RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 SLC4A2P04920 1241 aa23.07■■□□□ 1.28
SMC4-211ENST00000469858 BTG4Q9NY30 223 aa23.07■■□□□ 1.28
SMC4-211ENST00000469858 ABCC4O15439 1325 aa23.07■■□□□ 1.28
SMC4-211ENST00000469858 SOS1Q07889 1333 aaPredicted RBP23.06■■□□□ 1.28
SMC4-211ENST00000469858 CYP27B1O15528 508 aa23.05■■□□□ 1.28
SMC4-211ENST00000469858 KCNQ3O43525 872 aa23.05■■□□□ 1.28
SMC4-211ENST00000469858 PCDHB15Q9Y5E8 787 aa23.05■■□□□ 1.28
SMC4-211ENST00000469858 CACNA1FO60840 1977 aa23.05■■□□□ 1.28
SMC4-211ENST00000469858 EIF4A1P60842 406 aaKnown RBP23.05■■□□□ 1.28
SMC4-211ENST00000469858 NECTIN2Q92692 538 aa23.05■■□□□ 1.28
SMC4-211ENST00000469858 STK31Q9BXU1 1019 aa23.05■■□□□ 1.28
SMC4-211ENST00000469858 UBAP1LF5GYI3 381 aa23.04■■□□□ 1.28
SMC4-211ENST00000469858 IGHDP01880 384 aa23.04■■□□□ 1.28
SMC4-211ENST00000469858 CCDC30Q5VVM6 783 aa23.04■■□□□ 1.28
SMC4-211ENST00000469858 AEBP2Q6ZN18 517 aaPredicted RBP23.03■■□□□ 1.28
SMC4-211ENST00000469858 PTPRCP08575 1304 aa23.03■■□□□ 1.28
SMC4-211ENST00000469858 IL2RBP14784 551 aa23.03■■□□□ 1.28
SMC4-211ENST00000469858 RGS12O14924 1447 aa23.02■■□□□ 1.28
SMC4-211ENST00000469858 USP35Q9P2H5 1018 aa23.02■■□□□ 1.28
SMC4-211ENST00000469858 ZCRB1Q8TBF4 217 aaKnown RBP23.01■■□□□ 1.27
SMC4-211ENST00000469858 DCAF5Q96JK2 942 aa23.01■■□□□ 1.27
SMC4-211ENST00000469858 SLC52A2Q9HAB3 445 aa23.01■■□□□ 1.27
SMC4-211ENST00000469858 SHANK3Q9BYB0 1731 aa23■■□□□ 1.27
SMC4-211ENST00000469858 PCDH11XQ9BZA7 1347 aa23■■□□□ 1.27
SMC4-211ENST00000469858 PCDH11YQ9BZA8 1340 aa23■■□□□ 1.27
SMC4-211ENST00000469858 PLCH1Q4KWH8 1693 aa23■■□□□ 1.27
SMC4-211ENST00000469858 HSP90AB1P08238 724 aaKnown RBP23■■□□□ 1.27
SMC4-211ENST00000469858 HDGFL1Q5TGJ6 251 aa23■■□□□ 1.27
SMC4-211ENST00000469858 G2E3Q7L622 706 aa23■■□□□ 1.27
SMC4-211ENST00000469858 ZBTB40Q9NUA8 1239 aa23■■□□□ 1.27
SMC4-211ENST00000469858 SKAP1Q86WV1 359 aa23■■□□□ 1.27
SMC4-211ENST00000469858 MRC1P22897 1456 aa22.99■■□□□ 1.27
SMC4-211ENST00000469858 ADAMTS2O95450 1211 aa22.98■■□□□ 1.27
SMC4-211ENST00000469858 HOXB7P09629 217 aa22.98■■□□□ 1.27
SMC4-211ENST00000469858 EIF2S2P20042 333 aaKnown RBP22.98■■□□□ 1.27
SMC4-211ENST00000469858 NFATC2IPQ8NCF5 419 aa22.98■■□□□ 1.27
SMC4-211ENST00000469858 ZBTB7BO15156 539 aaPredicted RBP22.97■■□□□ 1.27
SMC4-211ENST00000469858 CHMP4BQ9H444 224 aaKnown RBP22.96■■□□□ 1.27
SMC4-211ENST00000469858 RWDD1Q9H446 243 aaPredicted RBP22.96■■□□□ 1.27
SMC4-211ENST00000469858 NUTM2BA6NNL0 878 aaPredicted RBP22.95■■□□□ 1.26
SMC4-211ENST00000469858 NUTM2EB1AL46 878 aaPredicted RBP22.95■■□□□ 1.26
SMC4-211ENST00000469858 FLIIQ13045 1269 aa22.95■■□□□ 1.26
SMC4-211ENST00000469858 SLC39A6Q13433 755 aa22.95■■□□□ 1.26
SMC4-211ENST00000469858 INTS3Q68E01 1043 aaKnown RBP22.95■■□□□ 1.26
SMC4-211ENST00000469858 NUTM2AQ8IVF1 878 aaPredicted RBP22.95■■□□□ 1.26
SMC4-211ENST00000469858 ZNF790Q6PG37 636 aa22.94■■□□□ 1.26
SMC4-211ENST00000469858 DDX54Q8TDD1 881 aaKnown RBP22.94■■□□□ 1.26
SMC4-211ENST00000469858 HEG1Q9ULI3 1381 aa22.93■■□□□ 1.26
SMC4-211ENST00000469858 GIGYF1O75420 1035 aaPredicted RBP22.93■■□□□ 1.26
SMC4-211ENST00000469858 CABP4P57796 275 aa22.93■■□□□ 1.26
SMC4-211ENST00000469858 FKBP5Q13451 457 aaPredicted RBP22.93■■□□□ 1.26
SMC4-211ENST00000469858 F6X3S4 739 aa22.92■■□□□ 1.26
SMC4-211ENST00000469858 CHMP4AQ9BY43 222 aa22.92■■□□□ 1.26
SMC4-211ENST00000469858 NRAPQ86VF7 1730 aa22.92■■□□□ 1.26
SMC4-211ENST00000469858 CHPF2Q9P2E5 772 aa22.92■■□□□ 1.26
SMC4-211ENST00000469858 C5P01031 1676 aa22.91■■□□□ 1.26
SMC4-211ENST00000469858 SLC4A10Q6U841 1118 aa22.91■■□□□ 1.26
SMC4-211ENST00000469858 C1orf115Q9H7X2 142 aa22.91■■□□□ 1.26
SMC4-211ENST00000469858 WNK3Q9BYP7 1800 aa22.91■■□□□ 1.26
SMC4-211ENST00000469858 PRAMEF22A3QJZ6 481 aa22.9■■□□□ 1.26
SMC4-211ENST00000469858 HDAC1Q13547 482 aaPredicted RBP22.9■■□□□ 1.26
SMC4-211ENST00000469858 PHAXQ9H814 394 aaKnown RBP22.9■■□□□ 1.26
SMC4-211ENST00000469858 TTC5Q8N0Z6 440 aa22.89■■□□□ 1.26
SMC4-211ENST00000469858 DISP2A7MBM2 1401 aa22.89■■□□□ 1.26
SMC4-211ENST00000469858 NKX1-1Q15270 411 aaPredicted RBP22.89■■□□□ 1.25
SMC4-211ENST00000469858 N4BP2Q86UW6 1770 aaPredicted RBP22.88■■□□□ 1.25
SMC4-211ENST00000469858 RGS3P49796 1198 aa22.87■■□□□ 1.25
SMC4-211ENST00000469858 CCT4P50991 539 aaKnown RBP22.87■■□□□ 1.25
SMC4-211ENST00000469858 NWD2Q9ULI1 1742 aa22.87■■□□□ 1.25
SMC4-211ENST00000469858 TOGARAM1Q9Y4F4 1720 aa22.87■■□□□ 1.25
SMC4-211ENST00000469858 ANXA1P04083 346 aa22.87■■□□□ 1.25
SMC4-211ENST00000469858 CERKQ8TCT0 537 aa22.87■■□□□ 1.25
SMC4-211ENST00000469858 ZNF496Q96IT1 587 aaPredicted RBP22.87■■□□□ 1.25
SMC4-211ENST00000469858 DBF4Q9UBU7 674 aaPredicted RBP22.87■■□□□ 1.25
SMC4-211ENST00000469858 ERVV-2B6SEH9 535 aa22.86■■□□□ 1.25
SMC4-211ENST00000469858 RBM19Q9Y4C8 960 aaKnown RBP22.85■■□□□ 1.25
SMC4-211ENST00000469858 JCADQ9P266 1359 aa22.84■■□□□ 1.25
SMC4-211ENST00000469858 PXDNLA1KZ92 1463 aa22.83■■□□□ 1.25
SMC4-211ENST00000469858 FMNL2Q96PY5 1086 aa22.83■■□□□ 1.25
SMC4-211ENST00000469858 MEIS3Q99687 375 aa22.83■■□□□ 1.25
SMC4-211ENST00000469858 PDZRN3Q9UPQ7 1066 aa22.83■■□□□ 1.25
SMC4-211ENST00000469858 UBR2Q8IWV8 1755 aa22.82■■□□□ 1.24
SMC4-211ENST00000469858 PAPPAQ13219 1627 aa22.82■■□□□ 1.24
SMC4-211ENST00000469858 PROSER3Q2NL68 480 aa22.82■■□□□ 1.24
SMC4-211ENST00000469858 SLIT2O94813 1529 aa22.82■■□□□ 1.24
SMC4-211ENST00000469858 SPATA31A1Q5TZJ5 1347 aa22.82■■□□□ 1.24
SMC4-211ENST00000469858 GLI3P10071 1580 aa22.82■■□□□ 1.24
SMC4-211ENST00000469858 LAMB4A4D0S4 1761 aa22.81■■□□□ 1.24
SMC4-211ENST00000469858 SNRPA1P09661 255 aaKnown RBP22.81■■□□□ 1.24
SMC4-211ENST00000469858 SMC5Q8IY18 1101 aa22.8■■□□□ 1.24
SMC4-211ENST00000469858 SIRT2Q8IXJ6 389 aa22.8■■□□□ 1.24
SMC4-211ENST00000469858 ITGB4P16144 1822 aa22.79■■□□□ 1.24
SMC4-211ENST00000469858 EXOC5O00471 708 aa22.79■■□□□ 1.24
SMC4-211ENST00000469858 DDX21Q9NR30 783 aaKnown RBP eCLIP22.79■■□□□ 1.241e-26■■■■■ 198.7
SMC4-211ENST00000469858 HYPKQ9NX55 129 aa22.79■■□□□ 1.24
SMC4-211ENST00000469858 TNS2Q63HR2 1409 aa22.79■■□□□ 1.24
SMC4-211ENST00000469858 ATP10DQ9P241 1426 aa22.79■■□□□ 1.24
SMC4-211ENST00000469858 PI4KAP2A4QPH2 592 aa22.78■■□□□ 1.24
SMC4-211ENST00000469858 PI4KAP1Q8N8J0 262 aa22.78■■□□□ 1.24
SMC4-211ENST00000469858 THRAP3Q9Y2W1 955 aaKnown RBP22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 433 ms