RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PDZRN3Q9UPQ7 1066 aa14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 EIF4G3O43432 1585 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 CT47B1P0C2W7 299 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 FAM177A1Q8N128 213 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 JAKMIP1Q96N16 626 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 PDRG1Q9NUG6 133 aa14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 THOC2Q8NI27 1593 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 KRT85P78386 507 aa14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 WDR78Q5VTH9 848 aa14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 SPATA32Q96LK8 384 aa14.14□□□□□ -0.15
CCDC88A-207ENST00000436346 BLOC1S2Q6QNY1 142 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 WDR33Q9C0J8 1336 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 CCDC96Q2M329 555 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 KCNH5Q8NCM2 988 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 FANCIQ9NVI1 1328 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 TMEM87AQ8NBN3 555 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 ATF7IPQ6VMQ6 1270 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 NGLY1Q96IV0 654 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 U3KPZ7 1027 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 MINDY4BA8MYZ0 360 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 MCM10Q7L590 875 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 CHD1LQ86WJ1 897 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 CFAP45Q9UL16 551 aa14.13□□□□□ -0.15
CCDC88A-207ENST00000436346 MVPQ14764 893 aaKnown RBP14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 POTEJP0CG39 1038 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 CCDC150Q8NCX0 1101 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 KIAA1328Q86T90 577 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 USHBP1Q8N6Y0 703 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 AKAP2Q9Y2D5 859 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 CEP131Q9UPN4 1083 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 TRAK2O60296 914 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 NFKBIBQ15653 356 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 TSPYL1Q9H0U9 437 aa14.12□□□□□ -0.15
CCDC88A-207ENST00000436346 FAM193AP78312 1265 aa14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 ZNF219Q9P2Y4 722 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 CBFA2T2O43439 604 aa14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 EZRP15311 586 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 IFIT5Q13325 482 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 TAX1BP1Q86VP1 789 aa14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 MKNK2Q9HBH9 465 aa14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 NKTRP30414 1462 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 NUDT16Q96DE0 195 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 WDR63Q8IWG1 891 aa14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 LRPPRCP42704 1394 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 KRT32Q14532 448 aa14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 CUL5Q93034 780 aa14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 GOLGA4Q13439 2230 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-207ENST00000436346 RPGRIP1LQ68CZ1 1315 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 NAIPQ13075 1403 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 UBA5Q9GZZ9 404 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 FANCAO15360 1455 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 SLC5A1P13866 664 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 ZNF397Q8NF99 534 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 LRRFIP2Q9Y608 721 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 ANAPC15P60006 121 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 PDE3AQ14432 1141 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 NAPBQ9H115 298 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 MRE11P49959 708 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 LEKR1Q6ZMV7 388 aa14.1□□□□□ -0.15
CCDC88A-207ENST00000436346 FEZ1Q99689 392 aa14.09□□□□□ -0.15
CCDC88A-207ENST00000436346 DDX11Q96FC9 970 aa14.09□□□□□ -0.15
CCDC88A-207ENST00000436346 DRC1Q96MC2 740 aa14.09□□□□□ -0.15
CCDC88A-207ENST00000436346 K7ELQ4 463 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-207ENST00000436346 EIF5P55010 431 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-207ENST00000436346 NUTM1Q86Y26 1132 aa14.09□□□□□ -0.15
CCDC88A-207ENST00000436346 SLF2Q8IX21 1173 aa14.08□□□□□ -0.16
CCDC88A-207ENST00000436346 DHX8Q14562 1220 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-207ENST00000436346 JAKMIP3Q5VZ66 844 aa14.08□□□□□ -0.16
CCDC88A-207ENST00000436346 IL1RAPL2Q9NP60 686 aa14.08□□□□□ -0.16
CCDC88A-207ENST00000436346 NFE2L2Q16236 605 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 DUSP27Q5VZP5 1158 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 SLC4A8Q2Y0W8 1093 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 GRIN2AQ12879 1464 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 RANBP6O60518 1105 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 GCC2Q8IWJ2 1684 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 FCHSD2O94868 740 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 MYD88Q99836 296 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 WAPLQ7Z5K2 1190 aa14.07□□□□□ -0.16
CCDC88A-207ENST00000436346 IFIT1P09914 478 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 LARP1Q6PKG0 1096 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 EHMT1Q9H9B1 1298 aa14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 KIAA0754O94854 1291 aa14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 PLCD4Q9BRC7 762 aa14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 AMOTQ4VCS5 1084 aa14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 EXOC6BQ9Y2D4 811 aa14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 ABCA10Q8WWZ4 1543 aa14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 CAMK4Q16566 473 aa14.06□□□□□ -0.16
CCDC88A-207ENST00000436346 KIAA0586Q9BVV6 1533 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 MAP3K12Q12852 859 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 CFAP74Q9C0B2 1584 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 HYPKQ9NX55 129 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 SLC12A7Q9Y666 1083 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 TRMT112Q9UI30 125 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 PLB1Q6P1J6 1458 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 EPB41L2O43491 1005 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 ST5P78524 1137 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 UPF3BQ9BZI7 483 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 CCDC61Q9Y6R9 512 aa14.05□□□□□ -0.16
CCDC88A-207ENST00000436346 CA8P35219 290 aa14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 ABCC5O15440 1437 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms