RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 NASPP49321 788 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-220ENST00000471834 GNAI1P63096 354 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 CHD1O14646 1710 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 ZSCAN23Q3MJ62 389 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 CEMIPQ8WUJ3 1361 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 PTPRCP08575 1304 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 SSFA2P28290 1259 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 SARM1Q6SZW1 724 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 HSCBQ8IWL3 235 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 MAP3K5Q99683 1374 aa6.56□□□□□ -1.36
SYNE1-220ENST00000471834 NEDD4P46934 1319 aa6.55□□□□□ -1.36
SYNE1-220ENST00000471834 TRIM44Q96DX7 344 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-220ENST00000471834 TPM3P06753 285 aa6.55□□□□□ -1.36
SYNE1-220ENST00000471834 HOXB7P09629 217 aa6.55□□□□□ -1.36
SYNE1-220ENST00000471834 BCL11BQ9C0K0 894 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-220ENST00000471834 HSPA4P34932 840 aa6.55□□□□□ -1.36
SYNE1-220ENST00000471834 FBXL16Q8N461 479 aa6.55□□□□□ -1.36
SYNE1-220ENST00000471834 MORC2Q9Y6X9 1032 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-220ENST00000471834 NEUROD2Q15784 382 aa6.54□□□□□ -1.36
SYNE1-220ENST00000471834 TUBB4AP04350 444 aa6.54□□□□□ -1.36
SYNE1-220ENST00000471834 RBM6P78332 1123 aaKnown RBP6.54□□□□□ -1.36
SYNE1-220ENST00000471834 POLA2Q14181 598 aa6.54□□□□□ -1.36
SYNE1-220ENST00000471834 FTSJ3Q8IY81 847 aaKnown RBP6.54□□□□□ -1.36
SYNE1-220ENST00000471834 MORC1Q86VD1 984 aa6.54□□□□□ -1.36
SYNE1-220ENST00000471834 SSH3Q8TE77 659 aa6.54□□□□□ -1.36
SYNE1-220ENST00000471834 CDK11BP21127 795 aaKnown RBP6.54□□□□□ -1.36
SYNE1-220ENST00000471834 CEP85Q6P2H3 762 aa6.54□□□□□ -1.36
SYNE1-220ENST00000471834 NYAP1Q6ZVC0 841 aa6.54□□□□□ -1.36
SYNE1-220ENST00000471834 EVCP57679 992 aa6.53□□□□□ -1.36
SYNE1-220ENST00000471834 AGXT2Q9BYV1 514 aa6.53□□□□□ -1.36
SYNE1-220ENST00000471834 ADAMTS13Q76LX8 1427 aa6.53□□□□□ -1.36
SYNE1-220ENST00000471834 PRIM1P49642 420 aaKnown RBP6.53□□□□□ -1.36
SYNE1-220ENST00000471834 CCDC39Q9UFE4 941 aa6.53□□□□□ -1.36
SYNE1-220ENST00000471834 COL22A1Q8NFW1 1626 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-220ENST00000471834 HTATSF1O43719 755 aaKnown RBP6.53□□□□□ -1.36
SYNE1-220ENST00000471834 CASC1Q6TDU7 716 aa6.53□□□□□ -1.36
SYNE1-220ENST00000471834 PDCL2Q8N4E4 241 aa6.53□□□□□ -1.36
SYNE1-220ENST00000471834 TDRD7Q8NHU6 1098 aaKnown RBP6.53□□□□□ -1.36
SYNE1-220ENST00000471834 NAP1L5Q96NT1 182 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-220ENST00000471834 DNTTIP2Q5QJE6 756 aaKnown RBP6.53□□□□□ -1.36
SYNE1-220ENST00000471834 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-220ENST00000471834 DDX41Q9UJV9 622 aaKnown RBP6.52□□□□□ -1.37
SYNE1-220ENST00000471834 RICTORQ6R327 1708 aa6.52□□□□□ -1.37
SYNE1-220ENST00000471834 G3V3G9 751 aa6.52□□□□□ -1.37
SYNE1-220ENST00000471834 PTMAP06454 111 aaKnown RBP6.52□□□□□ -1.37
SYNE1-220ENST00000471834 DCAF8Q5TAQ9 597 aa6.52□□□□□ -1.37
SYNE1-220ENST00000471834 USPL1Q5W0Q7 1092 aa6.52□□□□□ -1.37
SYNE1-220ENST00000471834 CAMTA1Q9Y6Y1 1673 aa6.52□□□□□ -1.37
SYNE1-220ENST00000471834 IGSF1Q8N6C5 1336 aa6.52□□□□□ -1.37
SYNE1-220ENST00000471834 LETM1O95202 739 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-220ENST00000471834 SLIT1O75093 1534 aa6.52□□□□□ -1.37
SYNE1-220ENST00000471834 ZBTB22O15209 634 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 REC8O95072 547 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-220ENST00000471834 LMOD3Q0VAK6 560 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 CCDC146Q8IYE0 955 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 NPHP4O75161 1426 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-220ENST00000471834 MRFAP1L1Q96HT8 127 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 RBM42Q9BTD8 480 aaKnown RBP6.51□□□□□ -1.37
SYNE1-220ENST00000471834 ST3GAL1Q11201 340 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 CTNNA3Q9UI47 895 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 FAM237AA0A1B0GTK4 181 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 PDE1AP54750 535 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 NPHP3Q7Z494 1330 aa6.51□□□□□ -1.37
SYNE1-220ENST00000471834 NOB1Q9ULX3 412 aaKnown RBP6.5□□□□□ -1.37
SYNE1-220ENST00000471834 PKP1Q13835 747 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 PHACTR3Q96KR7 559 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 MBIPQ9NS73 344 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 NSFL1CQ9UNZ2 370 aaKnown RBP6.5□□□□□ -1.37
SYNE1-220ENST00000471834 SLFN14P0C7P3 912 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 MUM1L1Q5H9M0 696 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 TAF3Q5VWG9 929 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 TERF2IPQ9NYB0 399 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 TSPOAP1O95153 1857 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 TTC21AQ8NDW8 1320 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 DIAPH1O60610 1272 aaKnown RBP6.5□□□□□ -1.37
SYNE1-220ENST00000471834 H2AFXP16104 143 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-220ENST00000471834 CYB5RLQ6IPT4 315 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 IQUBQ8NA54 791 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 NAP1L2Q9ULW6 460 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-220ENST00000471834 SDSP20132 328 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 PLCB2Q00722 1185 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 UTYO14607 1347 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 MAP3K9P80192 1104 aa6.5□□□□□ -1.37
SYNE1-220ENST00000471834 MAP3K15Q6ZN16 1313 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 ATP8B1O43520 1251 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 VSIG10Q8N0Z9 540 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 RIMS1Q86UR5 1692 aaKnown RBP6.49□□□□□ -1.37
SYNE1-220ENST00000471834 GOLGA6L22H0YM25 854 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 AP5Z1O43299 807 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 SMC4Q9NTJ3 1288 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.49□□□□□ -1.37
SYNE1-220ENST00000471834 ANKARQ7Z5J8 1434 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 TMX3Q96JJ7 454 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 CDC25BP30305 580 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 TSR2Q969E8 191 aaKnown RBP6.49□□□□□ -1.37
SYNE1-220ENST00000471834 KIF1BPQ96EK5 621 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 SGSM2O43147 1006 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 TSPYL6Q8N831 410 aa6.49□□□□□ -1.37
SYNE1-220ENST00000471834 SRCIN1Q9C0H9 1055 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms