RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 MCM10Q7L590 875 aa16.54■□□□□ 0.24
SPTLC1-204ENST00000469778 TRIM35Q9UPQ4 493 aa16.54■□□□□ 0.24
SPTLC1-204ENST00000469778 SCN11AQ9UI33 1791 aa16.54■□□□□ 0.24
SPTLC1-204ENST00000469778 PTF1AQ7RTS3 328 aa16.53■□□□□ 0.24
SPTLC1-204ENST00000469778 ATG3Q9NT62 314 aa16.53■□□□□ 0.24
SPTLC1-204ENST00000469778 BTBD11A6QL63 1104 aa16.52■□□□□ 0.24
SPTLC1-204ENST00000469778 TTC5Q8N0Z6 440 aa16.52■□□□□ 0.24
SPTLC1-204ENST00000469778 VSIG10Q8N0Z9 540 aa16.52■□□□□ 0.24
SPTLC1-204ENST00000469778 RRP7AQ9Y3A4 280 aaKnown RBP16.52■□□□□ 0.24
SPTLC1-204ENST00000469778 DOT1LQ8TEK3 1739 aa16.52■□□□□ 0.24
SPTLC1-204ENST00000469778 EN1Q05925 392 aaPredicted RBP16.51■□□□□ 0.23
SPTLC1-204ENST00000469778 WDR63Q8IWG1 891 aa16.51■□□□□ 0.23
SPTLC1-204ENST00000469778 ASAP1Q9ULH1 1129 aa16.51■□□□□ 0.23
SPTLC1-204ENST00000469778 PALLDQ8WX93 1383 aa16.51■□□□□ 0.23
SPTLC1-204ENST00000469778 IL16Q14005 1332 aa16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 DCTN1Q14203 1278 aa16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 TXNRD1Q16881 649 aa16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 ZNF790Q6PG37 636 aa16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 DEFB132Q7Z7B7 95 aa16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 WWC1Q8IX03 1113 aa16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 TEX13AQ9BXU3 409 aaPredicted RBP16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 RGPD3A6NKT7 1758 aaPredicted RBP16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 RGPD4Q7Z3J3 1758 aa16.5■□□□□ 0.23
SPTLC1-204ENST00000469778 ITGB4P16144 1822 aa16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 LOC102724428A0A0B4J2F2 783 aa16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 SIK1P57059 783 aa16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 GNAI1P63096 354 aa16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 CFAP44Q96MT7 982 aa16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 TNS1Q9HBL0 1735 aaKnown RBP16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 TOGARAM1Q9Y4F4 1720 aa16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 BTAF1O14981 1849 aa16.49■□□□□ 0.23
SPTLC1-204ENST00000469778 CHL1O00533 1208 aa16.48■□□□□ 0.23
SPTLC1-204ENST00000469778 NBPF14Q5TI25 921 aa16.48■□□□□ 0.23
SPTLC1-204ENST00000469778 PROM2Q8N271 834 aa16.48■□□□□ 0.23
SPTLC1-204ENST00000469778 IFT57Q9NWB7 429 aa16.48■□□□□ 0.23
SPTLC1-204ENST00000469778 CCNL1Q9UK58 526 aaPredicted RBP16.48■□□□□ 0.23
SPTLC1-204ENST00000469778 EZH2Q15910 746 aaKnown RBP16.47■□□□□ 0.23
SPTLC1-204ENST00000469778 FMNL2Q96PY5 1086 aa16.47■□□□□ 0.23
SPTLC1-204ENST00000469778 DLG5Q8TDM6 1919 aa16.47■□□□□ 0.23
SPTLC1-204ENST00000469778 CHMP4AQ9BY43 222 aa16.46■□□□□ 0.23
SPTLC1-204ENST00000469778 ZNF853P0CG23 659 aa16.45■□□□□ 0.22
SPTLC1-204ENST00000469778 ATP6V1AP38606 617 aa16.45■□□□□ 0.22
SPTLC1-204ENST00000469778 RBM42Q9BTD8 480 aaKnown RBP16.45■□□□□ 0.22
SPTLC1-204ENST00000469778 THUMPD2Q9BTF0 503 aaKnown RBP16.45■□□□□ 0.22
SPTLC1-204ENST00000469778 TSPYL4Q9UJ04 414 aa16.45■□□□□ 0.22
SPTLC1-204ENST00000469778 PTCD1O75127 700 aaKnown RBP16.44■□□□□ 0.22
SPTLC1-204ENST00000469778 SLC39A6Q13433 755 aa16.44■□□□□ 0.22
SPTLC1-204ENST00000469778 ZNF831Q5JPB2 1677 aa16.43■□□□□ 0.22
SPTLC1-204ENST00000469778 STARD3NLO95772 234 aa16.43■□□□□ 0.22
SPTLC1-204ENST00000469778 SNRPA1P09661 255 aaKnown RBP16.43■□□□□ 0.22
SPTLC1-204ENST00000469778 RC3H1Q5TC82 1133 aaKnown RBP16.43■□□□□ 0.22
SPTLC1-204ENST00000469778 ZNF496Q96IT1 587 aaPredicted RBP16.43■□□□□ 0.22
SPTLC1-204ENST00000469778 SIPA1L3O60292 1781 aaPredicted RBP16.43■□□□□ 0.22
SPTLC1-204ENST00000469778 SOS1Q07889 1333 aaPredicted RBP16.43■□□□□ 0.22
SPTLC1-204ENST00000469778 HEG1Q9ULI3 1381 aa16.42■□□□□ 0.22
SPTLC1-204ENST00000469778 MYH16Q9H6N6 1097 aa16.42■□□□□ 0.22
SPTLC1-204ENST00000469778 LRRC4BQ9NT99 713 aa16.42■□□□□ 0.22
SPTLC1-204ENST00000469778 LY75O60449 1722 aa16.42■□□□□ 0.22
SPTLC1-204ENST00000469778 VIRMAQ69YN4 1812 aaKnown RBP16.41■□□□□ 0.22
SPTLC1-204ENST00000469778 HOXB7P09629 217 aa16.41■□□□□ 0.22
SPTLC1-204ENST00000469778 EIF4A1P60842 406 aaKnown RBP16.41■□□□□ 0.22
SPTLC1-204ENST00000469778 STK32BQ9NY57 414 aa16.41■□□□□ 0.22
SPTLC1-204ENST00000469778 MIS18AQ9NYP9 233 aa16.41■□□□□ 0.22
SPTLC1-204ENST00000469778 ZNF521Q96K83 1311 aa16.41■□□□□ 0.22
SPTLC1-204ENST00000469778 GOLGA2Q08379 1002 aa16.4■□□□□ 0.22
SPTLC1-204ENST00000469778 FLAD1Q8NFF5 587 aa16.4■□□□□ 0.22
SPTLC1-204ENST00000469778 SLC4A9Q96Q91 983 aa16.4■□□□□ 0.22
SPTLC1-204ENST00000469778 LAS1LQ9Y4W2 734 aaKnown RBP16.4■□□□□ 0.22
SPTLC1-204ENST00000469778 GIGYF1O75420 1035 aaPredicted RBP16.39■□□□□ 0.21
SPTLC1-204ENST00000469778 MBIPQ9NS73 344 aa16.39■□□□□ 0.21
SPTLC1-204ENST00000469778 SALL2Q9Y467 1007 aaPredicted RBP16.39■□□□□ 0.21
SPTLC1-204ENST00000469778 CNTNAP4Q9C0A0 1308 aa16.39■□□□□ 0.21
SPTLC1-204ENST00000469778 KCPQ6ZWJ8 1503 aa16.39■□□□□ 0.21
SPTLC1-204ENST00000469778 PAPPAQ13219 1627 aa16.38■□□□□ 0.21
SPTLC1-204ENST00000469778 E9PSI1 815 aa16.38■□□□□ 0.21
SPTLC1-204ENST00000469778 KCNQ3O43525 872 aa16.38■□□□□ 0.21
SPTLC1-204ENST00000469778 ITPK1Q13572 414 aa16.38■□□□□ 0.21
SPTLC1-204ENST00000469778 SLC15A2Q16348 729 aa16.38■□□□□ 0.21
SPTLC1-204ENST00000469778 AKT1S1Q96B36 256 aa16.38■□□□□ 0.21
SPTLC1-204ENST00000469778 CYP19A1P11511 503 aaPredicted RBP16.37■□□□□ 0.21
SPTLC1-204ENST00000469778 ADRA2BP18089 450 aa16.37■□□□□ 0.21
SPTLC1-204ENST00000469778 HNRNPUQ00839 825 aaKnown RBP eCLIP16.37■□□□□ 0.21
SPTLC1-204ENST00000469778 AK7Q96M32 723 aa16.37■□□□□ 0.21
SPTLC1-204ENST00000469778 RREB1Q92766 1687 aa16.37■□□□□ 0.21
SPTLC1-204ENST00000469778 UBR2Q8IWV8 1755 aa16.36■□□□□ 0.21
SPTLC1-204ENST00000469778 DNAJC10Q8IXB1 793 aa16.36■□□□□ 0.21
SPTLC1-204ENST00000469778 CICQ96RK0 1608 aaPredicted RBP16.36■□□□□ 0.21
SPTLC1-204ENST00000469778 ERBB4Q15303 1308 aa16.36■□□□□ 0.21
SPTLC1-204ENST00000469778 RPS6KA4O75676 772 aa16.35■□□□□ 0.21
SPTLC1-204ENST00000469778 LINC00116Q8NCU8 138 aa16.35■□□□□ 0.21
SPTLC1-204ENST00000469778 CCDC87Q9NVE4 849 aa16.35■□□□□ 0.21
SPTLC1-204ENST00000469778 TFCP2L1Q9NZI6 479 aa16.35■□□□□ 0.21
SPTLC1-204ENST00000469778 KDM3BQ7LBC6 1761 aa16.34■□□□□ 0.21
SPTLC1-204ENST00000469778 SSFA2P28290 1259 aa16.34■□□□□ 0.21
SPTLC1-204ENST00000469778 CRKLP46109 303 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-204ENST00000469778 KCNQ4P56696 695 aa16.34■□□□□ 0.21
SPTLC1-204ENST00000469778 RTCBQ9Y3I0 505 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-204ENST00000469778 ZBED9Q6R2W3 1325 aa16.34■□□□□ 0.21
SPTLC1-204ENST00000469778 IL6STP40189 918 aaPredicted RBP16.33■□□□□ 0.2
SPTLC1-204ENST00000469778 SLFN5Q08AF3 891 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms