RNA–Protein interactions for RNA: ENST00000426280.3

GPC1-204, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 636 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-204ENST00000426280 RNMTO43148 476 aaKnown RBP17.18■□□□□ 0.34
GPC1-204ENST00000426280 HSP90AB1P08238 724 aaKnown RBP17.18■□□□□ 0.34
GPC1-204ENST00000426280 ATP6V1AP38606 617 aa17.18■□□□□ 0.34
GPC1-204ENST00000426280 DDX10Q13206 875 aaKnown RBP17.18■□□□□ 0.34
GPC1-204ENST00000426280 AKAP4Q5JQC9 854 aa17.18■□□□□ 0.34
GPC1-204ENST00000426280 FHDC1Q9C0D6 1143 aaPredicted RBP17.18■□□□□ 0.34
GPC1-204ENST00000426280 C4BP0C0L5 1744 aa17.17■□□□□ 0.34
GPC1-204ENST00000426280 QSER1Q2KHR3 1735 aa17.17■□□□□ 0.34
GPC1-204ENST00000426280 RBM42Q9BTD8 480 aaKnown RBP17.17■□□□□ 0.34
GPC1-204ENST00000426280 MSH5O43196 834 aa17.16■□□□□ 0.34
GPC1-204ENST00000426280 MSL1Q68DK7 614 aa17.16■□□□□ 0.34
GPC1-204ENST00000426280 RSPH6AQ9H0K4 717 aa17.16■□□□□ 0.34
GPC1-204ENST00000426280 PTCD1O75127 700 aaKnown RBP17.15■□□□□ 0.34
GPC1-204ENST00000426280 SLC39A6Q13433 755 aa17.15■□□□□ 0.34
GPC1-204ENST00000426280 IL17REQ8NFR9 667 aa17.15■□□□□ 0.34
GPC1-204ENST00000426280 SLC16A10Q8TF71 515 aa17.15■□□□□ 0.34
GPC1-204ENST00000426280 ARXQ96QS3 562 aa17.15■□□□□ 0.34
GPC1-204ENST00000426280 SYT17Q9BSW7 474 aa17.15■□□□□ 0.34
GPC1-204ENST00000426280 PHF14O94880 888 aa17.14■□□□□ 0.33
GPC1-204ENST00000426280 PRKAR2BP31323 418 aa17.14■□□□□ 0.33
GPC1-204ENST00000426280 SLC52A2Q9HAB3 445 aa17.14■□□□□ 0.33
GPC1-204ENST00000426280 SCN11AQ9UI33 1791 aa17.14■□□□□ 0.33
GPC1-204ENST00000426280 COL24A1Q17RW2 1714 aa17.13■□□□□ 0.33
GPC1-204ENST00000426280 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.13■□□□□ 0.33
GPC1-204ENST00000426280 AK7Q96M32 723 aa17.13■□□□□ 0.33
GPC1-204ENST00000426280 CFAP53Q96M91 514 aa17.12■□□□□ 0.33
GPC1-204ENST00000426280 GNPATO15228 680 aa17.11■□□□□ 0.33
GPC1-204ENST00000426280 U2AF1L5P0DN76 240 aaPredicted RBP17.11■□□□□ 0.33
GPC1-204ENST00000426280 U2AF1Q01081 240 aaKnown RBP eCLIP17.11■□□□□ 0.33
GPC1-204ENST00000426280 UBR3Q6ZT12 1888 aa17.11■□□□□ 0.33
GPC1-204ENST00000426280 ADAMTS7Q9UKP4 1686 aa17.1■□□□□ 0.33
GPC1-204ENST00000426280 DNAJC10Q8IXB1 793 aa17.09■□□□□ 0.33
GPC1-204ENST00000426280 MRC1P22897 1456 aa17.08■□□□□ 0.32
GPC1-204ENST00000426280 KCNQ3O43525 872 aa17.08■□□□□ 0.32
GPC1-204ENST00000426280 KLHL34Q8N239 644 aa17.08■□□□□ 0.32
GPC1-204ENST00000426280 NLGN2Q8NFZ4 835 aa17.08■□□□□ 0.32
GPC1-204ENST00000426280 NUDCQ9Y266 331 aa17.08■□□□□ 0.32
GPC1-204ENST00000426280 MAP3K5Q99683 1374 aa17.07■□□□□ 0.32
GPC1-204ENST00000426280 GNAT3A8MTJ3 354 aa17.07■□□□□ 0.32
GPC1-204ENST00000426280 SSFA2P28290 1259 aa17.07■□□□□ 0.32
GPC1-204ENST00000426280 INTS5Q6P9B9 1019 aaKnown RBP17.07■□□□□ 0.32
GPC1-204ENST00000426280 FLAD1Q8NFF5 587 aa17.07■□□□□ 0.32
GPC1-204ENST00000426280 ARHGEF1Q92888 912 aaKnown RBP17.07■□□□□ 0.32
GPC1-204ENST00000426280 VIRMAQ69YN4 1812 aaKnown RBP17.07■□□□□ 0.32
GPC1-204ENST00000426280 TJP1Q07157 1748 aa17.07■□□□□ 0.32
GPC1-204ENST00000426280 RPS6KA4O75676 772 aa17.06■□□□□ 0.32
GPC1-204ENST00000426280 FCHSD2O94868 740 aa17.06■□□□□ 0.32
GPC1-204ENST00000426280 POLD1P28340 1107 aa17.06■□□□□ 0.32
GPC1-204ENST00000426280 CRKLP46109 303 aaKnown RBP17.06■□□□□ 0.32
GPC1-204ENST00000426280 DCTN1Q14203 1278 aa17.06■□□□□ 0.32
GPC1-204ENST00000426280 RC3H1Q5TC82 1133 aaKnown RBP17.06■□□□□ 0.32
GPC1-204ENST00000426280 GAS2L2Q8NHY3 880 aa17.06■□□□□ 0.32
GPC1-204ENST00000426280 COL5A3P25940 1745 aaPredicted RBP17.06■□□□□ 0.32
GPC1-204ENST00000426280 MYH14Q7Z406 1995 aaKnown RBP17.06■□□□□ 0.32
GPC1-204ENST00000426280 KCPQ6ZWJ8 1503 aa17.06■□□□□ 0.32
GPC1-204ENST00000426280 CNTNAP4Q9C0A0 1308 aa17.05■□□□□ 0.32
GPC1-204ENST00000426280 ZNF831Q5JPB2 1677 aa17.05■□□□□ 0.32
GPC1-204ENST00000426280 TRAPPC3LQ5T215 181 aa17.04■□□□□ 0.32
GPC1-204ENST00000426280 MCM10Q7L590 875 aa17.04■□□□□ 0.32
GPC1-204ENST00000426280 PLEKHF1Q96S99 279 aa17.04■□□□□ 0.32
GPC1-204ENST00000426280 RTCBQ9Y3I0 505 aaKnown RBP17.04■□□□□ 0.32
GPC1-204ENST00000426280 ZNF316A6NFI3 1004 aaPredicted RBP17.03■□□□□ 0.32
GPC1-204ENST00000426280 CYP19A1P11511 503 aaPredicted RBP17.03■□□□□ 0.32
GPC1-204ENST00000426280 CEMIPQ8WUJ3 1361 aa17.02■□□□□ 0.32
GPC1-204ENST00000426280 RALBP1Q15311 655 aa17.02■□□□□ 0.32
GPC1-204ENST00000426280 ZNF496Q96IT1 587 aaPredicted RBP17.02■□□□□ 0.32
GPC1-204ENST00000426280 SRP68Q9UHB9 627 aaKnown RBP17.02■□□□□ 0.32
GPC1-204ENST00000426280 GYS1P13807 737 aa17■□□□□ 0.31
GPC1-204ENST00000426280 TEFQ10587 303 aa17■□□□□ 0.31
GPC1-204ENST00000426280 ZNF790Q6PG37 636 aa17■□□□□ 0.31
GPC1-204ENST00000426280 SIPA1L3O60292 1781 aaPredicted RBP17■□□□□ 0.31
GPC1-204ENST00000426280 PRAMEF22A3QJZ6 481 aa16.99■□□□□ 0.31
GPC1-204ENST00000426280 HMGB2P26583 209 aaKnown RBP16.99■□□□□ 0.31
GPC1-204ENST00000426280 CCDC87Q9NVE4 849 aa16.99■□□□□ 0.31
GPC1-204ENST00000426280 MIS18AQ9NYP9 233 aa16.99■□□□□ 0.31
GPC1-204ENST00000426280 ZBTB1Q9Y2K1 713 aa16.99■□□□□ 0.31
GPC1-204ENST00000426280 MMP10P09238 476 aa16.98■□□□□ 0.31
GPC1-204ENST00000426280 THUMPD2Q9BTF0 503 aaKnown RBP16.98■□□□□ 0.31
GPC1-204ENST00000426280 CICQ96RK0 1608 aaPredicted RBP16.98■□□□□ 0.31
GPC1-204ENST00000426280 UBR2Q8IWV8 1755 aa16.97■□□□□ 0.31
GPC1-204ENST00000426280 BTBD11A6QL63 1104 aa16.97■□□□□ 0.31
GPC1-204ENST00000426280 YBX3P16989 372 aaKnown RBP eCLIP16.97■□□□□ 0.31
GPC1-204ENST00000426280 RFC4P35249 363 aa16.97■□□□□ 0.31
GPC1-204ENST00000426280 FKBP8Q14318 412 aa16.97■□□□□ 0.31
GPC1-204ENST00000426280 SOS1Q07889 1333 aaPredicted RBP16.96■□□□□ 0.31
GPC1-204ENST00000426280 MYBBP1AQ9BQG0 1328 aaKnown RBP16.96■□□□□ 0.31
GPC1-204ENST00000426280 ADRA2BP18089 450 aa16.96■□□□□ 0.31
GPC1-204ENST00000426280 CANXP27824 592 aaKnown RBP16.96■□□□□ 0.31
GPC1-204ENST00000426280 VSIG10Q8N0Z9 540 aa16.96■□□□□ 0.31
GPC1-204ENST00000426280 PRKRIP1Q9H875 184 aaPredicted RBP16.96■□□□□ 0.31
GPC1-204ENST00000426280 WWC3Q9ULE0 1092 aa16.96■□□□□ 0.31
GPC1-204ENST00000426280 HEG1Q9ULI3 1381 aa16.96■□□□□ 0.31
GPC1-204ENST00000426280 C4AP0C0L4 1744 aa16.96■□□□□ 0.3
GPC1-204ENST00000426280 A1BGP04217 495 aa16.95■□□□□ 0.3
GPC1-204ENST00000426280 TTC5Q8N0Z6 440 aa16.95■□□□□ 0.3
GPC1-204ENST00000426280 BCL2L12Q9HB09 334 aa16.95■□□□□ 0.3
GPC1-204ENST00000426280 CD2APQ9Y5K6 639 aa16.95■□□□□ 0.3
GPC1-204ENST00000426280 USP16Q9Y5T5 823 aa16.95■□□□□ 0.3
GPC1-204ENST00000426280 USP42Q9H9J4 1324 aaKnown RBP16.95■□□□□ 0.3
GPC1-204ENST00000426280 PIP4K2AP48426 406 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms