RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ARAP3Q8WWN8 1544 aa13.01□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CDC45O75419 566 aa13.01□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 GCC1Q96CN9 775 aa13.01□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 C19orf44Q9H6X5 657 aa13.01□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 PRAMEF22A3QJZ6 481 aa13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 MAPK8IP2Q13387 824 aaPredicted RBP13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 MYD88Q99836 296 aa13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 PLEKHG3A1L390 1219 aa13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 NEK4P51957 841 aa13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 IL17REQ8NFR9 667 aa13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 LRRCC1Q9C099 1032 aa13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 PA2G4Q9UQ80 394 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 MAP3K2Q9Y2U5 619 aa13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CCT4P50991 539 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 TRMT2AQ8IZ69 625 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CCDC8Q9H0W5 538 aaPredicted RBP13□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 KDM2BQ8NHM5 1336 aa12.99□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CWC27Q6UX04 472 aaKnown RBP12.99□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 TTC21AQ8NDW8 1320 aa12.99□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 ZBTB7BO15156 539 aaPredicted RBP12.99□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 GLI2P10070 1586 aa12.99□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CLASRPQ8N2M8 674 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 SPG7Q9UQ90 795 aa12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 GPTP24298 496 aa12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 INTS3Q68E01 1043 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 STK11IPQ8N1F8 1099 aa12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 PPFIA3O75145 1194 aa12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 PPP1R42Q7Z4L9 355 aa12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 KLHDC4Q8TBB5 520 aa12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 SYNMO15061 1565 aa12.98□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 TBC1D9Q6ZT07 1266 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 ADGRB3O60242 1522 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CADPS2Q86UW7 1296 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 DNAAF4Q8WXU2 420 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 TBC1D2Q9BYX2 928 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 IL16Q14005 1332 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 TULP4Q9NRJ4 1543 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 AACSQ86V21 672 aa12.97□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 ST18O60284 1047 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 TOMM22Q9NS69 142 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 FRMPD1Q5SYB0 1578 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CFAP74Q9C0B2 1584 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 INSRP06213 1382 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 DRC7Q8IY82 874 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 GPATCH3Q96I76 525 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 CHL1O00533 1208 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 HSP90B1P14625 803 aaKnown RBP12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 COPS6Q7L5N1 327 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 IP6K1Q92551 441 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 SYAP1Q96A49 352 aaPredicted RBP12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 ACSBG1Q96GR2 724 aa12.96□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 ALKQ9UM73 1620 aa12.96□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CBX1P83916 185 aa12.96□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 BICDL1Q6ZP65 573 aa12.96□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 UBE3BQ7Z3V4 1068 aa12.96□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 BOLA2Q9H3K6 86 aa12.96□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 REC8O95072 547 aa12.95□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CHMP4CQ96CF2 233 aa12.95□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 RPAP2Q8IXW5 612 aaPredicted RBP12.95□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 ARHGAP31Q2M1Z3 1444 aa12.95□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 FSD1Q9BTV5 496 aa12.95□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 AXIN2Q9Y2T1 843 aa12.95□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 MSH6P52701 1360 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 RNF214Q8ND24 703 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 XAGE3Q8WTP9 111 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 PNMA6EA0A0J9YXQ4 647 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 NBPF7P0C2Y1 421 aaPredicted RBP12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CAVIN1Q6NZI2 390 aaKnown RBP12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 NUCB1Q02818 461 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 MCTP1Q6DN14 999 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CCDC39Q9UFE4 941 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 USP19O94966 1318 aa12.94□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CEP85Q6P2H3 762 aa12.93□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 DBF4Q9UBU7 674 aaPredicted RBP12.93□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 NDUFB9Q9Y6M9 179 aa12.93□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 MX1P20591 662 aa12.93□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 ZFYVE9O95405 1425 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 SDSP20132 328 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 AAMPQ13685 434 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 MROH2AA6NES4 1674 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CLTCQ00610 1675 aaKnown RBP12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 A0A087WZG4 1122 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 PROSER3Q2NL68 480 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CHMP4AQ9BY43 222 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 APPP05067 770 aa12.92□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 PLEKHG1Q9ULL1 1385 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 HMGN5P82970 282 aaKnown RBP12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 HDAC1Q13547 482 aaPredicted RBP12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 AMOTQ4VCS5 1084 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CAMSAP1Q5T5Y3 1602 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 STK3Q13188 491 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 IFNL2Q8IZJ0 200 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 TCEANC2Q96MN5 208 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 USP6P35125 1406 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 SBNO1A3KN83 1393 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 TMEM94Q12767 1356 aa12.91□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 NEXMIFQ5QGS0 1516 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 FKBP4Q02790 459 aaKnown RBP eCLIP12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 MPNDQ8N594 471 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 NPHP3Q7Z494 1330 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms