RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 DCCP43146 1447 aa17.64■□□□□ 0.41
LIMD1-202ENST00000440097 NUCB1Q02818 461 aa17.64■□□□□ 0.41
LIMD1-202ENST00000440097 CHRNA2Q15822 529 aa17.64■□□□□ 0.41
LIMD1-202ENST00000440097 HDGFL1Q5TGJ6 251 aa17.64■□□□□ 0.41
LIMD1-202ENST00000440097 TRPM3Q9HCF6 1732 aaPredicted RBP17.64■□□□□ 0.41
LIMD1-202ENST00000440097 GCC1Q96CN9 775 aa17.63■□□□□ 0.41
LIMD1-202ENST00000440097 SIRT2Q8IXJ6 389 aa17.63■□□□□ 0.41
LIMD1-202ENST00000440097 ERBB3P21860 1342 aa17.63■□□□□ 0.41
LIMD1-202ENST00000440097 BTBD11A6QL63 1104 aa17.62■□□□□ 0.41
LIMD1-202ENST00000440097 FLIIQ13045 1269 aa17.62■□□□□ 0.41
LIMD1-202ENST00000440097 L1TD1Q5T7N2 865 aaKnown RBP17.62■□□□□ 0.41
LIMD1-202ENST00000440097 RAPGEF4Q8WZA2 1011 aa17.62■□□□□ 0.41
LIMD1-202ENST00000440097 MEIS3Q99687 375 aa17.62■□□□□ 0.41
LIMD1-202ENST00000440097 RGS12O14924 1447 aa17.62■□□□□ 0.41
LIMD1-202ENST00000440097 NCOA3Q9Y6Q9 1424 aa17.62■□□□□ 0.41
LIMD1-202ENST00000440097 BABAM1Q9NWV8 329 aa17.61■□□□□ 0.41
LIMD1-202ENST00000440097 APBB1O00213 710 aa17.6■□□□□ 0.41
LIMD1-202ENST00000440097 CEMIPQ8WUJ3 1361 aa17.6■□□□□ 0.41
LIMD1-202ENST00000440097 CCT4P50991 539 aaKnown RBP17.6■□□□□ 0.41
LIMD1-202ENST00000440097 LRRC37A3O60309 1634 aa17.59■□□□□ 0.41
LIMD1-202ENST00000440097 LMTK3Q96Q04 1460 aa17.59■□□□□ 0.41
LIMD1-202ENST00000440097 PHRF1Q9P1Y6 1649 aaKnown RBP17.59■□□□□ 0.41
LIMD1-202ENST00000440097 KCNQ3O43525 872 aa17.59■□□□□ 0.41
LIMD1-202ENST00000440097 BRINP3Q76B58 766 aa17.59■□□□□ 0.41
LIMD1-202ENST00000440097 ARXQ96QS3 562 aa17.59■□□□□ 0.41
LIMD1-202ENST00000440097 ANTXR1Q9H6X2 564 aa17.59■□□□□ 0.41
LIMD1-202ENST00000440097 TNS3Q68CZ2 1445 aa17.58■□□□□ 0.41
LIMD1-202ENST00000440097 MED1Q15648 1581 aaPredicted RBP17.58■□□□□ 0.41
LIMD1-202ENST00000440097 RNMTO43148 476 aaKnown RBP17.58■□□□□ 0.4
LIMD1-202ENST00000440097 PXDNQ92626 1479 aa17.57■□□□□ 0.4
LIMD1-202ENST00000440097 SPATA31A3Q5VYP0 1347 aa17.57■□□□□ 0.4
LIMD1-202ENST00000440097 EIF4A1P60842 406 aaKnown RBP17.57■□□□□ 0.4
LIMD1-202ENST00000440097 ALS2Q96Q42 1657 aa17.57■□□□□ 0.4
LIMD1-202ENST00000440097 PHAXQ9H814 394 aaKnown RBP17.57■□□□□ 0.4
LIMD1-202ENST00000440097 SLAIN2Q9P270 581 aa17.57■□□□□ 0.4
LIMD1-202ENST00000440097 RGPD5Q99666 1765 aa17.56■□□□□ 0.4
LIMD1-202ENST00000440097 TATP17735 454 aaPredicted RBP17.56■□□□□ 0.4
LIMD1-202ENST00000440097 MFAP1P55081 439 aaKnown RBP17.56■□□□□ 0.4
LIMD1-202ENST00000440097 CEP85Q6P2H3 762 aa17.56■□□□□ 0.4
LIMD1-202ENST00000440097 RPAP2Q8IXW5 612 aaPredicted RBP17.56■□□□□ 0.4
LIMD1-202ENST00000440097 ANKRD44Q8N8A2 993 aa17.56■□□□□ 0.4
LIMD1-202ENST00000440097 SOS1Q07889 1333 aaPredicted RBP17.56■□□□□ 0.4
LIMD1-202ENST00000440097 CHPF2Q9P2E5 772 aa17.55■□□□□ 0.4
LIMD1-202ENST00000440097 ANXA1P04083 346 aa17.54■□□□□ 0.4
LIMD1-202ENST00000440097 PRDM11Q9NQV5 511 aa17.54■□□□□ 0.4
LIMD1-202ENST00000440097 HMMRO75330 724 aa17.53■□□□□ 0.4
LIMD1-202ENST00000440097 XRCC6P12956 609 aaKnown RBP eCLIP17.53■□□□□ 0.4
LIMD1-202ENST00000440097 DCTPP1Q9H773 170 aa17.53■□□□□ 0.4
LIMD1-202ENST00000440097 GNAI2P04899 355 aa17.53■□□□□ 0.4
LIMD1-202ENST00000440097 SPG7Q9UQ90 795 aa17.53■□□□□ 0.4
LIMD1-202ENST00000440097 CHMP4AQ9BY43 222 aa17.52■□□□□ 0.4
LIMD1-202ENST00000440097 TBC1D2Q9BYX2 928 aa17.52■□□□□ 0.4
LIMD1-202ENST00000440097 ATP10DQ9P241 1426 aa17.52■□□□□ 0.39
LIMD1-202ENST00000440097 GOLGA6L3A6NEY3 463 aa17.51■□□□□ 0.39
LIMD1-202ENST00000440097 NCAPD2Q15021 1401 aa17.51■□□□□ 0.39
LIMD1-202ENST00000440097 GNAI3P08754 354 aa17.51■□□□□ 0.39
LIMD1-202ENST00000440097 TBC1D32Q96NH3 1257 aa17.51■□□□□ 0.39
LIMD1-202ENST00000440097 STRCQ7RTU9 1775 aa17.5■□□□□ 0.39
LIMD1-202ENST00000440097 FAM208AQ9UK61 1670 aaKnown RBP17.5■□□□□ 0.39
LIMD1-202ENST00000440097 NAP1L5Q96NT1 182 aaPredicted RBP17.5■□□□□ 0.39
LIMD1-202ENST00000440097 LMO7Q8WWI1 1683 aa17.5■□□□□ 0.39
LIMD1-202ENST00000440097 HOXB7P09629 217 aa17.5■□□□□ 0.39
LIMD1-202ENST00000440097 PIP4K2BP78356 416 aa17.5■□□□□ 0.39
LIMD1-202ENST00000440097 SPRYD3Q8NCJ5 442 aa17.5■□□□□ 0.39
LIMD1-202ENST00000440097 PANK2Q9BZ23 570 aa17.5■□□□□ 0.39
LIMD1-202ENST00000440097 GZF1Q9H116 711 aaPredicted RBP17.5■□□□□ 0.39
LIMD1-202ENST00000440097 SMARCA5O60264 1052 aaPredicted RBP17.49■□□□□ 0.39
LIMD1-202ENST00000440097 SLC39A6Q13433 755 aa17.49■□□□□ 0.39
LIMD1-202ENST00000440097 BMP2KLQ5H9B9 411 aa17.49■□□□□ 0.39
LIMD1-202ENST00000440097 FSD2A1L4K1 749 aa17.49■□□□□ 0.39
LIMD1-202ENST00000440097 UBTFL1P0CB47 393 aaPredicted RBP17.49■□□□□ 0.39
LIMD1-202ENST00000440097 TOM1L2Q6ZVM7 507 aa17.49■□□□□ 0.39
LIMD1-202ENST00000440097 C16orf71Q8IYS4 520 aaPredicted RBP17.49■□□□□ 0.39
LIMD1-202ENST00000440097 PI4KAP2A4QPH2 592 aa17.48■□□□□ 0.39
LIMD1-202ENST00000440097 IFNL2Q8IZJ0 200 aa17.48■□□□□ 0.39
LIMD1-202ENST00000440097 PI4KAP1Q8N8J0 262 aa17.48■□□□□ 0.39
LIMD1-202ENST00000440097 NFATC2IPQ8NCF5 419 aa17.48■□□□□ 0.39
LIMD1-202ENST00000440097 DBF4Q9UBU7 674 aaPredicted RBP17.48■□□□□ 0.39
LIMD1-202ENST00000440097 PRAMEF22A3QJZ6 481 aa17.48■□□□□ 0.39
LIMD1-202ENST00000440097 PHKG2P15735 406 aa17.48■□□□□ 0.39
LIMD1-202ENST00000440097 SRCIN1Q9C0H9 1055 aa17.48■□□□□ 0.39
LIMD1-202ENST00000440097 LRRFIP2Q9Y608 721 aaKnown RBP17.48■□□□□ 0.39
LIMD1-202ENST00000440097 XIRP1Q702N8 1843 aaKnown RBP17.47■□□□□ 0.39
LIMD1-202ENST00000440097 C22orf23Q9BZE7 217 aa17.47■□□□□ 0.39
LIMD1-202ENST00000440097 GIGYF1O75420 1035 aaPredicted RBP17.47■□□□□ 0.39
LIMD1-202ENST00000440097 MCM4P33991 863 aa17.47■□□□□ 0.39
LIMD1-202ENST00000440097 EXOC6BQ9Y2D4 811 aa17.47■□□□□ 0.39
LIMD1-202ENST00000440097 MEGF6O75095 1541 aa17.47■□□□□ 0.39
LIMD1-202ENST00000440097 STRN4Q9NRL3 753 aa17.46■□□□□ 0.39
LIMD1-202ENST00000440097 CLCN1P35523 988 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 DNAAF4Q8WXU2 420 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 SLC52A2Q9HAB3 445 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 ZNF790Q6PG37 636 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 PLEKHM2Q8IWE5 1019 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 OTUD7AQ8TE49 926 aaPredicted RBP17.45■□□□□ 0.38
LIMD1-202ENST00000440097 USP44Q9H0E7 712 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 CACNA1FO60840 1977 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 AIMP1Q12904 312 aaKnown RBP17.45■□□□□ 0.38
LIMD1-202ENST00000440097 TTC5Q8N0Z6 440 aa17.45■□□□□ 0.38
LIMD1-202ENST00000440097 CPDO75976 1380 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms