RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 RTL1A6NKG5 1358 aa12.13□□□□□ -0.47
HDAC3-205ENST00000469550 ANKRD36BQ8N2N9 1353 aa12.13□□□□□ -0.47
HDAC3-205ENST00000469550 TBC1D32Q96NH3 1257 aa12.13□□□□□ -0.47
HDAC3-205ENST00000469550 PDGFDQ9GZP0 370 aaPredicted RBP12.12□□□□□ -0.47
HDAC3-205ENST00000469550 RGPD2P0DJD1 1756 aa12.12□□□□□ -0.47
HDAC3-205ENST00000469550 LY75O60449 1722 aa12.12□□□□□ -0.47
HDAC3-205ENST00000469550 DOT1LQ8TEK3 1739 aa12.12□□□□□ -0.47
HDAC3-205ENST00000469550 FSD2A1L4K1 749 aa12.12□□□□□ -0.47
HDAC3-205ENST00000469550 CCDC146Q8IYE0 955 aa12.12□□□□□ -0.47
HDAC3-205ENST00000469550 KIF20BQ96Q89 1820 aa12.11□□□□□ -0.47
HDAC3-205ENST00000469550 SGIP1Q9BQI5 828 aa12.11□□□□□ -0.47
HDAC3-205ENST00000469550 MTFR1LQ9H019 292 aa12.11□□□□□ -0.47
HDAC3-205ENST00000469550 RRAGDQ9NQL2 400 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-205ENST00000469550 DCAF8L1A6NGE4 600 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 COG3Q96JB2 828 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 MAP3K5Q99683 1374 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 MAP3K19Q56UN5 1328 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 ZBTB7AO95365 584 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 YY1P25490 414 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 HOXC9P31274 260 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 ACSBG1Q96GR2 724 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 TUBGCP6Q96RT7 1819 aa12.1□□□□□ -0.47
HDAC3-205ENST00000469550 NCBP3Q53F19 620 aaKnown RBP12.09□□□□□ -0.47
HDAC3-205ENST00000469550 WWC1Q8IX03 1113 aa12.09□□□□□ -0.47
HDAC3-205ENST00000469550 TBC1D2Q9BYX2 928 aa12.09□□□□□ -0.47
HDAC3-205ENST00000469550 SLKQ9H2G2 1235 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-205ENST00000469550 COG6Q9Y2V7 657 aa12.09□□□□□ -0.47
HDAC3-205ENST00000469550 MEGF6O75095 1541 aa12.08□□□□□ -0.47
HDAC3-205ENST00000469550 NSD2O96028 1365 aa12.08□□□□□ -0.48
HDAC3-205ENST00000469550 KIF24Q5T7B8 1368 aa12.08□□□□□ -0.48
HDAC3-205ENST00000469550 GOLGA6L3A6NEY3 463 aa12.08□□□□□ -0.48
HDAC3-205ENST00000469550 CANXP27824 592 aaKnown RBP12.08□□□□□ -0.48
HDAC3-205ENST00000469550 SLC27A3Q5K4L6 730 aa12.08□□□□□ -0.48
HDAC3-205ENST00000469550 PANK1Q8TE04 598 aa12.08□□□□□ -0.48
HDAC3-205ENST00000469550 XRCC6P12956 609 aaKnown RBP eCLIP12.07□□□□□ -0.48
HDAC3-205ENST00000469550 MCM4P33991 863 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 CLCN1P35523 988 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 RARSP54136 660 aaKnown RBP12.07□□□□□ -0.48
HDAC3-205ENST00000469550 RWDD1Q9H446 243 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-205ENST00000469550 ISY1Q9ULR0 285 aaKnown RBP12.07□□□□□ -0.48
HDAC3-205ENST00000469550 ANKRD26Q9UPS8 1709 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 KAT6BQ8WYB5 2073 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 ZNF827Q17R98 1081 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 WDR63Q8IWG1 891 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 AKT1S1Q96B36 256 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 LRRC4BQ9NT99 713 aa12.07□□□□□ -0.48
HDAC3-205ENST00000469550 ATF5Q9Y2D1 282 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-205ENST00000469550 CHD4Q14839 1912 aa12.06□□□□□ -0.48
HDAC3-205ENST00000469550 FYB1O15117 783 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 AMPHP49418 695 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 CCDC27Q2M243 656 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 SLC16A10Q8TF71 515 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 SYT17Q9BSW7 474 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 CHMP5Q9NZZ3 219 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 PDZRN3Q9UPQ7 1066 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 PCDHB15Q9Y5E8 787 aa12.05□□□□□ -0.48
HDAC3-205ENST00000469550 LTV1Q96GA3 475 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-205ENST00000469550 FHDC1Q9C0D6 1143 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-205ENST00000469550 PKD1L3Q7Z443 1732 aa12.04□□□□□ -0.48
HDAC3-205ENST00000469550 MRE11P49959 708 aa12.04□□□□□ -0.48
HDAC3-205ENST00000469550 ZCRB1Q8TBF4 217 aaKnown RBP12.04□□□□□ -0.48
HDAC3-205ENST00000469550 DDX54Q8TDD1 881 aaKnown RBP12.04□□□□□ -0.48
HDAC3-205ENST00000469550 RUNDC1Q96C34 613 aa12.04□□□□□ -0.48
HDAC3-205ENST00000469550 NCAPD2Q15021 1401 aa12.04□□□□□ -0.48
HDAC3-205ENST00000469550 ARXQ96QS3 562 aa12.03□□□□□ -0.48
HDAC3-205ENST00000469550 CARD14Q9BXL6 1004 aa12.03□□□□□ -0.48
HDAC3-205ENST00000469550 FLT4P35916 1363 aa12.03□□□□□ -0.48
HDAC3-205ENST00000469550 GLIPR1L2Q4G1C9 344 aa12.03□□□□□ -0.48
HDAC3-205ENST00000469550 C5P01031 1676 aa12.02□□□□□ -0.48
HDAC3-205ENST00000469550 FBLN1P23142 703 aa12.02□□□□□ -0.49
HDAC3-205ENST00000469550 NBPF6Q5VWK0 638 aa12.02□□□□□ -0.49
HDAC3-205ENST00000469550 NBPF4Q96M43 638 aa12.02□□□□□ -0.49
HDAC3-205ENST00000469550 PNNQ9H307 717 aaKnown RBP12.02□□□□□ -0.49
HDAC3-205ENST00000469550 PNPLA7Q6ZV29 1317 aa12.02□□□□□ -0.49
HDAC3-205ENST00000469550 TAF1LQ8IZX4 1826 aa12.02□□□□□ -0.49
HDAC3-205ENST00000469550 TRAK2O60296 914 aa12.01□□□□□ -0.49
HDAC3-205ENST00000469550 CT47B1P0C2W7 299 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-205ENST00000469550 PRIM1P49642 420 aaKnown RBP12.01□□□□□ -0.49
HDAC3-205ENST00000469550 GGNBP2Q9H3C7 697 aa12.01□□□□□ -0.49
HDAC3-205ENST00000469550 TOGARAM1Q9Y4F4 1720 aa12.01□□□□□ -0.49
HDAC3-205ENST00000469550 DDX11L8A8MPP1 907 aa12.01□□□□□ -0.49
HDAC3-205ENST00000469550 RRS1Q15050 365 aaKnown RBP12.01□□□□□ -0.49
HDAC3-205ENST00000469550 C22orf23Q9BZE7 217 aa12.01□□□□□ -0.49
HDAC3-205ENST00000469550 ITGB4P16144 1822 aa12□□□□□ -0.49
HDAC3-205ENST00000469550 RLBP1P12271 317 aa12□□□□□ -0.49
HDAC3-205ENST00000469550 PCDH11XQ9BZA7 1347 aa12□□□□□ -0.49
HDAC3-205ENST00000469550 PCDH11YQ9BZA8 1340 aa12□□□□□ -0.49
HDAC3-205ENST00000469550 HMGB2P26583 209 aaKnown RBP11.99□□□□□ -0.49
HDAC3-205ENST00000469550 MVPQ14764 893 aaKnown RBP11.99□□□□□ -0.49
HDAC3-205ENST00000469550 RAPGEF4Q8WZA2 1011 aa11.99□□□□□ -0.49
HDAC3-205ENST00000469550 RRP9O43818 475 aaKnown RBP11.99□□□□□ -0.49
HDAC3-205ENST00000469550 HDAC1Q13547 482 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-205ENST00000469550 MYH16Q9H6N6 1097 aa11.99□□□□□ -0.49
HDAC3-205ENST00000469550 NSD3Q9BZ95 1437 aa11.99□□□□□ -0.49
HDAC3-205ENST00000469550 TATP17735 454 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-205ENST00000469550 POLD1P28340 1107 aa11.98□□□□□ -0.49
HDAC3-205ENST00000469550 SYTL4Q96C24 671 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-205ENST00000469550 CCNL1Q9UK58 526 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-205ENST00000469550 PLEKHG2Q9H7P9 1386 aa11.98□□□□□ -0.49
HDAC3-205ENST00000469550 DDIT3P35638 169 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms