RNA–Protein interactions for RNA: ENST00000409455.5

LIMS2-205, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-205ENST00000409455 LRRC7Q96NW7 1537 aa18.94■□□□□ 0.62
LIMS2-205ENST00000409455 DYNC1I1O14576 645 aa18.93■□□□□ 0.62
LIMS2-205ENST00000409455 AMPHP49418 695 aa18.92■□□□□ 0.62
LIMS2-205ENST00000409455 CCDC39Q9UFE4 941 aa18.92■□□□□ 0.62
LIMS2-205ENST00000409455 PRPF40AO75400 957 aaKnown RBP18.91■□□□□ 0.62
LIMS2-205ENST00000409455 SULT6B1Q6IMI4 303 aa18.91■□□□□ 0.62
LIMS2-205ENST00000409455 AEBP1Q8IUX7 1158 aa18.91■□□□□ 0.62
LIMS2-205ENST00000409455 ARHGAP45Q92619 1136 aa18.91■□□□□ 0.62
LIMS2-205ENST00000409455 PRDM4Q9UKN5 801 aa18.91■□□□□ 0.62
LIMS2-205ENST00000409455 ATF3P18847 181 aa18.91■□□□□ 0.62
LIMS2-205ENST00000409455 PEAK1Q9H792 1746 aa18.9■□□□□ 0.62
LIMS2-205ENST00000409455 PKP1Q13835 747 aa18.9■□□□□ 0.62
LIMS2-205ENST00000409455 SBNO1A3KN83 1393 aa18.9■□□□□ 0.62
LIMS2-205ENST00000409455 GSPT1P15170 499 aaKnown RBP18.9■□□□□ 0.62
LIMS2-205ENST00000409455 NFE2L2Q16236 605 aa18.9■□□□□ 0.62
LIMS2-205ENST00000409455 ST18O60284 1047 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 SASS6Q6UVJ0 657 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 LRSAM1Q6UWE0 723 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 GPT2Q8TD30 523 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 STRCP1A6NGW2 1772 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 FLT4P35916 1363 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 C1orf167Q5SNV9 1468 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 SIRT2Q8IXJ6 389 aa18.89■□□□□ 0.61
LIMS2-205ENST00000409455 RBM27Q9P2N5 1060 aaKnown RBP18.88■□□□□ 0.61
LIMS2-205ENST00000409455 INTS3Q68E01 1043 aaKnown RBP18.88■□□□□ 0.61
LIMS2-205ENST00000409455 SMAP1Q8IYB5 467 aaPredicted RBP18.87■□□□□ 0.61
LIMS2-205ENST00000409455 USP26Q9BXU7 913 aa18.87■□□□□ 0.61
LIMS2-205ENST00000409455 MRPL50Q8N5N7 158 aaKnown RBP18.87■□□□□ 0.61
LIMS2-205ENST00000409455 SYCE3A1L190 88 aa18.86■□□□□ 0.61
LIMS2-205ENST00000409455 HOXC9P31274 260 aa18.86■□□□□ 0.61
LIMS2-205ENST00000409455 KRT28Q7Z3Y7 464 aa18.86■□□□□ 0.61
LIMS2-205ENST00000409455 PLEKHM2Q8IWE5 1019 aa18.86■□□□□ 0.61
LIMS2-205ENST00000409455 TTC22Q5TAA0 569 aa18.85■□□□□ 0.61
LIMS2-205ENST00000409455 CASC1Q6TDU7 716 aa18.85■□□□□ 0.61
LIMS2-205ENST00000409455 ABCC4O15439 1325 aa18.85■□□□□ 0.61
LIMS2-205ENST00000409455 LMOD2Q6P5Q4 547 aa18.85■□□□□ 0.61
LIMS2-205ENST00000409455 THUMPD2Q9BTF0 503 aaKnown RBP18.85■□□□□ 0.61
LIMS2-205ENST00000409455 PLEKHG5O94827 1062 aa18.84■□□□□ 0.61
LIMS2-205ENST00000409455 TMEM63CQ9P1W3 806 aa18.84■□□□□ 0.61
LIMS2-205ENST00000409455 MARF1Q9Y4F3 1742 aaKnown RBP18.84■□□□□ 0.61
LIMS2-205ENST00000409455 ZGPATQ8N5A5 531 aaKnown RBP18.84■□□□□ 0.61
LIMS2-205ENST00000409455 STRCQ7RTU9 1775 aa18.84■□□□□ 0.61
LIMS2-205ENST00000409455 MST1RQ04912 1400 aa18.84■□□□□ 0.61
LIMS2-205ENST00000409455 VAMP4O75379 141 aa18.83■□□□□ 0.61
LIMS2-205ENST00000409455 MBD3O95983 291 aa18.83■□□□□ 0.61
LIMS2-205ENST00000409455 CADPS2Q86UW7 1296 aa18.83■□□□□ 0.61
LIMS2-205ENST00000409455 EYA1Q99502 592 aa18.83■□□□□ 0.61
LIMS2-205ENST00000409455 PTMAP06454 111 aaKnown RBP18.82■□□□□ 0.6
LIMS2-205ENST00000409455 DDX17Q92841 729 aaKnown RBP18.82■□□□□ 0.6
LIMS2-205ENST00000409455 ARID3AQ99856 593 aa18.82■□□□□ 0.6
LIMS2-205ENST00000409455 ZNF335Q9H4Z2 1342 aaPredicted RBP18.82■□□□□ 0.6
LIMS2-205ENST00000409455 FAM83GA6ND36 823 aa18.81■□□□□ 0.6
LIMS2-205ENST00000409455 KIAA2012Q0VF49 1180 aa18.81■□□□□ 0.6
LIMS2-205ENST00000409455 KCNH5Q8NCM2 988 aa18.81■□□□□ 0.6
LIMS2-205ENST00000409455 ZDHHC9Q9Y397 364 aa18.81■□□□□ 0.6
LIMS2-205ENST00000409455 KIF24Q5T7B8 1368 aa18.81■□□□□ 0.6
LIMS2-205ENST00000409455 DCCP43146 1447 aa18.81■□□□□ 0.6
LIMS2-205ENST00000409455 LTV1Q96GA3 475 aaPredicted RBP18.81■□□□□ 0.6
LIMS2-205ENST00000409455 USP54Q70EL1 1684 aa18.8■□□□□ 0.6
LIMS2-205ENST00000409455 ARHGEF10O15013 1369 aa18.8■□□□□ 0.6
LIMS2-205ENST00000409455 REC8O95072 547 aa18.8■□□□□ 0.6
LIMS2-205ENST00000409455 GCP02774 474 aa18.8■□□□□ 0.6
LIMS2-205ENST00000409455 MSH6P52701 1360 aa18.8■□□□□ 0.6
LIMS2-205ENST00000409455 RNF214Q8ND24 703 aa18.8■□□□□ 0.6
LIMS2-205ENST00000409455 API5Q9BZZ5 524 aaKnown RBP18.8■□□□□ 0.6
LIMS2-205ENST00000409455 IGSF1Q8N6C5 1336 aa18.79■□□□□ 0.6
LIMS2-205ENST00000409455 DCTN1Q14203 1278 aa18.79■□□□□ 0.6
LIMS2-205ENST00000409455 DCTPP1Q9H773 170 aa18.79■□□□□ 0.6
LIMS2-205ENST00000409455 ZBTB7CA1YPR0 619 aa18.79■□□□□ 0.6
LIMS2-205ENST00000409455 IP6K1Q92551 441 aa18.79■□□□□ 0.6
LIMS2-205ENST00000409455 RGPD1P0DJD0 1748 aa18.78■□□□□ 0.6
LIMS2-205ENST00000409455 GNAI1P63096 354 aa18.78■□□□□ 0.6
LIMS2-205ENST00000409455 LMOD3Q0VAK6 560 aa18.78■□□□□ 0.6
LIMS2-205ENST00000409455 TSPYL6Q8N831 410 aa18.78■□□□□ 0.6
LIMS2-205ENST00000409455 CCDC94Q9BW85 323 aaPredicted RBP18.78■□□□□ 0.6
LIMS2-205ENST00000409455 DNTTIP2Q5QJE6 756 aaKnown RBP18.77■□□□□ 0.6
LIMS2-205ENST00000409455 SYAP1Q96A49 352 aaPredicted RBP18.77■□□□□ 0.6
LIMS2-205ENST00000409455 TSPY26PQ9H489 355 aa18.77■□□□□ 0.6
LIMS2-205ENST00000409455 NSFL1CQ9UNZ2 370 aaKnown RBP18.77■□□□□ 0.6
LIMS2-205ENST00000409455 KDRP35968 1356 aa18.77■□□□□ 0.6
LIMS2-205ENST00000409455 ELL2O00472 640 aaPredicted RBP18.77■□□□□ 0.6
LIMS2-205ENST00000409455 IFT57Q9NWB7 429 aa18.77■□□□□ 0.6
LIMS2-205ENST00000409455 SDSP20132 328 aa18.76■□□□□ 0.59
LIMS2-205ENST00000409455 NFAT5O94916 1531 aa18.76■□□□□ 0.59
LIMS2-205ENST00000409455 TWISTNBQ3B726 338 aaPredicted RBP18.76■□□□□ 0.59
LIMS2-205ENST00000409455 MYRIPQ8NFW9 859 aa18.76■□□□□ 0.59
LIMS2-205ENST00000409455 C16orf71Q8IYS4 520 aaPredicted RBP18.75■□□□□ 0.59
LIMS2-205ENST00000409455 MTHFSDQ2M296 383 aaKnown RBP18.75■□□□□ 0.59
LIMS2-205ENST00000409455 ARHGEF25Q86VW2 580 aa18.75■□□□□ 0.59
LIMS2-205ENST00000409455 CHAMP1Q96JM3 812 aa18.75■□□□□ 0.59
LIMS2-205ENST00000409455 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.75■□□□□ 0.59
LIMS2-205ENST00000409455 RTL1A6NKG5 1358 aa18.75■□□□□ 0.59
LIMS2-205ENST00000409455 KIF1AQ12756 1690 aa18.75■□□□□ 0.59
LIMS2-205ENST00000409455 PHF14O94880 888 aa18.74■□□□□ 0.59
LIMS2-205ENST00000409455 ZNF853P0CG23 659 aa18.74■□□□□ 0.59
LIMS2-205ENST00000409455 FOXD4L5Q5VV16 416 aaPredicted RBP18.74■□□□□ 0.59
LIMS2-205ENST00000409455 FOXD4L4Q8WXT5 416 aaPredicted RBP18.74■□□□□ 0.59
LIMS2-205ENST00000409455 PRIMPOLQ96LW4 560 aa18.74■□□□□ 0.59
LIMS2-205ENST00000409455 MBIPQ9NS73 344 aa18.74■□□□□ 0.59
LIMS2-205ENST00000409455 MCM10Q7L590 875 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms