RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 CENPQQ7L2Z9 268 aaPredicted RBP9.38□□□□□ -0.91
CDC42BPA-208ENST00000442054 LRP6O75581 1613 aa9.38□□□□□ -0.91
CDC42BPA-208ENST00000442054 FCHSD2O94868 740 aa9.38□□□□□ -0.91
CDC42BPA-208ENST00000442054 GOLGA2Q08379 1002 aa9.38□□□□□ -0.91
CDC42BPA-208ENST00000442054 PARP3Q9Y6F1 533 aa9.38□□□□□ -0.91
CDC42BPA-208ENST00000442054 AKAP4Q5JQC9 854 aa9.38□□□□□ -0.91
CDC42BPA-208ENST00000442054 MCM10Q7L590 875 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 DCTN1Q14203 1278 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 PPP4R3CPQ6ZMV5 832 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 KIF6Q6ZMV9 814 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 FMNL2Q96PY5 1086 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 ZNF219Q9P2Y4 722 aaPredicted RBP9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 PXDNQ92626 1479 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 LOC102724428A0A0B4J2F2 783 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 ANP32AP39687 249 aaKnown RBP9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 SIK1P57059 783 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 NRXN3Q9Y4C0 1643 aa9.37□□□□□ -0.91
CDC42BPA-208ENST00000442054 IGHDP01880 384 aa9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 TEX13AQ9BXU3 409 aaPredicted RBP9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 USP31Q70CQ4 1352 aa9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 XRN1Q8IZH2 1706 aaKnown RBP9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 APAF1O14727 1248 aa9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 MYL6BP14649 208 aa9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 PHKG2P15735 406 aa9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 MIS18AQ9NYP9 233 aa9.36□□□□□ -0.91
CDC42BPA-208ENST00000442054 WWC1Q8IX03 1113 aa9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 ASAP1Q9ULH1 1129 aa9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 ZNF652Q9Y2D9 606 aa9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 AHDC1Q5TGY3 1603 aaPredicted RBP9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 BCAR3O75815 825 aa9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 CCDC27Q2M243 656 aa9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 ZBTB47Q9UFB7 747 aaPredicted RBP9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 SLC15A2Q16348 729 aa9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 MTHFSDQ2M296 383 aaKnown RBP9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 ZNF622Q969S3 477 aaKnown RBP eCLIP9.35□□□□□ -0.916e-8■■□□□ 13
CDC42BPA-208ENST00000442054 BCL9LQ86UU0 1499 aa9.35□□□□□ -0.91
CDC42BPA-208ENST00000442054 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.34□□□□□ -0.91
CDC42BPA-208ENST00000442054 SLC27A3Q5K4L6 730 aa9.34□□□□□ -0.91
CDC42BPA-208ENST00000442054 RUNDC1Q96C34 613 aa9.34□□□□□ -0.91
CDC42BPA-208ENST00000442054 RTL1A6NKG5 1358 aa9.34□□□□□ -0.91
CDC42BPA-208ENST00000442054 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.34□□□□□ -0.914e-7■■■■□ 25
CDC42BPA-208ENST00000442054 RGS12O14924 1447 aa9.34□□□□□ -0.91
CDC42BPA-208ENST00000442054 ERVV-2B6SEH9 535 aa9.34□□□□□ -0.92
CDC42BPA-208ENST00000442054 TAF7Q15545 349 aaPredicted RBP9.34□□□□□ -0.92
CDC42BPA-208ENST00000442054 KIF1AQ12756 1690 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 E9PSI1 815 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 CHMP3Q9Y3E7 222 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 ATRNO75882 1429 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 STRCP1A6NGW2 1772 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 CYP27B1O15528 508 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 PIGBQ92521 554 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 THUMPD2Q9BTF0 503 aaKnown RBP9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 A0A087WZG4 1122 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 PDE3AQ14432 1141 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 TBC1D2BQ9UPU7 963 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 BCS1LQ9Y276 419 aa9.33□□□□□ -0.92
CDC42BPA-208ENST00000442054 NALCNQ8IZF0 1738 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 PALLDQ8WX93 1383 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 RNMTO43148 476 aaKnown RBP9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 DNAJC10Q8IXB1 793 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 PLEKHF1Q96S99 279 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 KNDC1Q76NI1 1749 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 LGR6Q9HBX8 967 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 IL13P35225 146 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 NEXNQ0ZGT2 675 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 NFE2L2Q16236 605 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 FAM161AQ3B820 660 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 RIC3Q7Z5B4 369 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 NLGN1Q8N2Q7 840 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 CCDC87Q9NVE4 849 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 DLG5Q8TDM6 1919 aa9.32□□□□□ -0.92
CDC42BPA-208ENST00000442054 MON2Q7Z3U7 1717 aa9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 PLSCR1O15162 318 aa9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 NBR1Q14596 966 aa9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 ZNF428Q96B54 188 aa9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 AKAP12Q02952 1782 aa9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 DDX58O95786 925 aaKnown RBP9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 TAF7LQ5H9L4 462 aa9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 SETDB2Q96T68 719 aa9.31□□□□□ -0.92
CDC42BPA-208ENST00000442054 TULP1O00294 542 aaPredicted RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 ONECUT3O60422 494 aaPredicted RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 SNRPA1P09661 255 aaKnown RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 HDGFL1Q5TGJ6 251 aa9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 KIF24Q5T7B8 1368 aa9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 COL5A2P05997 1499 aaPredicted RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 SLIT2O94813 1529 aa9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 RTL5Q5HYW3 569 aaPredicted RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 RLBP1P12271 317 aa9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 RARSP54136 660 aaKnown RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 GNAI1P63096 354 aa9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 NBPF5PQ86XG9 351 aaPredicted RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 SLC52A2Q9HAB3 445 aa9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 COL16A1Q07092 1604 aaPredicted RBP9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 NRKQ7Z2Y5 1582 aa9.3□□□□□ -0.92
CDC42BPA-208ENST00000442054 PIP4K2AP48426 406 aaPredicted RBP9.29□□□□□ -0.92
CDC42BPA-208ENST00000442054 SLC4A10Q6U841 1118 aa9.29□□□□□ -0.92
CDC42BPA-208ENST00000442054 MYH16Q9H6N6 1097 aa9.29□□□□□ -0.92
CDC42BPA-208ENST00000442054 SEC24BO95487 1268 aa9.29□□□□□ -0.92
CDC42BPA-208ENST00000442054 MTFR1LQ9H019 292 aa9.29□□□□□ -0.92
CDC42BPA-208ENST00000442054 C16orf71Q8IYS4 520 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms