RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 DDX10Q13206 875 aaKnown RBP15□□□□□ -0.01
RFFL-204ENST00000414419 MTHFSDQ2M296 383 aaKnown RBP15□□□□□ -0.01
RFFL-204ENST00000414419 NFATC2IPQ8NCF5 419 aa15□□□□□ -0.01
RFFL-204ENST00000414419 FLAD1Q8NFF5 587 aa15□□□□□ -0.01
RFFL-204ENST00000414419 RBM42Q9BTD8 480 aaKnown RBP15□□□□□ -0.01
RFFL-204ENST00000414419 U2AF1L5P0DN76 240 aaPredicted RBP14.99□□□□□ -0.01
RFFL-204ENST00000414419 POLD1P28340 1107 aa14.99□□□□□ -0.01
RFFL-204ENST00000414419 U2AF1Q01081 240 aaKnown RBP eCLIP14.99□□□□□ -0.01
RFFL-204ENST00000414419 GAS2L2Q8NHY3 880 aa14.99□□□□□ -0.01
RFFL-204ENST00000414419 C4BP0C0L5 1744 aa14.99□□□□□ -0.01
RFFL-204ENST00000414419 DCAF8L1A6NGE4 600 aa14.98□□□□□ -0.01
RFFL-204ENST00000414419 PTGER2P43116 358 aa14.98□□□□□ -0.01
RFFL-204ENST00000414419 RNMTO43148 476 aaKnown RBP14.97□□□□□ -0.01
RFFL-204ENST00000414419 COL23A1Q86Y22 540 aaPredicted RBP14.97□□□□□ -0.01
RFFL-204ENST00000414419 LGR6Q9HBX8 967 aa14.97□□□□□ -0.01
RFFL-204ENST00000414419 PRKAR2BP31323 418 aa14.96□□□□□ -0.01
RFFL-204ENST00000414419 RALBP1Q15311 655 aa14.96□□□□□ -0.01
RFFL-204ENST00000414419 UBR3Q6ZT12 1888 aa14.96□□□□□ -0.01
RFFL-204ENST00000414419 LINC00116Q8NCU8 138 aa14.96□□□□□ -0.01
RFFL-204ENST00000414419 ARXQ96QS3 562 aa14.96□□□□□ -0.01
RFFL-204ENST00000414419 SLC52A2Q9HAB3 445 aa14.96□□□□□ -0.01
RFFL-204ENST00000414419 GNAT3A8MTJ3 354 aa14.95□□□□□ -0.02
RFFL-204ENST00000414419 PTCD1O75127 700 aaKnown RBP14.95□□□□□ -0.02
RFFL-204ENST00000414419 PHF14O94880 888 aa14.95□□□□□ -0.02
RFFL-204ENST00000414419 NEFMP07197 916 aa14.95□□□□□ -0.02
RFFL-204ENST00000414419 ITPK1Q13572 414 aa14.95□□□□□ -0.02
RFFL-204ENST00000414419 RSPH6AQ9H0K4 717 aa14.95□□□□□ -0.02
RFFL-204ENST00000414419 ZNF831Q5JPB2 1677 aa14.95□□□□□ -0.02
RFFL-204ENST00000414419 GNPATO15228 680 aa14.94□□□□□ -0.02
RFFL-204ENST00000414419 FCHSD2O94868 740 aa14.94□□□□□ -0.02
RFFL-204ENST00000414419 SGIP1Q9BQI5 828 aa14.94□□□□□ -0.02
RFFL-204ENST00000414419 MAP3K5Q99683 1374 aa14.94□□□□□ -0.02
RFFL-204ENST00000414419 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.93□□□□□ -0.02
RFFL-204ENST00000414419 SSFA2P28290 1259 aa14.93□□□□□ -0.02
RFFL-204ENST00000414419 TEFQ10587 303 aa14.93□□□□□ -0.02
RFFL-204ENST00000414419 KLHL34Q8N239 644 aa14.93□□□□□ -0.02
RFFL-204ENST00000414419 FHDC1Q9C0D6 1143 aaPredicted RBP14.93□□□□□ -0.02
RFFL-204ENST00000414419 PHACTR3Q96KR7 559 aa14.92□□□□□ -0.02
RFFL-204ENST00000414419 SLC4A9Q96Q91 983 aa14.92□□□□□ -0.02
RFFL-204ENST00000414419 RTCBQ9Y3I0 505 aaKnown RBP14.92□□□□□ -0.02
RFFL-204ENST00000414419 COL5A3P25940 1745 aaPredicted RBP14.92□□□□□ -0.02
RFFL-204ENST00000414419 COL24A1Q17RW2 1714 aa14.92□□□□□ -0.02
RFFL-204ENST00000414419 ADAMTS7Q9UKP4 1686 aa14.91□□□□□ -0.02
RFFL-204ENST00000414419 RC3H1Q5TC82 1133 aaKnown RBP14.91□□□□□ -0.02
RFFL-204ENST00000414419 MSL1Q68DK7 614 aa14.91□□□□□ -0.02
RFFL-204ENST00000414419 TTC5Q8N0Z6 440 aa14.91□□□□□ -0.02
RFFL-204ENST00000414419 RTF1Q92541 710 aaKnown RBP14.91□□□□□ -0.02
RFFL-204ENST00000414419 SYT17Q9BSW7 474 aa14.91□□□□□ -0.02
RFFL-204ENST00000414419 PNNQ9H307 717 aaKnown RBP14.91□□□□□ -0.02
RFFL-204ENST00000414419 MRC1P22897 1456 aa14.9□□□□□ -0.02
RFFL-204ENST00000414419 SLC39A6Q13433 755 aa14.9□□□□□ -0.02
RFFL-204ENST00000414419 TRAPPC3LQ5T215 181 aa14.9□□□□□ -0.02
RFFL-204ENST00000414419 MYH14Q7Z406 1995 aaKnown RBP14.89□□□□□ -0.03
RFFL-204ENST00000414419 SMIM5Q71RC9 77 aa14.89□□□□□ -0.03
RFFL-204ENST00000414419 IL17REQ8NFR9 667 aa14.89□□□□□ -0.03
RFFL-204ENST00000414419 CNTNAP4Q9C0A0 1308 aa14.89□□□□□ -0.03
RFFL-204ENST00000414419 AMIGO3Q86WK7 504 aa14.88□□□□□ -0.03
RFFL-204ENST00000414419 MYBBP1AQ9BQG0 1328 aaKnown RBP14.88□□□□□ -0.03
RFFL-204ENST00000414419 RPS6KA4O75676 772 aa14.87□□□□□ -0.03
RFFL-204ENST00000414419 ADRA2BP18089 450 aa14.87□□□□□ -0.03
RFFL-204ENST00000414419 RFC4P35249 363 aa14.87□□□□□ -0.03
RFFL-204ENST00000414419 CRKLP46109 303 aaKnown RBP14.87□□□□□ -0.03
RFFL-204ENST00000414419 MAPK8IP3Q9UPT6 1336 aa14.87□□□□□ -0.03
RFFL-204ENST00000414419 TJP1Q07157 1748 aa14.86□□□□□ -0.03
RFFL-204ENST00000414419 DLG5Q8TDM6 1919 aa14.86□□□□□ -0.03
RFFL-204ENST00000414419 SIPA1L3O60292 1781 aaPredicted RBP14.86□□□□□ -0.03
RFFL-204ENST00000414419 DNAJC10Q8IXB1 793 aa14.86□□□□□ -0.03
RFFL-204ENST00000414419 CICQ96RK0 1608 aaPredicted RBP14.85□□□□□ -0.03
RFFL-204ENST00000414419 BTBD11A6QL63 1104 aa14.85□□□□□ -0.03
RFFL-204ENST00000414419 HTATSF1O43719 755 aaKnown RBP14.85□□□□□ -0.03
RFFL-204ENST00000414419 ZNF790Q6PG37 636 aa14.85□□□□□ -0.03
RFFL-204ENST00000414419 VSIG10Q8N0Z9 540 aa14.85□□□□□ -0.03
RFFL-204ENST00000414419 ARHGEF1Q92888 912 aaKnown RBP14.85□□□□□ -0.03
RFFL-204ENST00000414419 UBR2Q8IWV8 1755 aa14.85□□□□□ -0.03
RFFL-204ENST00000414419 CEMIPQ8WUJ3 1361 aa14.85□□□□□ -0.03
RFFL-204ENST00000414419 MCM10Q7L590 875 aa14.84□□□□□ -0.03
RFFL-204ENST00000414419 KCPQ6ZWJ8 1503 aa14.83□□□□□ -0.04
RFFL-204ENST00000414419 STARD3NLO95772 234 aa14.83□□□□□ -0.04
RFFL-204ENST00000414419 NLGN1Q8N2Q7 840 aa14.83□□□□□ -0.04
RFFL-204ENST00000414419 FMNL2Q96PY5 1086 aa14.83□□□□□ -0.04
RFFL-204ENST00000414419 TEX13AQ9BXU3 409 aaPredicted RBP14.83□□□□□ -0.04
RFFL-204ENST00000414419 CCDC87Q9NVE4 849 aa14.83□□□□□ -0.04
RFFL-204ENST00000414419 CYP19A1P11511 503 aaPredicted RBP14.82□□□□□ -0.04
RFFL-204ENST00000414419 WDR43Q15061 677 aaKnown RBP eCLIP14.82□□□□□ -0.04
RFFL-204ENST00000414419 INTS5Q6P9B9 1019 aaKnown RBP14.82□□□□□ -0.04
RFFL-204ENST00000414419 ZNF496Q96IT1 587 aaPredicted RBP14.82□□□□□ -0.04
RFFL-204ENST00000414419 PLEKHF1Q96S99 279 aa14.82□□□□□ -0.04
RFFL-204ENST00000414419 PRKRIP1Q9H875 184 aaPredicted RBP14.82□□□□□ -0.04
RFFL-204ENST00000414419 C4AP0C0L4 1744 aa14.81□□□□□ -0.04
RFFL-204ENST00000414419 ZNF316A6NFI3 1004 aaPredicted RBP14.81□□□□□ -0.04
RFFL-204ENST00000414419 ZPR1O75312 459 aa14.81□□□□□ -0.04
RFFL-204ENST00000414419 DCTN1Q14203 1278 aa14.81□□□□□ -0.04
RFFL-204ENST00000414419 NFE2L2Q16236 605 aa14.81□□□□□ -0.04
RFFL-204ENST00000414419 GPR162Q16538 588 aa14.81□□□□□ -0.04
RFFL-204ENST00000414419 PELP1Q8IZL8 1130 aaKnown RBP14.81□□□□□ -0.04
RFFL-204ENST00000414419 CD2APQ9Y5K6 639 aa14.81□□□□□ -0.04
RFFL-204ENST00000414419 HEG1Q9ULI3 1381 aa14.81□□□□□ -0.04
RFFL-204ENST00000414419 MMP10P09238 476 aa14.8□□□□□ -0.04
RFFL-204ENST00000414419 TAF7Q15545 349 aaPredicted RBP14.8□□□□□ -0.04
RFFL-204ENST00000414419 NPM2Q86SE8 214 aaKnown RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms