RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	NFATC2IP	Q8NCF5	419 aa		32.14	■■■□□ 2.74
CPNE1-223	ENST00000475146	C4B	P0C0L5	1744 aa		32.13	■■■□□ 2.73
CPNE1-223	ENST00000475146	ATP6V1A	P38606	617 aa		32.13	■■■□□ 2.73
CPNE1-223	ENST00000475146	RSPH6A	Q9H0K4	717 aa		32.13	■■■□□ 2.73
CPNE1-223	ENST00000475146	RNMT	O43148	476 aa	Known RBP	32.12	■■■□□ 2.73
CPNE1-223	ENST00000475146	GAS2L2	Q8NHY3	880 aa		32.12	■■■□□ 2.73
CPNE1-223	ENST00000475146	AK7	Q96M32	723 aa		32.12	■■■□□ 2.73
CPNE1-223	ENST00000475146	RBM42	Q9BTD8	480 aa	Known RBP	32.12	■■■□□ 2.73
CPNE1-223	ENST00000475146	LGR6	Q9HBX8	967 aa		32.12	■■■□□ 2.73
CPNE1-223	ENST00000475146	MSH5	O43196	834 aa		32.11	■■■□□ 2.73
CPNE1-223	ENST00000475146	RALBP1	Q15311	655 aa		32.11	■■■□□ 2.73
CPNE1-223	ENST00000475146	PTGER2	P43116	358 aa		32.1	■■■□□ 2.73
CPNE1-223	ENST00000475146	ITPK1	Q13572	414 aa		32.1	■■■□□ 2.73
CPNE1-223	ENST00000475146	LINC00116	Q8NCU8	138 aa		32.1	■■■□□ 2.73
CPNE1-223	ENST00000475146	SLC16A10	Q8TF71	515 aa		32.09	■■■□□ 2.73
CPNE1-223	ENST00000475146	SLC52A2	Q9HAB3	445 aa		32.09	■■■□□ 2.73
CPNE1-223	ENST00000475146	MAP3K5	Q99683	1374 aa		32.08	■■■□□ 2.73
CPNE1-223	ENST00000475146	MRC1	P22897	1456 aa		32.08	■■■□□ 2.73
CPNE1-223	ENST00000475146	COL23A1	Q86Y22	540 aa	Predicted RBP	32.07	■■■□□ 2.72
CPNE1-223	ENST00000475146	VIRMA	Q69YN4	1812 aa	Known RBP	32.06	■■■□□ 2.72
CPNE1-223	ENST00000475146	PHACTR3	Q96KR7	559 aa		32.06	■■■□□ 2.72
CPNE1-223	ENST00000475146	GNAT3	A8MTJ3	354 aa		32.05	■■■□□ 2.72
CPNE1-223	ENST00000475146	PTCD1	O75127	700 aa	Known RBP	32.05	■■■□□ 2.72
CPNE1-223	ENST00000475146	FCHSD2	O94868	740 aa		32.05	■■■□□ 2.72
CPNE1-223	ENST00000475146	ADAMTS7	Q9UKP4	1686 aa		32.05	■■■□□ 2.72
CPNE1-223	ENST00000475146	FLAD1	Q8NFF5	587 aa		32.04	■■■□□ 2.72
CPNE1-223	ENST00000475146	SLC4A9	Q96Q91	983 aa		32.04	■■■□□ 2.72
CPNE1-223	ENST00000475146	PHF14	O94880	888 aa		32.03	■■■□□ 2.72
CPNE1-223	ENST00000475146	SGIP1	Q9BQI5	828 aa		32.03	■■■□□ 2.72
CPNE1-223	ENST00000475146	ZNF831	Q5JPB2	1677 aa		32.02	■■■□□ 2.72
CPNE1-223	ENST00000475146	GNPAT	O15228	680 aa		32.01	■■■□□ 2.71
CPNE1-223	ENST00000475146	UBR3	Q6ZT12	1888 aa		32	■■■□□ 2.71
CPNE1-223	ENST00000475146	AMIGO3	Q86WK7	504 aa		32	■■■□□ 2.71
CPNE1-223	ENST00000475146	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32	■■■□□ 2.71
CPNE1-223	ENST00000475146	POLD1	P28340	1107 aa		31.99	■■■□□ 2.71
CPNE1-223	ENST00000475146	SMIM5	Q71RC9	77 aa		31.99	■■■□□ 2.71
CPNE1-223	ENST00000475146	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	31.98	■■■□□ 2.71
CPNE1-223	ENST00000475146	TEF	Q10587	303 aa		31.98	■■■□□ 2.71
CPNE1-223	ENST00000475146	SLC39A6	Q13433	755 aa		31.98	■■■□□ 2.71
CPNE1-223	ENST00000475146	IL17RE	Q8NFR9	667 aa		31.98	■■■□□ 2.71
CPNE1-223	ENST00000475146	ARX	Q96QS3	562 aa		31.98	■■■□□ 2.71
CPNE1-223	ENST00000475146	NEFM	P07197	916 aa		31.97	■■■□□ 2.71
CPNE1-223	ENST00000475146	SSFA2	P28290	1259 aa		31.97	■■■□□ 2.71
CPNE1-223	ENST00000475146	MSL1	Q68DK7	614 aa		31.97	■■■□□ 2.71
CPNE1-223	ENST00000475146	COL5A3	P25940	1745 aa	Predicted RBP	31.95	■■■□□ 2.71
CPNE1-223	ENST00000475146	CNTNAP4	Q9C0A0	1308 aa		31.94	■■■□□ 2.7
CPNE1-223	ENST00000475146	COL24A1	Q17RW2	1714 aa		31.93	■■■□□ 2.7
CPNE1-223	ENST00000475146	RTF1	Q92541	710 aa	Known RBP	31.93	■■■□□ 2.7
CPNE1-223	ENST00000475146	FHDC1	Q9C0D6	1143 aa	Predicted RBP	31.93	■■■□□ 2.7
CPNE1-223	ENST00000475146	RC3H1	Q5TC82	1133 aa	Known RBP	31.92	■■■□□ 2.7
CPNE1-223	ENST00000475146	RTCB	Q9Y3I0	505 aa	Known RBP	31.92	■■■□□ 2.7
CPNE1-223	ENST00000475146	TJP1	Q07157	1748 aa		31.92	■■■□□ 2.7
CPNE1-223	ENST00000475146	TTC5	Q8N0Z6	440 aa		31.91	■■■□□ 2.7
CPNE1-223	ENST00000475146	KCP	Q6ZWJ8	1503 aa		31.9	■■■□□ 2.7
CPNE1-223	ENST00000475146	KLHL34	Q8N239	644 aa		31.9	■■■□□ 2.7
CPNE1-223	ENST00000475146	CEMIP	Q8WUJ3	1361 aa		31.9	■■■□□ 2.7
CPNE1-223	ENST00000475146	CIC	Q96RK0	1608 aa	Predicted RBP	31.89	■■■□□ 2.7
CPNE1-223	ENST00000475146	CRKL	P46109	303 aa	Known RBP	31.88	■■■□□ 2.69
CPNE1-223	ENST00000475146	DNAJC10	Q8IXB1	793 aa		31.88	■■■□□ 2.69
CPNE1-223	ENST00000475146	PNN	Q9H307	717 aa	Known RBP	31.88	■■■□□ 2.69
CPNE1-223	ENST00000475146	PRKRIP1	Q9H875	184 aa	Predicted RBP	31.88	■■■□□ 2.69
CPNE1-223	ENST00000475146	SIPA1L3	O60292	1781 aa	Predicted RBP	31.87	■■■□□ 2.69
CPNE1-223	ENST00000475146	MAPK8IP3	Q9UPT6	1336 aa		31.87	■■■□□ 2.69
CPNE1-223	ENST00000475146	ZNF316	A6NFI3	1004 aa	Predicted RBP	31.87	■■■□□ 2.69
CPNE1-223	ENST00000475146	MCM10	Q7L590	875 aa		31.87	■■■□□ 2.69
CPNE1-223	ENST00000475146	SYT17	Q9BSW7	474 aa		31.87	■■■□□ 2.69
CPNE1-223	ENST00000475146	RPS6KA4	O75676	772 aa		31.86	■■■□□ 2.69
CPNE1-223	ENST00000475146	TRAPPC3L	Q5T215	181 aa		31.86	■■■□□ 2.69
CPNE1-223	ENST00000475146	PLEKHF1	Q96S99	279 aa		31.86	■■■□□ 2.69
CPNE1-223	ENST00000475146	UBR2	Q8IWV8	1755 aa		31.85	■■■□□ 2.69
CPNE1-223	ENST00000475146	MYH14	Q7Z406	1995 aa	Known RBP	31.85	■■■□□ 2.69
CPNE1-223	ENST00000475146	ADRA2B	P18089	450 aa		31.84	■■■□□ 2.69
CPNE1-223	ENST00000475146	DCTN1	Q14203	1278 aa		31.84	■■■□□ 2.69
CPNE1-223	ENST00000475146	HTATSF1	O43719	755 aa	Known RBP	31.83	■■■□□ 2.69
CPNE1-223	ENST00000475146	ZNF790	Q6PG37	636 aa		31.83	■■■□□ 2.69
CPNE1-223	ENST00000475146	BTBD11	A6QL63	1104 aa		31.82	■■■□□ 2.68
CPNE1-223	ENST00000475146	DCAF8L1	A6NGE4	600 aa		31.81	■■■□□ 2.68
CPNE1-223	ENST00000475146	VSIG10	Q8N0Z9	540 aa		31.81	■■■□□ 2.68
CPNE1-223	ENST00000475146	ARHGEF1	Q92888	912 aa	Known RBP	31.81	■■■□□ 2.68
CPNE1-223	ENST00000475146	CCDC87	Q9NVE4	849 aa		31.81	■■■□□ 2.68
CPNE1-223	ENST00000475146	NFE2L2	Q16236	605 aa		31.8	■■■□□ 2.68
CPNE1-223	ENST00000475146	INTS5	Q6P9B9	1019 aa	Known RBP	31.8	■■■□□ 2.68
CPNE1-223	ENST00000475146	ZNF496	Q96IT1	587 aa	Predicted RBP	31.8	■■■□□ 2.68
CPNE1-223	ENST00000475146	CYP19A1	P11511	503 aa	Predicted RBP	31.79	■■■□□ 2.68
CPNE1-223	ENST00000475146	RFC4	P35249	363 aa		31.79	■■■□□ 2.68
CPNE1-223	ENST00000475146	WDR43	Q15061	677 aa	Known RBP eCLIP	31.79	■■■□□ 2.68
CPNE1-223	ENST00000475146	HEG1	Q9ULI3	1381 aa		31.78	■■■□□ 2.68
CPNE1-223	ENST00000475146	DLG5	Q8TDM6	1919 aa		31.77	■■■□□ 2.68
CPNE1-223	ENST00000475146	FMNL2	Q96PY5	1086 aa		31.77	■■■□□ 2.68
CPNE1-223	ENST00000475146	KCNQ3	O43525	872 aa		31.76	■■■□□ 2.67
CPNE1-223	ENST00000475146	C4A	P0C0L4	1744 aa		31.75	■■■□□ 2.67
CPNE1-223	ENST00000475146	STARD3NL	O95772	234 aa		31.73	■■■□□ 2.67
CPNE1-223	ENST00000475146	ZBTB1	Q9Y2K1	713 aa		31.73	■■■□□ 2.67
CPNE1-223	ENST00000475146	SOS1	Q07889	1333 aa	Predicted RBP	31.73	■■■□□ 2.67
CPNE1-223	ENST00000475146	GYS1	P13807	737 aa		31.71	■■■□□ 2.67
CPNE1-223	ENST00000475146	TAF7	Q15545	349 aa	Predicted RBP	31.71	■■■□□ 2.67
CPNE1-223	ENST00000475146	CCDC146	Q8IYE0	955 aa		31.71	■■■□□ 2.67
CPNE1-223	ENST00000475146	NLGN1	Q8N2Q7	840 aa		31.71	■■■□□ 2.67
CPNE1-223	ENST00000475146	TEX13A	Q9BXU3	409 aa	Predicted RBP	31.71	■■■□□ 2.67
CPNE1-223	ENST00000475146	SRP68	Q9UHB9	627 aa	Known RBP	31.71	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms