RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 CCDC61Q9Y6R9 512 aa16.9■□□□□ 0.3
RTF1-201ENST00000389629 CSB-PGBD3P0DP91 1061 aa16.9■□□□□ 0.3
RTF1-201ENST00000389629 HSP90B2PQ58FF3 399 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 CWC15Q9P013 229 aaKnown RBP16.89■□□□□ 0.29
RTF1-201ENST00000389629 POLKQ9UBT6 870 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 FANCAO15360 1455 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 TTLL5Q6EMB2 1281 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 CNPY2Q9Y2B0 182 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 MAST1Q9Y2H9 1570 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 CLIP2Q9UDT6 1046 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 A0A1W2PP64 1363 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 PTPRTO14522 1441 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 CD2BP2O95400 341 aaKnown RBP16.89■□□□□ 0.29
RTF1-201ENST00000389629 TOMM22Q9NS69 142 aa16.89■□□□□ 0.29
RTF1-201ENST00000389629 KDM4AO75164 1064 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 PRPF40BQ6NWY9 871 aaKnown RBP16.88■□□□□ 0.29
RTF1-201ENST00000389629 NOC3LQ8WTT2 800 aaKnown RBP16.88■□□□□ 0.29
RTF1-201ENST00000389629 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.88■□□□□ 0.29
RTF1-201ENST00000389629 V9GYY5 206 aaPredicted RBP16.88■□□□□ 0.29
RTF1-201ENST00000389629 ZMYM3Q14202 1370 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 PTPRCP08575 1304 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 POLR3GO15318 223 aaPredicted RBP16.88■□□□□ 0.29
RTF1-201ENST00000389629 CCDC34Q96HJ3 373 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 ABCC10Q5T3U5 1492 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 NOM1Q5C9Z4 860 aaKnown RBP16.88■□□□□ 0.29
RTF1-201ENST00000389629 SPG7Q9UQ90 795 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 PLA2R1Q13018 1463 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 EIF4G3O43432 1585 aaKnown RBP16.88■□□□□ 0.29
RTF1-201ENST00000389629 UVSSAQ2YD98 709 aa16.88■□□□□ 0.29
RTF1-201ENST00000389629 TFIP11Q9UBB9 837 aaKnown RBP16.88■□□□□ 0.29
RTF1-201ENST00000389629 ME1P48163 572 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 SYNE3Q6ZMZ3 975 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 LMBRD1Q9NUN5 540 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 LIMCH1Q9UPQ0 1083 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 STX6O43752 255 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 DDX58O95786 925 aaKnown RBP16.87■□□□□ 0.29
RTF1-201ENST00000389629 ZNF445P59923 1031 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 CEP85Q6P2H3 762 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 ESYT1Q9BSJ8 1104 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 PRDM15P57071 1507 aaPredicted RBP16.87■□□□□ 0.29
RTF1-201ENST00000389629 CHAMP1Q96JM3 812 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 ZSCAN31Q96LW9 406 aaPredicted RBP16.87■□□□□ 0.29
RTF1-201ENST00000389629 SIL1Q9H173 461 aa16.87■□□□□ 0.29
RTF1-201ENST00000389629 TARBP1Q13395 1621 aaKnown RBP16.86■□□□□ 0.29
RTF1-201ENST00000389629 BLOC1S2Q6QNY1 142 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 CCDC186Q7Z3E2 898 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 PPP1R9BQ96SB3 815 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 TAF7LQ5H9L4 462 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 UBXN4Q92575 508 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 GTPBP4Q9BZE4 634 aaKnown RBP16.86■□□□□ 0.29
RTF1-201ENST00000389629 LRRIQ1Q96JM4 1722 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 GTF2F1P35269 517 aaKnown RBP eCLIP16.86■□□□□ 0.29
RTF1-201ENST00000389629 PKP1Q13835 747 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 ZRANB1Q9UGI0 708 aa16.86■□□□□ 0.29
RTF1-201ENST00000389629 UBE2HP62256 183 aa16.85■□□□□ 0.29
RTF1-201ENST00000389629 KIF18AQ8NI77 898 aa16.85■□□□□ 0.29
RTF1-201ENST00000389629 DDX11Q96FC9 970 aa16.85■□□□□ 0.29
RTF1-201ENST00000389629 RIC3Q7Z5B4 369 aa16.85■□□□□ 0.29
RTF1-201ENST00000389629 AACSQ86V21 672 aa16.85■□□□□ 0.29
RTF1-201ENST00000389629 FBXO31Q5XUX0 539 aaPredicted RBP16.85■□□□□ 0.29
RTF1-201ENST00000389629 KIF1BPQ96EK5 621 aa16.85■□□□□ 0.29
RTF1-201ENST00000389629 U2AF2P26368 475 aaKnown RBP eCLIP16.84■□□□□ 0.29
RTF1-201ENST00000389629 SETQ01105 290 aaPredicted RBP16.84■□□□□ 0.29
RTF1-201ENST00000389629 FLIIQ13045 1269 aa16.84■□□□□ 0.29
RTF1-201ENST00000389629 RASSF8Q8NHQ8 419 aa16.84■□□□□ 0.29
RTF1-201ENST00000389629 DNAJC2Q99543 621 aaKnown RBP16.84■□□□□ 0.29
RTF1-201ENST00000389629 TMEM63CQ9P1W3 806 aa16.84■□□□□ 0.29
RTF1-201ENST00000389629 TERF1P54274 439 aa16.84■□□□□ 0.29
RTF1-201ENST00000389629 LEKR1Q6ZMV7 388 aa16.84■□□□□ 0.29
RTF1-201ENST00000389629 TPM1P09493 284 aa16.84■□□□□ 0.29
RTF1-201ENST00000389629 NEUROD6Q96NK8 337 aa16.84■□□□□ 0.29
RTF1-201ENST00000389629 GJB2P29033 226 aa16.83■□□□□ 0.29
RTF1-201ENST00000389629 HIP1O00291 1037 aa16.83■□□□□ 0.28
RTF1-201ENST00000389629 PPP6R1Q9UPN7 881 aa16.83■□□□□ 0.28
RTF1-201ENST00000389629 SERPINC1P01008 464 aa16.83■□□□□ 0.28
RTF1-201ENST00000389629 CALCOCO1Q9P1Z2 691 aa16.83■□□□□ 0.28
RTF1-201ENST00000389629 GSPT1P15170 499 aaKnown RBP16.82■□□□□ 0.28
RTF1-201ENST00000389629 TMCO3Q6UWJ1 677 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 MYRIPQ8NFW9 859 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 AK7Q96M32 723 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 SYNMO15061 1565 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 ARHGEF5Q12774 1597 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 ZSCAN22P10073 491 aaPredicted RBP16.82■□□□□ 0.28
RTF1-201ENST00000389629 ANKRD1Q15327 319 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 ERC1Q8IUD2 1116 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 ZNF165P49910 485 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 STK38Q15208 465 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 CEP57L1Q8IYX8 460 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 CHMP4CQ96CF2 233 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 ERVK-7P63135 1459 aa16.82■□□□□ 0.28
RTF1-201ENST00000389629 WASLO00401 505 aaPredicted RBP16.81■□□□□ 0.28
RTF1-201ENST00000389629 KDM5AP29375 1690 aaKnown RBP16.81■□□□□ 0.28
RTF1-201ENST00000389629 GLRX3O76003 335 aaKnown RBP16.81■□□□□ 0.28
RTF1-201ENST00000389629 PDE4CQ08493 712 aa16.81■□□□□ 0.28
RTF1-201ENST00000389629 PUS7Q96PZ0 661 aaKnown RBP16.81■□□□□ 0.28
RTF1-201ENST00000389629 RAB11FIP3O75154 756 aa16.81■□□□□ 0.28
RTF1-201ENST00000389629 PTGS1P23219 599 aa16.81■□□□□ 0.28
RTF1-201ENST00000389629 CEP135Q66GS9 1140 aa16.81■□□□□ 0.28
RTF1-201ENST00000389629 TSR1Q2NL82 804 aaKnown RBP16.8■□□□□ 0.28
RTF1-201ENST00000389629 ABTB2Q8N961 1025 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms