RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MROH1Q8NDA8 1641 aa10.51□□□□□ -0.73
USP40-203ENST00000427112 A0A087WWV3 80 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 HMMRO75330 724 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 CIZ1Q9ULV3 898 aaPredicted RBP10.5□□□□□ -0.73
USP40-203ENST00000427112 RTL1A6NKG5 1358 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 DIP2BQ9P265 1576 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 CHGBP05060 677 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 ZNF853P0CG23 659 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 EYA1Q99502 592 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 PRAMEF22A3QJZ6 481 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 NBPF7P0C2Y1 421 aaPredicted RBP10.5□□□□□ -0.73
USP40-203ENST00000427112 HDGFL1Q5TGJ6 251 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 MPRIPQ6WCQ1 1025 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 USP48Q86UV5 1035 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 KIDINS220Q9ULH0 1771 aa10.5□□□□□ -0.73
USP40-203ENST00000427112 UBTFL1P0CB47 393 aaPredicted RBP10.49□□□□□ -0.73
USP40-203ENST00000427112 TAF7Q15545 349 aaPredicted RBP10.49□□□□□ -0.73
USP40-203ENST00000427112 LRRC59Q96AG4 307 aaKnown RBP10.49□□□□□ -0.73
USP40-203ENST00000427112 CD163L1Q9NR16 1453 aa10.49□□□□□ -0.73
USP40-203ENST00000427112 PPP1R42Q7Z4L9 355 aa10.49□□□□□ -0.73
USP40-203ENST00000427112 EDC3Q96F86 508 aaKnown RBP10.49□□□□□ -0.73
USP40-203ENST00000427112 NSD2O96028 1365 aa10.49□□□□□ -0.73
USP40-203ENST00000427112 RASEFQ8IZ41 740 aa10.49□□□□□ -0.73
USP40-203ENST00000427112 ESYT1Q9BSJ8 1104 aa10.49□□□□□ -0.73
USP40-203ENST00000427112 CHMP4BQ9H444 224 aaKnown RBP10.49□□□□□ -0.73
USP40-203ENST00000427112 TFIP11Q9UBB9 837 aaKnown RBP10.49□□□□□ -0.73
USP40-203ENST00000427112 LARGE1O95461 756 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 RPAP2Q8IXW5 612 aaPredicted RBP10.48□□□□□ -0.73
USP40-203ENST00000427112 CCDC8Q9H0W5 538 aaPredicted RBP10.48□□□□□ -0.73
USP40-203ENST00000427112 LGR6Q9HBX8 967 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 ABTB2Q8N961 1025 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 TTC21BQ7Z4L5 1316 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 FAM135BQ49AJ0 1406 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 ADGRB3O60242 1522 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 CHL1O00533 1208 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 CASTP20810 708 aaKnown RBP10.48□□□□□ -0.73
USP40-203ENST00000427112 PRPF40BQ6NWY9 871 aaKnown RBP10.48□□□□□ -0.73
USP40-203ENST00000427112 LRRC2Q9BYS8 371 aa10.48□□□□□ -0.73
USP40-203ENST00000427112 CKAP2LQ8IYA6 745 aa10.47□□□□□ -0.73
USP40-203ENST00000427112 CHMLP26374 656 aa10.47□□□□□ -0.73
USP40-203ENST00000427112 CWF19L2Q2TBE0 894 aaKnown RBP10.47□□□□□ -0.73
USP40-203ENST00000427112 ARHGAP45Q92619 1136 aa10.47□□□□□ -0.73
USP40-203ENST00000427112 PI4KAP2A4QPH2 592 aa10.47□□□□□ -0.73
USP40-203ENST00000427112 MCCP23508 829 aa10.47□□□□□ -0.73
USP40-203ENST00000427112 PI4KAP1Q8N8J0 262 aa10.47□□□□□ -0.73
USP40-203ENST00000427112 DDX11Q96FC9 970 aa10.47□□□□□ -0.73
USP40-203ENST00000427112 ZNF330Q9Y3S2 320 aaPredicted RBP10.47□□□□□ -0.73
USP40-203ENST00000427112 ZHX1Q9UKY1 873 aaPredicted RBP10.46□□□□□ -0.73
USP40-203ENST00000427112 ABCC3O15438 1527 aa10.46□□□□□ -0.73
USP40-203ENST00000427112 COL3A1P02461 1466 aaPredicted RBP10.46□□□□□ -0.73
USP40-203ENST00000427112 CHPF2Q9P2E5 772 aa10.46□□□□□ -0.73
USP40-203ENST00000427112 MYL6BP14649 208 aa10.46□□□□□ -0.74
USP40-203ENST00000427112 LTKP29376 864 aa10.46□□□□□ -0.74
USP40-203ENST00000427112 DNM1Q05193 864 aaKnown RBP10.46□□□□□ -0.74
USP40-203ENST00000427112 SLFNL1Q499Z3 407 aa10.46□□□□□ -0.74
USP40-203ENST00000427112 ERCC4Q92889 916 aaPredicted RBP10.46□□□□□ -0.74
USP40-203ENST00000427112 JAKMIP1Q96N16 626 aaKnown RBP10.46□□□□□ -0.74
USP40-203ENST00000427112 TSPY26PQ9H489 355 aa10.46□□□□□ -0.74
USP40-203ENST00000427112 CPS1P31327 1500 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 ADCK5Q3MIX3 580 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 STK11IPQ8N1F8 1099 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 SRCIN1Q9C0H9 1055 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP40-203ENST00000427112 SOS1Q07889 1333 aaPredicted RBP10.45□□□□□ -0.74
USP40-203ENST00000427112 SPDYE4A6NLX3 237 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 DRC7Q8IY82 874 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.45□□□□□ -0.74
USP40-203ENST00000427112 INO80Q9ULG1 1556 aaPredicted RBP10.45□□□□□ -0.74
USP40-203ENST00000427112 MAP2P11137 1827 aaKnown RBP10.45□□□□□ -0.74
USP40-203ENST00000427112 PTPRMP28827 1452 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 NPHP1O15259 732 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 AK2P54819 239 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 IL17REQ8NFR9 667 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 BOLA2Q9H3K6 86 aa10.45□□□□□ -0.74
USP40-203ENST00000427112 VIRMAQ69YN4 1812 aaKnown RBP10.45□□□□□ -0.74
USP40-203ENST00000427112 RAB11FIP4Q86YS3 637 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 C9orf78Q9NZ63 289 aaPredicted RBP10.44□□□□□ -0.74
USP40-203ENST00000427112 PTH1RQ03431 593 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 LRSAM1Q6UWE0 723 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 USP44Q9H0E7 712 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 DIAPH3Q9NSV4 1193 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 SMC3Q9UQE7 1217 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 TAF6LQ9Y6J9 622 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 MYO5BQ9ULV0 1848 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 SLC39A6Q13433 755 aa10.44□□□□□ -0.74
USP40-203ENST00000427112 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.44□□□□□ -0.74
USP40-203ENST00000427112 SIGLEC1Q9BZZ2 1709 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 CBX1P83916 185 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 PROSER3Q2NL68 480 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 SYTL4Q96C24 671 aaPredicted RBP10.43□□□□□ -0.74
USP40-203ENST00000427112 CCDC85AQ96PX6 553 aaPredicted RBP10.43□□□□□ -0.74
USP40-203ENST00000427112 AMOTL2Q9Y2J4 779 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 NRXN1Q9ULB1 1477 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 PNPLA6Q8IY17 1366 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 ADCY5O95622 1261 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 ZNF592Q92610 1267 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 FAM227BQ96M60 508 aa10.43□□□□□ -0.74
USP40-203ENST00000427112 ATP10DQ9P241 1426 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 NCOA3Q9Y6Q9 1424 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 FRMPD1Q5SYB0 1578 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms