RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 AK7Q96M32 723 aa21.23■□□□□ 0.99
HDAC4-213ENST00000496347 ARXQ96QS3 562 aa21.23■□□□□ 0.99
HDAC4-213ENST00000496347 ASAP1Q9ULH1 1129 aa21.23■□□□□ 0.99
HDAC4-213ENST00000496347 GOLGB1Q14789 3259 aaKnown RBP21.22■□□□□ 0.99
HDAC4-213ENST00000496347 FHDC1Q9C0D6 1143 aaPredicted RBP21.22■□□□□ 0.99
HDAC4-213ENST00000496347 ATG3Q9NT62 314 aa21.22■□□□□ 0.99
HDAC4-213ENST00000496347 AKAP4Q5JQC9 854 aa21.2■□□□□ 0.98
HDAC4-213ENST00000496347 COL23A1Q86Y22 540 aaPredicted RBP21.2■□□□□ 0.98
HDAC4-213ENST00000496347 DCAF8L1A6NGE4 600 aa21.19■□□□□ 0.98
HDAC4-213ENST00000496347 HMOX1P09601 288 aa21.19■□□□□ 0.98
HDAC4-213ENST00000496347 CABP4P57796 275 aa21.19■□□□□ 0.98
HDAC4-213ENST00000496347 LINC00116Q8NCU8 138 aa21.19■□□□□ 0.98
HDAC4-213ENST00000496347 SSFA2P28290 1259 aa21.18■□□□□ 0.98
HDAC4-213ENST00000496347 CFAP53Q96M91 514 aa21.18■□□□□ 0.98
HDAC4-213ENST00000496347 SYT17Q9BSW7 474 aa21.18■□□□□ 0.98
HDAC4-213ENST00000496347 TJP1Q07157 1748 aa21.18■□□□□ 0.98
HDAC4-213ENST00000496347 MSH5O43196 834 aa21.17■□□□□ 0.98
HDAC4-213ENST00000496347 ATP6V1AP38606 617 aa21.17■□□□□ 0.98
HDAC4-213ENST00000496347 ITPK1Q13572 414 aa21.17■□□□□ 0.98
HDAC4-213ENST00000496347 CNGB1Q14028 1251 aaPredicted RBP21.16■□□□□ 0.98
HDAC4-213ENST00000496347 UBR2Q8IWV8 1755 aa21.15■□□□□ 0.98
HDAC4-213ENST00000496347 C4AP0C0L4 1744 aa21.15■□□□□ 0.98
HDAC4-213ENST00000496347 CNTNAP4Q9C0A0 1308 aa21.14■□□□□ 0.97
HDAC4-213ENST00000496347 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.14■□□□□ 0.97
HDAC4-213ENST00000496347 U2SURPO15042 1029 aaKnown RBP21.14■□□□□ 0.97
HDAC4-213ENST00000496347 MYH14Q7Z406 1995 aaKnown RBP21.14■□□□□ 0.97
HDAC4-213ENST00000496347 SIPA1L3O60292 1781 aaPredicted RBP21.13■□□□□ 0.97
HDAC4-213ENST00000496347 GNPATO15228 680 aa21.13■□□□□ 0.97
HDAC4-213ENST00000496347 AMIGO3Q86WK7 504 aa21.13■□□□□ 0.97
HDAC4-213ENST00000496347 PHF14O94880 888 aa21.12■□□□□ 0.97
HDAC4-213ENST00000496347 PPP2R1AP30153 589 aa21.12■□□□□ 0.97
HDAC4-213ENST00000496347 MTHFSDQ2M296 383 aaKnown RBP21.12■□□□□ 0.97
HDAC4-213ENST00000496347 NFATC2IPQ8NCF5 419 aa21.12■□□□□ 0.97
HDAC4-213ENST00000496347 SLC52A2Q9HAB3 445 aa21.12■□□□□ 0.97
HDAC4-213ENST00000496347 MSL1Q68DK7 614 aa21.11■□□□□ 0.97
HDAC4-213ENST00000496347 GAS2L2Q8NHY3 880 aa21.11■□□□□ 0.97
HDAC4-213ENST00000496347 SLC4A9Q96Q91 983 aa21.11■□□□□ 0.97
HDAC4-213ENST00000496347 RBM42Q9BTD8 480 aaKnown RBP21.11■□□□□ 0.97
HDAC4-213ENST00000496347 CHD4Q14839 1912 aa21.11■□□□□ 0.97
HDAC4-213ENST00000496347 KCPQ6ZWJ8 1503 aa21.1■□□□□ 0.97
HDAC4-213ENST00000496347 ADRA2BP18089 450 aa21.1■□□□□ 0.97
HDAC4-213ENST00000496347 RNMTO43148 476 aaKnown RBP21.09■□□□□ 0.97
HDAC4-213ENST00000496347 RC3H1Q5TC82 1133 aaKnown RBP21.09■□□□□ 0.97
HDAC4-213ENST00000496347 NUDCQ9Y266 331 aa21.09■□□□□ 0.97
HDAC4-213ENST00000496347 RTCBQ9Y3I0 505 aaKnown RBP21.08■□□□□ 0.97
HDAC4-213ENST00000496347 KLHL34Q8N239 644 aa21.07■□□□□ 0.96
HDAC4-213ENST00000496347 RSPH6AQ9H0K4 717 aa21.07■□□□□ 0.96
HDAC4-213ENST00000496347 PTCD1O75127 700 aaKnown RBP21.06■□□□□ 0.96
HDAC4-213ENST00000496347 LGR6Q9HBX8 967 aa21.06■□□□□ 0.96
HDAC4-213ENST00000496347 KIF13BQ9NQT8 1826 aa21.05■□□□□ 0.96
HDAC4-213ENST00000496347 GNAT3A8MTJ3 354 aa21.04■□□□□ 0.96
HDAC4-213ENST00000496347 PRKAR2BP31323 418 aa21.04■□□□□ 0.96
HDAC4-213ENST00000496347 CEMIPQ8WUJ3 1361 aa21.03■□□□□ 0.96
HDAC4-213ENST00000496347 YY1P25490 414 aa21.03■□□□□ 0.96
HDAC4-213ENST00000496347 CD2APQ9Y5K6 639 aa21.03■□□□□ 0.96
HDAC4-213ENST00000496347 RPS6KA4O75676 772 aa21.02■□□□□ 0.96
HDAC4-213ENST00000496347 U2AF1L5P0DN76 240 aaPredicted RBP21.02■□□□□ 0.96
HDAC4-213ENST00000496347 CRKLP46109 303 aaKnown RBP21.02■□□□□ 0.96
HDAC4-213ENST00000496347 U2AF1Q01081 240 aaKnown RBP eCLIP21.02■□□□□ 0.96
HDAC4-213ENST00000496347 TRAPPC3LQ5T215 181 aa21.02■□□□□ 0.96
HDAC4-213ENST00000496347 SMIM5Q71RC9 77 aa21.02■□□□□ 0.96
HDAC4-213ENST00000496347 NLGN2Q8NFZ4 835 aa21.02■□□□□ 0.96
HDAC4-213ENST00000496347 FCHSD2O94868 740 aa21.01■□□□□ 0.95
HDAC4-213ENST00000496347 TEFQ10587 303 aa21■□□□□ 0.95
HDAC4-213ENST00000496347 VSIG10Q8N0Z9 540 aa21■□□□□ 0.95
HDAC4-213ENST00000496347 RFC4P35249 363 aa20.98■□□□□ 0.95
HDAC4-213ENST00000496347 SLC39A6Q13433 755 aa20.98■□□□□ 0.95
HDAC4-213ENST00000496347 GPR162Q16538 588 aa20.98■□□□□ 0.95
HDAC4-213ENST00000496347 TTC5Q8N0Z6 440 aa20.98■□□□□ 0.95
HDAC4-213ENST00000496347 ARHGEF1Q92888 912 aaKnown RBP20.98■□□□□ 0.95
HDAC4-213ENST00000496347 PHACTR3Q96KR7 559 aa20.98■□□□□ 0.95
HDAC4-213ENST00000496347 DLG5Q8TDM6 1919 aa20.98■□□□□ 0.95
HDAC4-213ENST00000496347 C10orf71Q711Q0 1435 aa20.97■□□□□ 0.95
HDAC4-213ENST00000496347 NLGN1Q8N2Q7 840 aa20.97■□□□□ 0.95
HDAC4-213ENST00000496347 IL17REQ8NFR9 667 aa20.97■□□□□ 0.95
HDAC4-213ENST00000496347 CCDC87Q9NVE4 849 aa20.97■□□□□ 0.95
HDAC4-213ENST00000496347 KIAA1551Q9HCM1 1747 aa20.97■□□□□ 0.95
HDAC4-213ENST00000496347 MMP10P09238 476 aa20.96■□□□□ 0.95
HDAC4-213ENST00000496347 DNAJC10Q8IXB1 793 aa20.96■□□□□ 0.95
HDAC4-213ENST00000496347 USP42Q9H9J4 1324 aaKnown RBP20.96■□□□□ 0.95
HDAC4-213ENST00000496347 GYS1P13807 737 aa20.95■□□□□ 0.94
HDAC4-213ENST00000496347 RALBP1Q15311 655 aa20.95■□□□□ 0.94
HDAC4-213ENST00000496347 INTS5Q6P9B9 1019 aaKnown RBP20.95■□□□□ 0.94
HDAC4-213ENST00000496347 SOS1Q07889 1333 aaPredicted RBP20.95■□□□□ 0.94
HDAC4-213ENST00000496347 SCN7AQ01118 1682 aa20.95■□□□□ 0.94
HDAC4-213ENST00000496347 CYP19A1P11511 503 aaPredicted RBP20.94■□□□□ 0.94
HDAC4-213ENST00000496347 ZNF790Q6PG37 636 aa20.94■□□□□ 0.94
HDAC4-213ENST00000496347 COL15A1P39059 1388 aa20.94■□□□□ 0.94
HDAC4-213ENST00000496347 HEG1Q9ULI3 1381 aa20.94■□□□□ 0.94
HDAC4-213ENST00000496347 NEFMP07197 916 aa20.92■□□□□ 0.94
HDAC4-213ENST00000496347 PELP1Q8IZL8 1130 aaKnown RBP20.92■□□□□ 0.94
HDAC4-213ENST00000496347 RTF1Q92541 710 aaKnown RBP20.92■□□□□ 0.94
HDAC4-213ENST00000496347 BRCA1P38398 1863 aaKnown RBP20.92■□□□□ 0.94
HDAC4-213ENST00000496347 PXDNLA1KZ92 1463 aa20.91■□□□□ 0.94
HDAC4-213ENST00000496347 HTATSF1O43719 755 aaKnown RBP20.91■□□□□ 0.94
HDAC4-213ENST00000496347 GRIN3BO60391 1043 aa20.91■□□□□ 0.94
HDAC4-213ENST00000496347 ZNF496Q96IT1 587 aaPredicted RBP20.91■□□□□ 0.94
HDAC4-213ENST00000496347 LAMB4A4D0S4 1761 aa20.9■□□□□ 0.94
HDAC4-213ENST00000496347 STARD3NLO95772 234 aa20.9■□□□□ 0.94
HDAC4-213ENST00000496347 YBX3P16989 372 aaKnown RBP eCLIP20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms