RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 TMOD3Q9NYL9 352 aa17.75■□□□□ 0.43
CPNE1-227ENST00000498056 ZBED9Q6R2W3 1325 aa17.74■□□□□ 0.43
CPNE1-227ENST00000498056 CABP4P57796 275 aa17.74■□□□□ 0.43
CPNE1-227ENST00000498056 FAM196AQ6ZSG2 479 aa17.74■□□□□ 0.43
CPNE1-227ENST00000498056 SLC52A2Q9HAB3 445 aa17.74■□□□□ 0.43
CPNE1-227ENST00000498056 TJP1Q07157 1748 aa17.74■□□□□ 0.43
CPNE1-227ENST00000498056 TAF1LQ8IZX4 1826 aa17.74■□□□□ 0.43
CPNE1-227ENST00000498056 CALD1Q05682 793 aaKnown RBP17.73■□□□□ 0.43
CPNE1-227ENST00000498056 LAS1LQ9Y4W2 734 aaKnown RBP17.73■□□□□ 0.43
CPNE1-227ENST00000498056 COL5A3P25940 1745 aaPredicted RBP17.72■□□□□ 0.43
CPNE1-227ENST00000498056 ERVV-2B6SEH9 535 aa17.72■□□□□ 0.43
CPNE1-227ENST00000498056 PRIM1P49642 420 aaKnown RBP17.72■□□□□ 0.43
CPNE1-227ENST00000498056 NCBP3Q53F19 620 aaKnown RBP17.72■□□□□ 0.43
CPNE1-227ENST00000498056 CICQ96RK0 1608 aaPredicted RBP17.72■□□□□ 0.43
CPNE1-227ENST00000498056 KCPQ6ZWJ8 1503 aa17.72■□□□□ 0.43
CPNE1-227ENST00000498056 ZNF521Q96K83 1311 aa17.72■□□□□ 0.43
CPNE1-227ENST00000498056 ZNF831Q5JPB2 1677 aa17.71■□□□□ 0.42
CPNE1-227ENST00000498056 KCNQ2O43526 872 aa17.7■□□□□ 0.42
CPNE1-227ENST00000498056 NFATC2IPQ8NCF5 419 aa17.7■□□□□ 0.42
CPNE1-227ENST00000498056 RREB1Q92766 1687 aa17.7■□□□□ 0.42
CPNE1-227ENST00000498056 TRIM37O94972 964 aa17.69■□□□□ 0.42
CPNE1-227ENST00000498056 TSPYL4Q9UJ04 414 aa17.69■□□□□ 0.42
CPNE1-227ENST00000498056 BTBD11A6QL63 1104 aa17.68■□□□□ 0.42
CPNE1-227ENST00000498056 GOLGA2Q08379 1002 aa17.68■□□□□ 0.42
CPNE1-227ENST00000498056 WDR63Q8IWG1 891 aa17.68■□□□□ 0.42
CPNE1-227ENST00000498056 PIGBQ92521 554 aa17.68■□□□□ 0.42
CPNE1-227ENST00000498056 IFT57Q9NWB7 429 aa17.68■□□□□ 0.42
CPNE1-227ENST00000498056 IL16Q14005 1332 aa17.68■□□□□ 0.42
CPNE1-227ENST00000498056 NUP188Q5SRE5 1749 aa17.67■□□□□ 0.42
CPNE1-227ENST00000498056 GNAI1P63096 354 aa17.67■□□□□ 0.42
CPNE1-227ENST00000498056 TAF7Q15545 349 aaPredicted RBP17.67■□□□□ 0.42
CPNE1-227ENST00000498056 PTF1AQ7RTS3 328 aa17.67■□□□□ 0.42
CPNE1-227ENST00000498056 TSR2Q969E8 191 aaKnown RBP17.67■□□□□ 0.42
CPNE1-227ENST00000498056 PALLDQ8WX93 1383 aa17.66■□□□□ 0.42
CPNE1-227ENST00000498056 SLC39A6Q13433 755 aa17.66■□□□□ 0.42
CPNE1-227ENST00000498056 TTC5Q8N0Z6 440 aa17.66■□□□□ 0.42
CPNE1-227ENST00000498056 MIS18AQ9NYP9 233 aa17.66■□□□□ 0.42
CPNE1-227ENST00000498056 FANCIQ9NVI1 1328 aa17.66■□□□□ 0.42
CPNE1-227ENST00000498056 CFAP44Q96MT7 982 aa17.65■□□□□ 0.42
CPNE1-227ENST00000498056 BCL11BQ9C0K0 894 aaPredicted RBP17.65■□□□□ 0.42
CPNE1-227ENST00000498056 MBIPQ9NS73 344 aa17.65■□□□□ 0.42
CPNE1-227ENST00000498056 TUBGCP6Q96RT7 1819 aa17.64■□□□□ 0.41
CPNE1-227ENST00000498056 CDCA7LQ96GN5 454 aa17.64■□□□□ 0.41
CPNE1-227ENST00000498056 MYH16Q9H6N6 1097 aa17.64■□□□□ 0.41
CPNE1-227ENST00000498056 SPINK5Q9NQ38 1064 aaPredicted RBP17.64■□□□□ 0.41
CPNE1-227ENST00000498056 ASAP1Q9ULH1 1129 aa17.64■□□□□ 0.41
CPNE1-227ENST00000498056 CACNA1FO60840 1977 aa17.63■□□□□ 0.41
CPNE1-227ENST00000498056 E9PSI1 815 aa17.63■□□□□ 0.41
CPNE1-227ENST00000498056 ZNF790Q6PG37 636 aa17.63■□□□□ 0.41
CPNE1-227ENST00000498056 KCNQ3O43525 872 aa17.62■□□□□ 0.41
CPNE1-227ENST00000498056 ZNF853P0CG23 659 aa17.62■□□□□ 0.41
CPNE1-227ENST00000498056 ATG3Q9NT62 314 aa17.62■□□□□ 0.41
CPNE1-227ENST00000498056 C4BP0C0L5 1744 aa17.61■□□□□ 0.41
CPNE1-227ENST00000498056 CHL1O00533 1208 aa17.61■□□□□ 0.41
CPNE1-227ENST00000498056 PTCD1O75127 700 aaKnown RBP17.61■□□□□ 0.41
CPNE1-227ENST00000498056 SF3B2Q13435 895 aaKnown RBP17.61■□□□□ 0.41
CPNE1-227ENST00000498056 ILDR2Q71H61 639 aa17.61■□□□□ 0.41
CPNE1-227ENST00000498056 SMARCC1Q92922 1105 aaPredicted RBP17.61■□□□□ 0.41
CPNE1-227ENST00000498056 RBM42Q9BTD8 480 aaKnown RBP17.61■□□□□ 0.41
CPNE1-227ENST00000498056 BABAM1Q9NWV8 329 aa17.61■□□□□ 0.41
CPNE1-227ENST00000498056 APBA3O96018 575 aa17.6■□□□□ 0.41
CPNE1-227ENST00000498056 SLFN5Q08AF3 891 aa17.6■□□□□ 0.41
CPNE1-227ENST00000498056 MYH14Q7Z406 1995 aaKnown RBP17.6■□□□□ 0.41
CPNE1-227ENST00000498056 UBR3Q6ZT12 1888 aa17.59■□□□□ 0.41
CPNE1-227ENST00000498056 HEG1Q9ULI3 1381 aa17.59■□□□□ 0.41
CPNE1-227ENST00000498056 FMNL2Q96PY5 1086 aa17.59■□□□□ 0.41
CPNE1-227ENST00000498056 KRT24Q2M2I5 525 aa17.58■□□□□ 0.4
CPNE1-227ENST00000498056 ZNF496Q96IT1 587 aaPredicted RBP17.58■□□□□ 0.4
CPNE1-227ENST00000498056 C4AP0C0L4 1744 aa17.58■□□□□ 0.4
CPNE1-227ENST00000498056 EIF4A1P60842 406 aaKnown RBP17.57■□□□□ 0.4
CPNE1-227ENST00000498056 LOC102724428A0A0B4J2F2 783 aa17.56■□□□□ 0.4
CPNE1-227ENST00000498056 SIK1P57059 783 aa17.56■□□□□ 0.4
CPNE1-227ENST00000498056 DUSP27Q5VZP5 1158 aa17.56■□□□□ 0.4
CPNE1-227ENST00000498056 CCNL1Q9UK58 526 aaPredicted RBP17.56■□□□□ 0.4
CPNE1-227ENST00000498056 BAG6P46379 1132 aa17.55■□□□□ 0.4
CPNE1-227ENST00000498056 EXOSC9Q06265 439 aaKnown RBP17.55■□□□□ 0.4
CPNE1-227ENST00000498056 QSER1Q2KHR3 1735 aa17.55■□□□□ 0.4
CPNE1-227ENST00000498056 ELL2O00472 640 aaPredicted RBP17.54■□□□□ 0.4
CPNE1-227ENST00000498056 BCORQ6W2J9 1755 aa17.53■□□□□ 0.4
CPNE1-227ENST00000498056 PRAMEF22A3QJZ6 481 aa17.53■□□□□ 0.4
CPNE1-227ENST00000498056 ATP6V1AP38606 617 aa17.53■□□□□ 0.4
CPNE1-227ENST00000498056 KCNQ4P56696 695 aa17.53■□□□□ 0.4
CPNE1-227ENST00000498056 TWISTNBQ3B726 338 aaPredicted RBP17.53■□□□□ 0.4
CPNE1-227ENST00000498056 SNRPA1P09661 255 aaKnown RBP17.52■□□□□ 0.4
CPNE1-227ENST00000498056 EN1Q05925 392 aaPredicted RBP17.52■□□□□ 0.4
CPNE1-227ENST00000498056 DEFB132Q7Z7B7 95 aa17.52■□□□□ 0.4
CPNE1-227ENST00000498056 DNAJC10Q8IXB1 793 aa17.52■□□□□ 0.4
CPNE1-227ENST00000498056 TRMT2AQ8IZ69 625 aaKnown RBP17.52■□□□□ 0.4
CPNE1-227ENST00000498056 TSPYL6Q8N831 410 aa17.52■□□□□ 0.4
CPNE1-227ENST00000498056 C8orf58Q8NAV2 365 aa17.52■□□□□ 0.4
CPNE1-227ENST00000498056 SLC4A9Q96Q91 983 aa17.52■□□□□ 0.4
CPNE1-227ENST00000498056 ARFGEF2Q9Y6D5 1785 aa17.52■□□□□ 0.4
CPNE1-227ENST00000498056 SCN7AQ01118 1682 aa17.52■□□□□ 0.39
CPNE1-227ENST00000498056 PLSCR1O15162 318 aa17.51■□□□□ 0.39
CPNE1-227ENST00000498056 GIGYF1O75420 1035 aaPredicted RBP17.51■□□□□ 0.39
CPNE1-227ENST00000498056 TXNRD1Q16881 649 aa17.51■□□□□ 0.39
CPNE1-227ENST00000498056 CCDC125Q86Z20 511 aa17.51■□□□□ 0.39
CPNE1-227ENST00000498056 VSIG10Q8N0Z9 540 aa17.51■□□□□ 0.39
CPNE1-227ENST00000498056 UPF1Q92900 1129 aaKnown RBP eCLIP17.51■□□□□ 0.39
CPNE1-227ENST00000498056 HOXB7P09629 217 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms