RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 ERVV-2B6SEH9 535 aa22.72■■□□□ 1.23
UPF3A-206ENST00000480362 MYT1Q01538 1121 aa22.72■■□□□ 1.23
UPF3A-206ENST00000480362 ZNF772Q68DY9 489 aaPredicted RBP22.72■■□□□ 1.23
UPF3A-206ENST00000480362 C8orf58Q8NAV2 365 aa22.72■■□□□ 1.23
UPF3A-206ENST00000480362 SIPA1L3O60292 1781 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-206ENST00000480362 TSPYL6Q8N831 410 aa22.71■■□□□ 1.23
UPF3A-206ENST00000480362 MARCH10Q8NA82 808 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-206ENST00000480362 ELL2O00472 640 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-206ENST00000480362 ONECUT3O60422 494 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-206ENST00000480362 MRC1P22897 1456 aa22.7■■□□□ 1.22
UPF3A-206ENST00000480362 KCNQ3O43525 872 aa22.69■■□□□ 1.22
UPF3A-206ENST00000480362 VAMP4O75379 141 aa22.69■■□□□ 1.22
UPF3A-206ENST00000480362 KRT24Q2M2I5 525 aa22.69■■□□□ 1.22
UPF3A-206ENST00000480362 TWISTNBQ3B726 338 aaPredicted RBP22.69■■□□□ 1.22
UPF3A-206ENST00000480362 THSD7AQ9UPZ6 1657 aa22.68■■□□□ 1.22
UPF3A-206ENST00000480362 RARSP54136 660 aaKnown RBP22.67■■□□□ 1.22
UPF3A-206ENST00000480362 KDM3BQ7LBC6 1761 aa22.67■■□□□ 1.22
UPF3A-206ENST00000480362 EIF4A1P60842 406 aaKnown RBP22.66■■□□□ 1.22
UPF3A-206ENST00000480362 TOGARAM1Q9Y4F4 1720 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 RNF123Q5XPI4 1314 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 BCAR3O75815 825 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 SLC39A6Q13433 755 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 SEPT12Q8IYM1 358 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 ZNF790Q6PG37 636 aa22.64■■□□□ 1.21
UPF3A-206ENST00000480362 ZNF428Q96B54 188 aa22.64■■□□□ 1.21
UPF3A-206ENST00000480362 TMOD3Q9NYL9 352 aa22.64■■□□□ 1.21
UPF3A-206ENST00000480362 RBM6P78332 1123 aaKnown RBP22.63■■□□□ 1.21
UPF3A-206ENST00000480362 RRP1P56182 461 aaKnown RBP22.62■■□□□ 1.21
UPF3A-206ENST00000480362 SSH1Q8WYL5 1049 aa22.62■■□□□ 1.21
UPF3A-206ENST00000480362 BCL2L13Q9BXK5 485 aa22.62■■□□□ 1.21
UPF3A-206ENST00000480362 PRIM1P49642 420 aaKnown RBP22.61■■□□□ 1.21
UPF3A-206ENST00000480362 ALDH1L2Q3SY69 923 aa22.61■■□□□ 1.21
UPF3A-206ENST00000480362 TTC5Q8N0Z6 440 aa22.61■■□□□ 1.21
UPF3A-206ENST00000480362 PIGBQ92521 554 aa22.61■■□□□ 1.21
UPF3A-206ENST00000480362 ITGB4P16144 1822 aa22.6■■□□□ 1.21
UPF3A-206ENST00000480362 ACSBG1Q96GR2 724 aa22.6■■□□□ 1.21
UPF3A-206ENST00000480362 SMC4Q9NTJ3 1288 aa22.6■■□□□ 1.21
UPF3A-206ENST00000480362 RGS17Q9UGC6 210 aaPredicted RBP22.6■■□□□ 1.21
UPF3A-206ENST00000480362 SOS1Q07889 1333 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-206ENST00000480362 SYTL4Q96C24 671 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-206ENST00000480362 DOT1LQ8TEK3 1739 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 TCERG1O14776 1098 aaKnown RBP22.58■■□□□ 1.21
UPF3A-206ENST00000480362 PLIN1O60240 522 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 NEFLP07196 543 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 HEG1Q9ULI3 1381 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 BCL9O00512 1426 aa22.57■■□□□ 1.2
UPF3A-206ENST00000480362 GIGYF1O75420 1035 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-206ENST00000480362 HOXB7P09629 217 aa22.57■■□□□ 1.2
UPF3A-206ENST00000480362 RXRBP28702 533 aa22.57■■□□□ 1.2
UPF3A-206ENST00000480362 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-206ENST00000480362 ZNF496Q96IT1 587 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-206ENST00000480362 MRPL50Q8N5N7 158 aaKnown RBP22.56■■□□□ 1.2
UPF3A-206ENST00000480362 FMNL2Q96PY5 1086 aa22.56■■□□□ 1.2
UPF3A-206ENST00000480362 IRX6P78412 446 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-206ENST00000480362 FAM182BQ5T319 152 aa22.55■■□□□ 1.2
UPF3A-206ENST00000480362 FRAT1Q92837 279 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-206ENST00000480362 ATG3Q9NT62 314 aa22.55■■□□□ 1.2
UPF3A-206ENST00000480362 ASAP1Q9ULH1 1129 aa22.55■■□□□ 1.2
UPF3A-206ENST00000480362 KAT6BQ8WYB5 2073 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 PAPPAQ13219 1627 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 CCDC30Q5VVM6 783 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 POTEAQ6S8J7 498 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 PRAMEF22A3QJZ6 481 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 EIF2S2P20042 333 aaKnown RBP22.53■■□□□ 1.2
UPF3A-206ENST00000480362 BRPF1P55201 1214 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-206ENST00000480362 HDGFL1Q5TGJ6 251 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 KRT27Q7Z3Y8 459 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 NECTIN2Q92692 538 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 GTF3C3Q9Y5Q9 886 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 KCNQ2O43526 872 aa22.52■■□□□ 1.2
UPF3A-206ENST00000480362 PTCD1O75127 700 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 SNRPA1P09661 255 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 CANXP27824 592 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 CHMP4AQ9BY43 222 aa22.52■■□□□ 1.2
UPF3A-206ENST00000480362 NOB1Q9ULX3 412 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 UBR2Q8IWV8 1755 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 FKBP8Q14318 412 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 STK31Q9BXU1 1019 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 KCPQ6ZWJ8 1503 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 BRWD3Q6RI45 1802 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 SLC4A2P04920 1241 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 ZKSCAN2Q63HK3 967 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 KIF16BQ96L93 1317 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 IPO8O15397 1037 aaKnown RBP22.48■■□□□ 1.19
UPF3A-206ENST00000480362 C20orf194Q5TEA3 1177 aa22.48■■□□□ 1.19
UPF3A-206ENST00000480362 RBM42Q9BTD8 480 aaKnown RBP22.48■■□□□ 1.19
UPF3A-206ENST00000480362 USP16Q9Y5T5 823 aa22.48■■□□□ 1.19
UPF3A-206ENST00000480362 C5P01031 1676 aa22.47■■□□□ 1.19
UPF3A-206ENST00000480362 FAM196AQ6ZSG2 479 aa22.46■■□□□ 1.19
UPF3A-206ENST00000480362 TNNQ9UQP3 1299 aa22.46■■□□□ 1.19
UPF3A-206ENST00000480362 PDE3AQ14432 1141 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 PTF1AQ7RTS3 328 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 VSIG10Q8N0Z9 540 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 ARHGAP45Q92619 1136 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 SMARCC1Q92922 1105 aaPredicted RBP22.45■■□□□ 1.18
UPF3A-206ENST00000480362 CHPF2Q9P2E5 772 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 NHSQ6T4R5 1651 aa22.44■■□□□ 1.18
UPF3A-206ENST00000480362 ATF7IPQ6VMQ6 1270 aa22.44■■□□□ 1.18
UPF3A-206ENST00000480362 G2E3Q7L622 706 aa22.44■■□□□ 1.18
UPF3A-206ENST00000480362 DBF4Q9UBU7 674 aaPredicted RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms