RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 TNPO1Q92973 898 aaKnown RBP12.88□□□□□ -0.35
CCDC40-204ENST00000397545 NUTM2BA6NNL0 878 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-204ENST00000397545 NUTM2EB1AL46 878 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-204ENST00000397545 FCHSD2O94868 740 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 CWC27Q6UX04 472 aaKnown RBP12.87□□□□□ -0.35
CCDC40-204ENST00000397545 ANKLE2Q86XL3 938 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 NUTM2AQ8IVF1 878 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-204ENST00000397545 STK11IPQ8N1F8 1099 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 GAS2L2Q8NHY3 880 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 NINLQ9Y2I6 1382 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 MYO3AQ8NEV4 1616 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 SRGAP3O43295 1099 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 ZMYM3Q14202 1370 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 RICTORQ6R327 1708 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 MNS1Q8NEH6 495 aa12.87□□□□□ -0.35
CCDC40-204ENST00000397545 NFE2L2Q16236 605 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 CHMP4CQ96CF2 233 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 PHACTR3Q96KR7 559 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 TPM1P09493 284 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 PSMA5P28066 241 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 LRRFIP1Q32MZ4 808 aaKnown RBP12.86□□□□□ -0.35
CCDC40-204ENST00000397545 NUTM1Q86Y26 1132 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 LARP6Q9BRS8 491 aaKnown RBP12.86□□□□□ -0.35
CCDC40-204ENST00000397545 METP08581 1390 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 F6X3S4 739 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 EVA1CP58658 441 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 PDILTQ8N807 584 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 PTPRMP28827 1452 aa12.86□□□□□ -0.35
CCDC40-204ENST00000397545 UQCRHLA0A096LP55 91 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 KINO60870 393 aaKnown RBP12.85□□□□□ -0.35
CCDC40-204ENST00000397545 UQCRHP07919 91 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 LARP1BQ659C4 914 aaKnown RBP12.85□□□□□ -0.35
CCDC40-204ENST00000397545 PCMTD1Q96MG8 357 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-204ENST00000397545 PLEKHF1Q96S99 279 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 WDR33Q9C0J8 1336 aaKnown RBP12.85□□□□□ -0.35
CCDC40-204ENST00000397545 ZFYVE9O95405 1425 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 MYO5BQ9ULV0 1848 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 VPS53Q5VIR6 699 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 GDPD2Q9HCC8 539 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 CYP46A1Q9Y6A2 500 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 CCDC61Q9Y6R9 512 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 PRKCSHP14314 528 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-204ENST00000397545 PDCP20941 246 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 CCT4P50991 539 aaKnown RBP12.85□□□□□ -0.35
CCDC40-204ENST00000397545 ZSCAN30Q86W11 494 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 SRCIN1Q9C0H9 1055 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 TTLL5Q6EMB2 1281 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 MAP7D2Q96T17 732 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 PANK2Q9BZ23 570 aa12.85□□□□□ -0.35
CCDC40-204ENST00000397545 ARHGEF28Q8N1W1 1705 aaKnown RBP12.85□□□□□ -0.35
CCDC40-204ENST00000397545 PPP6R1Q9UPN7 881 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 PPIP5K1Q6PFW1 1433 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 ALKQ9UM73 1620 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 SMC2O95347 1197 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 RPAP2Q8IXW5 612 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-204ENST00000397545 PREX1Q8TCU6 1659 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 RIMBP3CA6NJZ7 1639 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 RIMBP3BA6NNM3 1639 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 RIMBP3Q9UFD9 1639 aa12.84□□□□□ -0.35
CCDC40-204ENST00000397545 JAKMIP1Q96N16 626 aaKnown RBP12.84□□□□□ -0.35
CCDC40-204ENST00000397545 ZC3H13Q5T200 1668 aaKnown RBP12.84□□□□□ -0.35
CCDC40-204ENST00000397545 TBC1D32Q96NH3 1257 aa12.83□□□□□ -0.36
CCDC40-204ENST00000397545 PHF23Q9BUL5 403 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-204ENST00000397545 FAM83GA6ND36 823 aa12.83□□□□□ -0.36
CCDC40-204ENST00000397545 A2ML1A8K2U0 1454 aa12.83□□□□□ -0.36
CCDC40-204ENST00000397545 FAM177BA6PVY3 158 aa12.83□□□□□ -0.36
CCDC40-204ENST00000397545 MEX3CQ5U5Q3 659 aaKnown RBP12.83□□□□□ -0.36
CCDC40-204ENST00000397545 HMGN5P82970 282 aaKnown RBP12.82□□□□□ -0.36
CCDC40-204ENST00000397545 FILIP1Q7Z7B0 1213 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 PKNOX2Q96KN3 472 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 RAD21O60216 631 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 SEC24BO95487 1268 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 CCDC192P0DO97 292 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 TSHZ3Q63HK5 1081 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 TNMDQ9H2S6 317 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 MTMR7Q9Y216 660 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 TMEM131LA2VDJ0 1609 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 IPO7O95373 1038 aaKnown RBP12.82□□□□□ -0.36
CCDC40-204ENST00000397545 KRT85P78386 507 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 TNRQ92752 1358 aa12.82□□□□□ -0.36
CCDC40-204ENST00000397545 SAFBQ15424 915 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC40-204ENST00000397545 TBC1D9Q6ZT07 1266 aa12.81□□□□□ -0.36
CCDC40-204ENST00000397545 LETM1O95202 739 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-204ENST00000397545 ME1P48163 572 aa12.81□□□□□ -0.36
CCDC40-204ENST00000397545 GPS2Q13227 327 aa12.81□□□□□ -0.36
CCDC40-204ENST00000397545 AACSQ86V21 672 aa12.81□□□□□ -0.36
CCDC40-204ENST00000397545 DDX11Q96FC9 970 aa12.81□□□□□ -0.36
CCDC40-204ENST00000397545 MYL6BP14649 208 aa12.8□□□□□ -0.36
CCDC40-204ENST00000397545 STK38Q15208 465 aa12.8□□□□□ -0.36
CCDC40-204ENST00000397545 CAMK4Q16566 473 aa12.8□□□□□ -0.36
CCDC40-204ENST00000397545 MTERF4Q7Z6M4 381 aaKnown RBP12.8□□□□□ -0.36
CCDC40-204ENST00000397545 CLTCQ00610 1675 aaKnown RBP12.8□□□□□ -0.36
CCDC40-204ENST00000397545 ZNF530Q6P9A1 599 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-204ENST00000397545 BLOC1S2Q6QNY1 142 aa12.8□□□□□ -0.36
CCDC40-204ENST00000397545 RBM42Q9BTD8 480 aaKnown RBP12.8□□□□□ -0.36
CCDC40-204ENST00000397545 NAT10Q9H0A0 1025 aaKnown RBP12.8□□□□□ -0.36
CCDC40-204ENST00000397545 FAM177A1Q8N128 213 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-204ENST00000397545 DIP2BQ9P265 1576 aa12.8□□□□□ -0.36
CCDC40-204ENST00000397545 IQSEC2Q5JU85 1478 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 DHX16O60231 1041 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms