000506063 SLC17A8Q8NDX2 589 aa5.12□□□□□ -1.59
TCOF1-208ENST00000506063 CAPNS2Q96L46 248 aa5.12□□□□□ -1.59
TCOF1-208ENST00000506063 MUC3AQ02505 3323 aa5.12□□□□□ -1.59
TCOF1-208ENST00000506063 SPTBN5Q9NRC6 3674 aaKnown RBP5.12□□□□□ -1.59
TCOF1-208ENST00000506063 ZNF831Q5JPB2 1677 aa5.12□□□□□ -1.59
TCOF1-208ENST00000506063 MON2Q7Z3U7 1717 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 RBBP6Q7Z6E9 1792 aaKnown RBP5.11□□□□□ -1.59
TCOF1-208ENST00000506063 AOC2O75106 756 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 GYS1P13807 737 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 ITPK1Q13572 414 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 CYP4F22Q6NT55 531 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 KCNH5Q8NCM2 988 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 GPR101Q96P66 508 aaPredicted RBP5.11□□□□□ -1.59
TCOF1-208ENST00000506063 TAF1DQ9H5J8 278 aaPredicted RBP5.11□□□□□ -1.59
TCOF1-208ENST00000506063 CCDC87Q9NVE4 849 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 ZNF219Q9P2Y4 722 aaPredicted RBP5.11□□□□□ -1.59
TCOF1-208ENST00000506063 ANKRD31Q8N7Z5 1873 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 AKAP11Q9UKA4 1901 aa5.11□□□□□ -1.59
TCOF1-208ENST00000506063 LAMB4A4D0S4 1761 aa5.1□□□□□ -1.59
TCOF1-208ENST00000506063 SOX12O15370 315 aa5.1□□□□□ -1.59
TCOF1-208ENST00000506063 DDNO94850 711 aaPredicted RBP5.1□□□□□ -1.59
TCOF1-208ENST00000506063 COL11A2P13942 1736 aaPredicted RBP5.1□□□□□ -1.59
TCOF1-208ENST00000506063 FMR1Q06787 632 aaKnown RBP eCLIP5.1□□□□□ -1.591e-6■■□□□ 14.5
TCOF1-208ENST00000506063 DDR1Q08345 913 aa5.1□□□□□ -1.59
TCOF1-208ENST00000506063 NBPF15Q8N660 670 aa5.1□□□□□ -1.59
TCOF1-208ENST00000506063 ANKRD24Q8TF21 1146 aa5.1□□□□□ -1.59
TCOF1-208ENST00000506063 L3MBTL3Q96JM7 780 aaPredicted RBP5.1□□□□□ -1.59
TCOF1-208ENST00000506063 SLC4A1APQ9BWU0 796 aaKnown RBP5.1□□□□□ -1.59
TCOF1-208ENST00000506063 INSRP06213 1382 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 TTC21BQ7Z4L5 1316 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 GNPATO15228 680 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 CA12O43570 354 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 MAP2K2P36507 400 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 MNX1P50219 401 aaPredicted RBP5.09□□□□□ -1.59
TCOF1-208ENST00000506063 TMF1P82094 1093 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 NLGN1Q8N2Q7 840 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 BEGAINQ9BUH8 593 aa5.09□□□□□ -1.59
TCOF1-208ENST00000506063 PAPPA2Q9BXP8 1791 aa5.09□□□□□ -1.6
TCOF1-208ENST00000506063 ARFGEF2Q9Y6D5 1785 aa5.09□□□□□ -1.6
TCOF1-208ENST00000506063 KDRP35968 1356 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 USP31Q70CQ4 1352 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 ITGAEP38570 1179 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 ECE1P42892 770 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 BRPF1P55201 1214 aaPredicted RBP5.08□□□□□ -1.6
TCOF1-208ENST00000506063 CST9Q5W186 159 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 MAP1SQ66K74 1059 aaPredicted RBP5.08□□□□□ -1.6
TCOF1-208ENST00000506063 DPY19L2Q6NUT2 758 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 CNTROBQ8N137 903 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 ZCRB1Q8TBF4 217 aaKnown RBP5.08□□□□□ -1.6
TCOF1-208ENST00000506063 ZIC5Q96T25 663 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 CABP1Q9NZU7 370 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 ABT1Q9ULW3 272 aaKnown RBP5.08□□□□□ -1.6
TCOF1-208ENST00000506063 COLQQ9Y215 455 aaPredicted RBP5.08□□□□□ -1.6
TCOF1-208ENST00000506063 EYSQ5T1H1 3165 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 SLX4Q8IY92 1834 aa5.08□□□□□ -1.6
TCOF1-208ENST00000506063 LOC102724428A0A0B4J2F2 783 aa5.07□□□□□ -1.6
TCOF1-208ENST00000506063 HMGB2P26583 209 aaKnown RBP5.07□□□□□ -1.6
TCOF1-208ENST00000506063 SIK1P57059 783 aa5.07□□□□□ -1.6
TCOF1-208ENST00000506063 NBPF1Q3BBV0 1214 aa5.07□□□□□ -1.6
TCOF1-208ENST00000506063 ERFEQ4G0M1 354 aa5.07□□□□□ -1.6
TCOF1-208ENST00000506063 MPNDQ8N594 471 aa5.07□□□□□ -1.6
TCOF1-208ENST00000506063 ARHGEF1Q92888 912 aaKnown RBP5.07□□□□□ -1.6
TCOF1-208ENST00000506063 CABP2Q9NPB3 220 aa5.07□□□□□ -1.6
TCOF1-208ENST00000506063 DDX21Q9NR30 783 aaKnown RBP eCLIP5.07□□□□□ -1.6
TCOF1-208ENST00000506063 HPS5Q9UPZ3 1129 aa5.07□□□□□ -1.6
TCOF1-208ENST00000506063 PARP3Q9Y6F1 533 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms