RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ATP10BO94823 1461 aa25.33■■□□□ 1.65
SDF4-206ENST00000478938 IL16Q14005 1332 aa25.33■■□□□ 1.65
SDF4-206ENST00000478938 SPHKAPQ2M3C7 1700 aa25.33■■□□□ 1.65
SDF4-206ENST00000478938 SLFNL1Q499Z3 407 aa25.33■■□□□ 1.65
SDF4-206ENST00000478938 MMP14P50281 582 aa25.33■■□□□ 1.64
SDF4-206ENST00000478938 GTF2A1P52655 376 aaPredicted RBP25.33■■□□□ 1.64
SDF4-206ENST00000478938 ERO1AQ96HE7 468 aa25.33■■□□□ 1.64
SDF4-206ENST00000478938 POLKQ9UBT6 870 aa25.33■■□□□ 1.64
SDF4-206ENST00000478938 LCMT1Q9UIC8 334 aa25.33■■□□□ 1.64
SDF4-206ENST00000478938 FHOD1Q9Y613 1164 aa25.33■■□□□ 1.64
SDF4-206ENST00000478938 PSEN1P49768 467 aa25.32■■□□□ 1.64
SDF4-206ENST00000478938 BMS1Q14692 1282 aaKnown RBP25.32■■□□□ 1.64
SDF4-206ENST00000478938 CACTINQ8WUQ7 758 aaKnown RBP25.32■■□□□ 1.64
SDF4-206ENST00000478938 UPF3BQ9BZI7 483 aaKnown RBP25.32■■□□□ 1.64
SDF4-206ENST00000478938 PTPRTO14522 1441 aa25.32■■□□□ 1.64
SDF4-206ENST00000478938 CFAP70Q5T0N1 1121 aa25.32■■□□□ 1.64
SDF4-206ENST00000478938 HDAC5Q9UQL6 1122 aa25.32■■□□□ 1.64
SDF4-206ENST00000478938 PIK3R4Q99570 1358 aa25.31■■□□□ 1.64
SDF4-206ENST00000478938 CCDC192P0DO97 292 aa25.31■■□□□ 1.64
SDF4-206ENST00000478938 KRBA2Q6ZNG9 492 aa25.31■■□□□ 1.64
SDF4-206ENST00000478938 FAM200AQ8TCP9 573 aa25.31■■□□□ 1.64
SDF4-206ENST00000478938 MRPL50Q8N5N7 158 aaKnown RBP25.3■■□□□ 1.64
SDF4-206ENST00000478938 POLR3GO15318 223 aaPredicted RBP25.3■■□□□ 1.64
SDF4-206ENST00000478938 KNDC1Q76NI1 1749 aa25.29■■□□□ 1.64
SDF4-206ENST00000478938 PTPRCP08575 1304 aa25.29■■□□□ 1.64
SDF4-206ENST00000478938 PLA2G4AP47712 749 aa25.29■■□□□ 1.64
SDF4-206ENST00000478938 RTL1A6NKG5 1358 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 PTCH1Q13635 1447 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 MYO1CO00159 1063 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 SIRT1Q96EB6 747 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 TRIM5Q9C035 493 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 CCDC144BQ3MJ40 725 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 MUM1L1Q5H9M0 696 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 CCDC144CPQ8IYA2 1237 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 ABCC4O15439 1325 aa25.28■■□□□ 1.64
SDF4-206ENST00000478938 ABCA8O94911 1581 aa25.27■■□□□ 1.64
SDF4-206ENST00000478938 PNMA6AP0CW24 399 aaPredicted RBP25.27■■□□□ 1.64
SDF4-206ENST00000478938 ZSCAN22P10073 491 aaPredicted RBP25.27■■□□□ 1.64
SDF4-206ENST00000478938 BRD2P25440 801 aaKnown RBP25.27■■□□□ 1.64
SDF4-206ENST00000478938 ZNF75DP51815 510 aa25.27■■□□□ 1.64
SDF4-206ENST00000478938 MYCNP04198 464 aaPredicted RBP25.26■■□□□ 1.63
SDF4-206ENST00000478938 ST5P78524 1137 aa25.26■■□□□ 1.63
SDF4-206ENST00000478938 MRVI1Q9Y6F6 885 aa25.26■■□□□ 1.63
SDF4-206ENST00000478938 H2AFXP16104 143 aaPredicted RBP25.26■■□□□ 1.63
SDF4-206ENST00000478938 PTPN14Q15678 1187 aa25.26■■□□□ 1.63
SDF4-206ENST00000478938 SAMD9LQ8IVG5 1584 aa25.26■■□□□ 1.63
SDF4-206ENST00000478938 ELL2O00472 640 aaPredicted RBP25.25■■□□□ 1.63
SDF4-206ENST00000478938 RGS12O14924 1447 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 SLU7O95391 586 aaKnown RBP25.25■■□□□ 1.63
SDF4-206ENST00000478938 CLCN6P51797 869 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 BRPF1P55201 1214 aaPredicted RBP25.25■■□□□ 1.63
SDF4-206ENST00000478938 LRRFIP2Q9Y608 721 aaKnown RBP25.25■■□□□ 1.63
SDF4-206ENST00000478938 PRR29P0C7W0 189 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 CASQ1P31415 396 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 ERCC6LQ2NKX8 1250 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 ICE2Q659A1 982 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 TXLNBQ8N3L3 684 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 EXOC6BQ9Y2D4 811 aa25.25■■□□□ 1.63
SDF4-206ENST00000478938 ARID5BQ14865 1188 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 TSPYL6Q8N831 410 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 CCDC191Q8NCU4 936 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 MAST1Q9Y2H9 1570 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 TRAPPC8Q9Y2L5 1435 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 CAMK4Q16566 473 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 NYAP1Q6ZVC0 841 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 PLA2G4DQ86XP0 818 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 LRRN4CLQ8ND94 238 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 SMARCE1Q969G3 411 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 CHMP3Q9Y3E7 222 aa25.24■■□□□ 1.63
SDF4-206ENST00000478938 TYRO3Q06418 890 aa25.23■■□□□ 1.63
SDF4-206ENST00000478938 ARHGAP45Q92619 1136 aa25.23■■□□□ 1.63
SDF4-206ENST00000478938 CLIP2Q9UDT6 1046 aa25.23■■□□□ 1.63
SDF4-206ENST00000478938 TEX35Q5T0J7 233 aa25.23■■□□□ 1.63
SDF4-206ENST00000478938 CBX8Q9HC52 389 aa25.23■■□□□ 1.63
SDF4-206ENST00000478938 TRMT1Q9NXH9 659 aaKnown RBP25.23■■□□□ 1.63
SDF4-206ENST00000478938 CCDC171Q6TFL3 1326 aa25.22■■□□□ 1.63
SDF4-206ENST00000478938 DTNBO60941 627 aa25.22■■□□□ 1.63
SDF4-206ENST00000478938 MYOM2P54296 1465 aa25.21■■□□□ 1.63
SDF4-206ENST00000478938 VAMP4O75379 141 aa25.21■■□□□ 1.63
SDF4-206ENST00000478938 TOMM22Q9NS69 142 aa25.21■■□□□ 1.63
SDF4-206ENST00000478938 F13A1P00488 732 aa25.21■■□□□ 1.63
SDF4-206ENST00000478938 DNM1Q05193 864 aaKnown RBP25.21■■□□□ 1.63
SDF4-206ENST00000478938 DHX37Q8IY37 1157 aaKnown RBP25.21■■□□□ 1.63
SDF4-206ENST00000478938 RAD50Q92878 1312 aa25.2■■□□□ 1.63
SDF4-206ENST00000478938 MCCP23508 829 aa25.2■■□□□ 1.63
SDF4-206ENST00000478938 ANO6Q4KMQ2 910 aa25.2■■□□□ 1.63
SDF4-206ENST00000478938 ATG3Q9NT62 314 aa25.2■■□□□ 1.63
SDF4-206ENST00000478938 HTATSF1O43719 755 aaKnown RBP25.2■■□□□ 1.62
SDF4-206ENST00000478938 STX6O43752 255 aa25.2■■□□□ 1.62
SDF4-206ENST00000478938 APPP05067 770 aa25.2■■□□□ 1.62
SDF4-206ENST00000478938 SYT1P21579 422 aa25.2■■□□□ 1.62
SDF4-206ENST00000478938 ZSCAN26Q16670 478 aa25.2■■□□□ 1.62
SDF4-206ENST00000478938 ANO2Q9NQ90 1003 aa25.2■■□□□ 1.62
SDF4-206ENST00000478938 CKAP2LQ8IYA6 745 aa25.19■■□□□ 1.62
SDF4-206ENST00000478938 ESYT1Q9BSJ8 1104 aa25.19■■□□□ 1.62
SDF4-206ENST00000478938 TSHZ3Q63HK5 1081 aa25.19■■□□□ 1.62
SDF4-206ENST00000478938 LARP6Q9BRS8 491 aaKnown RBP25.18■■□□□ 1.62
SDF4-206ENST00000478938 MAP3K11Q16584 847 aa25.18■■□□□ 1.62
SDF4-206ENST00000478938 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.17■■□□□ 1.62
SDF4-206ENST00000478938 RNF20Q5VTR2 975 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms