RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 HMGB2P26583 209 aaKnown RBP10□□□□□ -0.81
HDAC3-206ENST00000471968 SSFA2P28290 1259 aa10□□□□□ -0.81
HDAC3-206ENST00000471968 LDHDQ86WU2 507 aa10□□□□□ -0.81
HDAC3-206ENST00000471968 CCDC61Q9Y6R9 512 aa10□□□□□ -0.81
HDAC3-206ENST00000471968 ADAMTS7Q9UKP4 1686 aa9.99□□□□□ -0.81
HDAC3-206ENST00000471968 C4BP0C0L5 1744 aa9.99□□□□□ -0.81
HDAC3-206ENST00000471968 CYP4F22Q6NT55 531 aa9.99□□□□□ -0.81
HDAC3-206ENST00000471968 CDK19Q9BWU1 502 aa9.99□□□□□ -0.81
HDAC3-206ENST00000471968 MKI67P46013 3256 aaKnown RBP9.99□□□□□ -0.81
HDAC3-206ENST00000471968 THSD7BQ9C0I4 1608 aa9.99□□□□□ -0.81
HDAC3-206ENST00000471968 TIAM2Q8IVF5 1701 aa9.99□□□□□ -0.81
HDAC3-206ENST00000471968 CA12O43570 354 aa9.98□□□□□ -0.81
HDAC3-206ENST00000471968 ITGAEP38570 1179 aa9.98□□□□□ -0.81
HDAC3-206ENST00000471968 ECE1P42892 770 aa9.98□□□□□ -0.81
HDAC3-206ENST00000471968 AOC2O75106 756 aa9.97□□□□□ -0.81
HDAC3-206ENST00000471968 CHRNA5P30532 468 aa9.97□□□□□ -0.81
HDAC3-206ENST00000471968 APLP2Q06481 763 aa9.97□□□□□ -0.81
HDAC3-206ENST00000471968 UBR3Q6ZT12 1888 aa9.97□□□□□ -0.81
HDAC3-206ENST00000471968 PALLDQ8WX93 1383 aa9.97□□□□□ -0.81
HDAC3-206ENST00000471968 KCNH5Q8NCM2 988 aa9.96□□□□□ -0.82
HDAC3-206ENST00000471968 PARP3Q9Y6F1 533 aa9.96□□□□□ -0.82
HDAC3-206ENST00000471968 TAF1LQ8IZX4 1826 aa9.96□□□□□ -0.82
HDAC3-206ENST00000471968 GNPATO15228 680 aa9.95□□□□□ -0.82
HDAC3-206ENST00000471968 DDNO94850 711 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-206ENST00000471968 TMF1P82094 1093 aa9.95□□□□□ -0.82
HDAC3-206ENST00000471968 EAPPQ56P03 285 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-206ENST00000471968 CLEC11AQ9Y240 323 aa9.95□□□□□ -0.82
HDAC3-206ENST00000471968 MNX1P50219 401 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-206ENST00000471968 NLGN1Q8N2Q7 840 aa9.94□□□□□ -0.82
HDAC3-206ENST00000471968 MAP2K2P36507 400 aa9.93□□□□□ -0.82
HDAC3-206ENST00000471968 TAF1DQ9H5J8 278 aaPredicted RBP9.93□□□□□ -0.82
HDAC3-206ENST00000471968 C4AP0C0L4 1744 aa9.93□□□□□ -0.82
HDAC3-206ENST00000471968 ADGRB1O14514 1584 aa9.92□□□□□ -0.82
HDAC3-206ENST00000471968 IQCA1LA6NCM1 817 aa9.92□□□□□ -0.82
HDAC3-206ENST00000471968 ERFEQ4G0M1 354 aa9.92□□□□□ -0.82
HDAC3-206ENST00000471968 MAP1SQ66K74 1059 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-206ENST00000471968 CNTROBQ8N137 903 aa9.92□□□□□ -0.82
HDAC3-206ENST00000471968 LINC00116Q8NCU8 138 aa9.92□□□□□ -0.82
HDAC3-206ENST00000471968 ANKRD24Q8TF21 1146 aa9.92□□□□□ -0.82
HDAC3-206ENST00000471968 SLC4A1APQ9BWU0 796 aaKnown RBP9.92□□□□□ -0.82
HDAC3-206ENST00000471968 COLQQ9Y215 455 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-206ENST00000471968 MEGF6O75095 1541 aa9.92□□□□□ -0.82
HDAC3-206ENST00000471968 NFKBIEO00221 500 aa9.91□□□□□ -0.82
HDAC3-206ENST00000471968 NBPF1Q3BBV0 1214 aa9.91□□□□□ -0.82
HDAC3-206ENST00000471968 UNC80Q8N2C7 3258 aa9.91□□□□□ -0.82
HDAC3-206ENST00000471968 TRIOBPQ9H2D6 2365 aa9.9□□□□□ -0.82
HDAC3-206ENST00000471968 BRPF1P55201 1214 aaPredicted RBP9.9□□□□□ -0.82
HDAC3-206ENST00000471968 DDX21Q9NR30 783 aaKnown RBP eCLIP9.9□□□□□ -0.82
HDAC3-206ENST00000471968 CIAPIN1Q6FI81 312 aa9.89□□□□□ -0.83
HDAC3-206ENST00000471968 MPRIPQ6WCQ1 1025 aa9.89□□□□□ -0.83
HDAC3-206ENST00000471968 HPS5Q9UPZ3 1129 aa9.89□□□□□ -0.83
HDAC3-206ENST00000471968 NFAT5O94916 1531 aa9.88□□□□□ -0.83
HDAC3-206ENST00000471968 GYS1P13807 737 aa9.88□□□□□ -0.83
HDAC3-206ENST00000471968 TRAPPC3LQ5T215 181 aa9.88□□□□□ -0.83
HDAC3-206ENST00000471968 ZCRB1Q8TBF4 217 aaKnown RBP9.88□□□□□ -0.83
HDAC3-206ENST00000471968 BRCA2P51587 3418 aa9.88□□□□□ -0.83
HDAC3-206ENST00000471968 CCDC88AQ3V6T2 1871 aa9.87□□□□□ -0.83
HDAC3-206ENST00000471968 VCANP13611 3396 aa9.87□□□□□ -0.83
HDAC3-206ENST00000471968 FMR1Q06787 632 aaKnown RBP eCLIP9.87□□□□□ -0.83
HDAC3-206ENST00000471968 SMARCC1Q92922 1105 aaPredicted RBP9.87□□□□□ -0.83
HDAC3-206ENST00000471968 RANBP2P49792 3224 aaKnown RBP9.86□□□□□ -0.83
HDAC3-206ENST00000471968 SRPK2P78362 688 aaKnown RBP9.86□□□□□ -0.83
HDAC3-206ENST00000471968 COL25A1Q9BXS0 654 aaPredicted RBP9.86□□□□□ -0.83
HDAC3-206ENST00000471968 TLL2Q9Y6L7 1015 aa9.86□□□□□ -0.83
HDAC3-206ENST00000471968 LOC102724428A0A0B4J2F2 783 aa9.85□□□□□ -0.83
HDAC3-206ENST00000471968 SIK1P57059 783 aa9.85□□□□□ -0.83
HDAC3-206ENST00000471968 CTU1Q7Z7A3 348 aaKnown RBP9.85□□□□□ -0.83
HDAC3-206ENST00000471968 L3MBTL3Q96JM7 780 aaPredicted RBP9.85□□□□□ -0.83
HDAC3-206ENST00000471968 RTCBQ9Y3I0 505 aaKnown RBP9.85□□□□□ -0.83
HDAC3-206ENST00000471968 EPHX2P34913 555 aa9.84□□□□□ -0.83
HDAC3-206ENST00000471968 ITPK1Q13572 414 aa9.84□□□□□ -0.83
HDAC3-206ENST00000471968 ARHGEF1Q92888 912 aaKnown RBP9.84□□□□□ -0.83
HDAC3-206ENST00000471968 CABP1Q9NZU7 370 aa9.84□□□□□ -0.83
HDAC3-206ENST00000471968 HACL1Q9UJ83 578 aa9.84□□□□□ -0.83
HDAC3-206ENST00000471968 RFC4P35249 363 aa9.83□□□□□ -0.84
HDAC3-206ENST00000471968 DDR1Q08345 913 aa9.83□□□□□ -0.84
HDAC3-206ENST00000471968 CST9Q5W186 159 aa9.83□□□□□ -0.84
HDAC3-206ENST00000471968 TTLL6Q8N841 843 aa9.83□□□□□ -0.84
HDAC3-206ENST00000471968 LTV1Q96GA3 475 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-206ENST00000471968 CABP2Q9NPB3 220 aa9.83□□□□□ -0.84
HDAC3-206ENST00000471968 ADAMTSL1Q8N6G6 1762 aa9.83□□□□□ -0.84
HDAC3-206ENST00000471968 TTC21BQ7Z4L5 1316 aa9.82□□□□□ -0.84
HDAC3-206ENST00000471968 SCN4AP35499 1836 aa9.82□□□□□ -0.84
HDAC3-206ENST00000471968 ATP6V1AP38606 617 aa9.82□□□□□ -0.84
HDAC3-206ENST00000471968 PNMA8AQ86V59 439 aaPredicted RBP9.82□□□□□ -0.84
HDAC3-206ENST00000471968 SPTBN5Q9NRC6 3674 aaKnown RBP9.81□□□□□ -0.84
HDAC3-206ENST00000471968 ZIC5Q96T25 663 aa9.81□□□□□ -0.84
HDAC3-206ENST00000471968 TRAF5O00463 557 aa9.8□□□□□ -0.84
HDAC3-206ENST00000471968 SAPCD2Q86UD0 394 aa9.8□□□□□ -0.84
HDAC3-206ENST00000471968 PRDM6Q9NQX0 595 aa9.8□□□□□ -0.84
HDAC3-206ENST00000471968 RNF123Q5XPI4 1314 aa9.8□□□□□ -0.84
HDAC3-206ENST00000471968 CEP290O15078 2479 aa9.79□□□□□ -0.84
HDAC3-206ENST00000471968 ADRA2BP18089 450 aa9.79□□□□□ -0.84
HDAC3-206ENST00000471968 FKBP8Q14318 412 aa9.79□□□□□ -0.84
HDAC3-206ENST00000471968 PIGBQ92521 554 aa9.79□□□□□ -0.84
HDAC3-206ENST00000471968 TAOK3Q9H2K8 898 aa9.79□□□□□ -0.84
HDAC3-206ENST00000471968 DICER1Q9UPY3 1922 aaKnown RBP9.78□□□□□ -0.84
HDAC3-206ENST00000471968 C21orf2O43822 256 aa9.78□□□□□ -0.84
HDAC3-206ENST00000471968 AKAP4Q5JQC9 854 aa9.78□□□□□ -0.84
HDAC3-206ENST00000471968 SAGE1Q9NXZ1 904 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms