RNA–Protein interactions for RNA: ENST00000374487.6

HMGCL-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,151 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-202ENST00000374487 BRWD3Q6RI45 1802 aa15.32■□□□□ 0.04
HMGCL-202ENST00000374487 CRB1P82279 1406 aa15.32■□□□□ 0.04
HMGCL-202ENST00000374487 ERBB3P21860 1342 aa15.32■□□□□ 0.04
HMGCL-202ENST00000374487 ELL2O00472 640 aaPredicted RBP15.32■□□□□ 0.04
HMGCL-202ENST00000374487 VAMP4O75379 141 aa15.32■□□□□ 0.04
HMGCL-202ENST00000374487 NLRP2Q9NX02 1062 aa15.32■□□□□ 0.04
HMGCL-202ENST00000374487 PEAK1Q9H792 1746 aa15.31■□□□□ 0.04
HMGCL-202ENST00000374487 ZNF853P0CG23 659 aa15.31■□□□□ 0.04
HMGCL-202ENST00000374487 AEBP1Q8IUX7 1158 aa15.31■□□□□ 0.04
HMGCL-202ENST00000374487 BRPF1P55201 1214 aaPredicted RBP15.31■□□□□ 0.04
HMGCL-202ENST00000374487 DCTN1Q14203 1278 aa15.3■□□□□ 0.04
HMGCL-202ENST00000374487 USHBP1Q8N6Y0 703 aa15.3■□□□□ 0.04
HMGCL-202ENST00000374487 TSPYL6Q8N831 410 aa15.3■□□□□ 0.04
HMGCL-202ENST00000374487 UPF1Q92900 1129 aaKnown RBP eCLIP15.3■□□□□ 0.043e-12■■■■■ 46
HMGCL-202ENST00000374487 HDAC1Q13547 482 aaPredicted RBP15.29■□□□□ 0.04
HMGCL-202ENST00000374487 TWISTNBQ3B726 338 aaPredicted RBP15.29■□□□□ 0.04
HMGCL-202ENST00000374487 KRT27Q7Z3Y8 459 aa15.29■□□□□ 0.04
HMGCL-202ENST00000374487 ZBTB40Q9NUA8 1239 aa15.29■□□□□ 0.04
HMGCL-202ENST00000374487 MRPL50Q8N5N7 158 aaKnown RBP15.28■□□□□ 0.04
HMGCL-202ENST00000374487 BARGINQ6ZT62 677 aa15.28■□□□□ 0.04
HMGCL-202ENST00000374487 ARHGAP45Q92619 1136 aa15.28■□□□□ 0.04
HMGCL-202ENST00000374487 CARD10Q9BWT7 1032 aa15.28■□□□□ 0.04
HMGCL-202ENST00000374487 CHMP4BQ9H444 224 aaKnown RBP15.28■□□□□ 0.04
HMGCL-202ENST00000374487 NBPF6Q5VWK0 638 aa15.27■□□□□ 0.04
HMGCL-202ENST00000374487 NBPF4Q96M43 638 aa15.27■□□□□ 0.04
HMGCL-202ENST00000374487 THSD7AQ9UPZ6 1657 aa15.27■□□□□ 0.03
HMGCL-202ENST00000374487 C8orf58Q8NAV2 365 aa15.26■□□□□ 0.03
HMGCL-202ENST00000374487 RGPD2P0DJD1 1756 aa15.26■□□□□ 0.03
HMGCL-202ENST00000374487 RTL5Q5HYW3 569 aaPredicted RBP15.25■□□□□ 0.03
HMGCL-202ENST00000374487 FLT4P35916 1363 aa15.24■□□□□ 0.03
HMGCL-202ENST00000374487 MCM10Q7L590 875 aa15.24■□□□□ 0.03
HMGCL-202ENST00000374487 UPF2Q9HAU5 1272 aaKnown RBP15.24■□□□□ 0.03
HMGCL-202ENST00000374487 THRAP3Q9Y2W1 955 aaKnown RBP15.24■□□□□ 0.03
HMGCL-202ENST00000374487 SLC4A3P48751 1232 aa15.23■□□□□ 0.03
HMGCL-202ENST00000374487 SMC5Q8IY18 1101 aa15.23■□□□□ 0.03
HMGCL-202ENST00000374487 ZBTB7BO15156 539 aaPredicted RBP15.22■□□□□ 0.03
HMGCL-202ENST00000374487 SEC24BO95487 1268 aa15.22■□□□□ 0.03
HMGCL-202ENST00000374487 PTF1AQ7RTS3 328 aa15.22■□□□□ 0.03
HMGCL-202ENST00000374487 API5Q9BZZ5 524 aaKnown RBP15.22■□□□□ 0.03
HMGCL-202ENST00000374487 ABCC6O95255 1503 aa15.22■□□□□ 0.03
HMGCL-202ENST00000374487 DISP2A7MBM2 1401 aa15.22■□□□□ 0.03
HMGCL-202ENST00000374487 RTF1Q92541 710 aaKnown RBP15.22■□□□□ 0.03
HMGCL-202ENST00000374487 RTL1A6NKG5 1358 aa15.21■□□□□ 0.03
HMGCL-202ENST00000374487 DLG5Q8TDM6 1919 aa15.21■□□□□ 0.03
HMGCL-202ENST00000374487 CHL1O00533 1208 aa15.21■□□□□ 0.03
HMGCL-202ENST00000374487 DDB1Q16531 1140 aa15.21■□□□□ 0.03
HMGCL-202ENST00000374487 MARCH10Q8NA82 808 aaPredicted RBP15.21■□□□□ 0.03
HMGCL-202ENST00000374487 RGPD1P0DJD0 1748 aa15.2■□□□□ 0.02
HMGCL-202ENST00000374487 IL2RBP14784 551 aa15.2■□□□□ 0.02
HMGCL-202ENST00000374487 DEFB132Q7Z7B7 95 aa15.2■□□□□ 0.02
HMGCL-202ENST00000374487 KIF24Q5T7B8 1368 aa15.2■□□□□ 0.02
HMGCL-202ENST00000374487 LRRC37A3O60309 1634 aa15.2■□□□□ 0.02
HMGCL-202ENST00000374487 ABCC4O15439 1325 aa15.2■□□□□ 0.02
HMGCL-202ENST00000374487 EYA1Q99502 592 aa15.19■□□□□ 0.02
HMGCL-202ENST00000374487 TRIM37O94972 964 aa15.19■□□□□ 0.02
HMGCL-202ENST00000374487 MTHFSDQ2M296 383 aaKnown RBP15.19■□□□□ 0.02
HMGCL-202ENST00000374487 FAM208AQ9UK61 1670 aaKnown RBP15.18■□□□□ 0.02
HMGCL-202ENST00000374487 MEGF6O75095 1541 aa15.18■□□□□ 0.02
HMGCL-202ENST00000374487 EXOC5O00471 708 aa15.18■□□□□ 0.02
HMGCL-202ENST00000374487 NUCB1Q02818 461 aa15.18■□□□□ 0.02
HMGCL-202ENST00000374487 KRT24Q2M2I5 525 aa15.18■□□□□ 0.02
HMGCL-202ENST00000374487 DDX54Q8TDD1 881 aaKnown RBP15.18■□□□□ 0.02
HMGCL-202ENST00000374487 C1orf115Q9H7X2 142 aa15.18■□□□□ 0.02
HMGCL-202ENST00000374487 PARP4Q9UKK3 1724 aaKnown RBP15.17■□□□□ 0.02
HMGCL-202ENST00000374487 GAS2L2Q8NHY3 880 aa15.17■□□□□ 0.02
HMGCL-202ENST00000374487 WNK3Q9BYP7 1800 aa15.17■□□□□ 0.02
HMGCL-202ENST00000374487 IGSF1Q8N6C5 1336 aa15.17■□□□□ 0.02
HMGCL-202ENST00000374487 KDRP35968 1356 aa15.16■□□□□ 0.02
HMGCL-202ENST00000374487 CHD1LQ86WJ1 897 aa15.16■□□□□ 0.02
HMGCL-202ENST00000374487 GCC1Q96CN9 775 aa15.16■□□□□ 0.02
HMGCL-202ENST00000374487 LNPKQ9C0E8 428 aa15.16■□□□□ 0.02
HMGCL-202ENST00000374487 VIRMAQ69YN4 1812 aaKnown RBP15.16■□□□□ 0.02
HMGCL-202ENST00000374487 MIS18AQ9NYP9 233 aa15.15■□□□□ 0.02
HMGCL-202ENST00000374487 TSPYL4Q9UJ04 414 aa15.15■□□□□ 0.02
HMGCL-202ENST00000374487 BECN1Q14457 450 aa15.15■□□□□ 0.02
HMGCL-202ENST00000374487 ANKRD45Q5TZF3 282 aa15.15■□□□□ 0.02
HMGCL-202ENST00000374487 ACSBG1Q96GR2 724 aa15.15■□□□□ 0.02
HMGCL-202ENST00000374487 KCNQ2O43526 872 aa15.14■□□□□ 0.01
HMGCL-202ENST00000374487 FAM196AQ6ZSG2 479 aa15.14■□□□□ 0.01
HMGCL-202ENST00000374487 CDCA7Q9BWT1 371 aaPredicted RBP15.14■□□□□ 0.01
HMGCL-202ENST00000374487 EN1Q05925 392 aaPredicted RBP15.13■□□□□ 0.01
HMGCL-202ENST00000374487 TBC1D32Q96NH3 1257 aa15.13■□□□□ 0.01
HMGCL-202ENST00000374487 TNS2Q63HR2 1409 aa15.13■□□□□ 0.01
HMGCL-202ENST00000374487 HTATSF1O43719 755 aaKnown RBP15.12■□□□□ 0.01
HMGCL-202ENST00000374487 SLC4A2P04920 1241 aa15.12■□□□□ 0.01
HMGCL-202ENST00000374487 INTS3Q68E01 1043 aaKnown RBP15.12■□□□□ 0.01
HMGCL-202ENST00000374487 RAPGEF4Q8WZA2 1011 aa15.12■□□□□ 0.01
HMGCL-202ENST00000374487 PTPRCP08575 1304 aa15.12■□□□□ 0.01
HMGCL-202ENST00000374487 GNAT3A8MTJ3 354 aa15.12■□□□□ 0.01
HMGCL-202ENST00000374487 DEKP35659 375 aaKnown RBP15.12■□□□□ 0.01
HMGCL-202ENST00000374487 ZCRB1Q8TBF4 217 aaKnown RBP15.12■□□□□ 0.01
HMGCL-202ENST00000374487 TATP17735 454 aaPredicted RBP15.11■□□□□ 0.01
HMGCL-202ENST00000374487 MFAP1P55081 439 aaKnown RBP15.11■□□□□ 0.01
HMGCL-202ENST00000374487 SIRT2Q8IXJ6 389 aa15.11■□□□□ 0.01
HMGCL-202ENST00000374487 OVOS2A0A0G2JMS6 1433 aa15.11■□□□□ 0.01
HMGCL-202ENST00000374487 APBA3O96018 575 aa15.1■□□□□ 0.01
HMGCL-202ENST00000374487 CYP27B1O15528 508 aa15.09■□□□□ 0.01
HMGCL-202ENST00000374487 EZH2Q15910 746 aaKnown RBP15.09■□□□□ 0.01
HMGCL-202ENST00000374487 NCAPD2Q15021 1401 aa15.08■□□□□ 0.01
HMGCL-202ENST00000374487 SF3B2Q13435 895 aaKnown RBP15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms